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CBC Publications 2007 - 2014

CBC only reports publications where a significant part of the research has been funded by CBC. By this we mean that at least one of the authors of the reported publications must have his/her main affiliation with CBC, and has contributed to the publication as laid out in Simula's publication guidelines.

Publications from people with part time positions at CBC are generally not counted, unless the research is particularly relevant for a CBC project. Such exceptions from the main rule are few, and must in all cases be approved by the director of the center.

Authors in bold are part of CBC

Articles in International Journals

  1. Computation of Hemodynamics in the Circle of Willis
    M. S. Alnæs, J. G. Isaksen, K.-A. Mardal, B. Romner, M. K. Morgan and T. Ingebrigtsen
    Stroke, vol. 38, pp. 2500—2505, 2007
  2. Vorticity–strain Residual-Based Turbulence Modelling of the Taylor–Green Vortex
    R. E. Bensow, M. Larson and P. Westerlund
    International Journal for Numerical Methods in Fluids, vol. 54, pp. 745—756, 2007
  3. A Unified Framework of Multi-Objective Cost Functions for Partitioning Unstructured Finite Element Meshes
    X. Cai and N. Bouhmala
    Applied Mathematical Modelling, vol. 31, pp. 1711—1728, 2007
  4. A Note on the Efficiency of the Conjugate Gradient Method for a Class of Time-Dependent Problems
    X. Cai, B. F. Nielsen and A. Tveito
    Numerical Linear Algebra with Applications, vol. 14, pp. 459—467, 2007
  5. Tsunami Generation and Propagation From the Mjølnir Asteroid Impact
    S. Glimsdal, G. K. Pedersen, H. P. Langtangen, V. Shuvalov and H. Dypvik
    Metheoritics & Planetary Science, vol. 42, pp. 1473—1493, 2007
  6. An Unconditionally Stable Numerical Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
    M. Hanslien, J. Sundnes and A. Tveito
    Mathematical Biosciences, vol. 208, pp. 375—392, 2007
  7. A Sharp Interface Finite Element Method for Elliptic Interface Problems; Formulation and Investigation in One Space Dimension
    K. Holmås and H. P. Langtangen
    International Journal of Pure and Applied Mathematics, vol. 34, pp. 287—312, 2007
  8. Efficient Compilation of a Class of Variational Forms
    R. C. Kirby and A. Logg
    ACM Transactions on Mathematical Software, vol. 33, 2007
  9. Adaptive Finite Element Approximation of Multiphysics Problems
    M. Larson and F. Bengzon
    Communications in Numerical Methods in Engineering, vol. 24, pp. 505—521, 2007
  10. Automating the Finite Element Method
    A. Logg
    Archives of Computational Methods in Engineering, vol. 14, pp. 93—138, 2007
  11. A Comparison of Non-Standard Solvers for ODEs Describing Cellular Reactions in the Heart
    M. MacLachlan, J. Sundnes and R. J. Spiteri
    Computer Methods in Biomechanics and Biomedical Engineering, vol. 10, pp. 317—326, 2007
  12. A Linear System of Partial Differential Equations Modeling the Resting Potential of a Heart With Regional Ischemia
    M. MacLachlan, J. Sundnes, O. Skavhaug, O. M. Lysaker, B. F. Nielsen and A. Tveito
    Mathematical Biosciences, vol. 210, pp. 238—252, 2007
  13. An Order Optimal Solver for the Discretized Bidomain Equations
    K.-A. Mardal, B. F. Nielsen, X. Cai and A. Tveito
    Numerical Linear Algebra with Applications, vol. 14, pp. 83—98, 2007
  14. Order Optimal Preconditioners for Implicit Runge-Kutta Schemes Applied to Parabolic PDE's
    K.-A. Mardal, T. K. Nilssen and G. A. Staff
    SIAM Journal on Scientific Computing, vol. 29, pp. 361—375, 2007
  15. Using Python to Solve Partial Differential Equations
    K.-A. Mardal, O. Skavhaug, G. T. Lines, G. A. Staff and Å. Ødegård
    Computing in Science & Engineering, vol. 9, pp. 48—51, 2007
  16. Optimal Monodomain Approximations of the Bidomain Equations
    B. F. Nielsen, T. S. Ruud, G. T. Lines and A. Tveito
    Applied Mathematics and Computation, vol. 184, pp. 276—290, 2007
  17. On the Possibility for Computing the Transmembrane Potential in the Heart With a One Shot Method; an Inverse Problem
    B. F. Nielsen, X. Cai and O. M. Lysaker
    Mathematical Biosciences, vol. 210, pp. 523—553, 2007
  18. On the Use of the Resting Potential and Level Set Methods for Identifying Ischemic Heart Disease; an Inverse Problem
    B. F. Nielsen, O. M. Lysaker and A. Tveito
    Journal of Computational Physics, vol. 220, pp. 772—790, 2007
  19. Transversely Isotropic Membrane Shells With Application to Mitral Valve Mechanics. Constitutive Modelling and Finite Element Implementation
    V. E. Prot, B. H. Skallerud and G. A. Holzapfel
    International Journal for Numerical Methods in Engineering, vol. 71, pp. 987—1008, 2007
  20. A Finite Element Method for Modelling Electromechanical Wave Propagation in Anisotropic Piezoelectric Media
    S. Rahman, H. P. Langtangen and C. H. W. Barnes
    Communications in Computational Physics, vol. 2, pp. 271—292, 2007
  21. Pulse-Induced Acoustoelectric Vibrations in Surface-Gated GaAs-Based Quantum Devices
    S. Rahman, T. M. Stace, H. P. Langtangen, M. Kataoka and C. H. W. Barnes
    Physical Review B: Condensed Matter and Materials Physics, vol. 75, 2007
  22. On the Accuracy of Operator Splitting As Applied to Discretized Reaction Diffusion Systems
    A. Schroll, G. T. Lines and A. Tveito
    International Journal of Computer Mathematics, vol. 84, pp. 871—885, 2007
  23. Two-Parameter Fracture Mechanics and Circumferential Crack Growth in Surface Cracked Pipelines Using Line-Spring Elements
    E. Berg, B. H. Skallerud and C. Thaulow
    Engineering Fracture Mechanics, vol. 75, pp. 17—30, 2008
  24. Ultimate Fracture Capacity of Pressurized Pipes With Defects - Comparisons of Large Scale Testing and Numerical Simulations
    E. Berg, E. Østby, C. Thaulow and B. H. Skallerud
    Engineering Fracture Mechanics, vol. 75, pp. 2352—2366, 2008
  25. Tracking Airborne Legionella and Legionella Pneumophila at a Biological Treatment Plant
    J. M. Blatny, B. A. P. Reif, G. Skogan, Ø. Andreassen, E. A. Høiby, E. Ask, V. Waagen, D. Aanonsen, I. S. Aaberge and D. A. Caugant
    Enviromental Science & Technology, vol. 42, pp. 7360—7367, 2008
  26. Mechanisms of Transmurally Varying Myocyte Electromechanics in an Integrated Computational Model
    S. G. Campbell, S. N. Flaim, C. H. Leem and A. D. McCulloch
    Philosophical Transactions of the Royal Society A, vol. 366, pp. 3361–3380, 2008
  27. Convection Models in the Kamchatka Region Using Imposed Plate Motion and Thermal Histories
    S. R. Clark and R. D. Müller
    Journal of Geodynamics, vol. 46, pp. 1—9, 2008
  28. Episodicity in Back-Arc Tectonic Regimes
    S. R. Clark, D. Stegman and R. D. MÜller
    Physics of the Earth and Planetary Interiors, vol. 171, pp. 265—279, 2008
  29. An Explicit Finite Difference Scheme for the Camassa-Holm Equation
    G. M. Coclite, K. H. Karlsen and N. H. Risebro
    Advances in Differential Equations, vol. 13, pp. 681—732, 2008
  30. Discovering Regulators of the Drosophila Cardiac Hypoxia Response Using Automated Phenotyping Technology
    J. D. Feala, J. H. Omens, G. Paternostro and A. D. McCulloch
    Annals of the New York Academy of Science, vol. 1123, pp. 169—177, 2008
  31. Stochastic Binding of Ca2+ in the Dyadic Cleft: Continuous Vs. Random-Walk Description of Diffusion
    J. E. Hake and G. T. Lines
    Biophysical Journal, vol. 94, pp. 4184—4201, 2008
  32. A Pseudospectral Fourier Method for a 1D Incompressible Two-Fluid Model
    H. Holmås, D. Clamond and H. P. Langtangen
    International Journal for Numerical Methods in Fluids, vol. 58, pp. 639—658, 2008
  33. Algorithms and Data Structures for Multi-Adaptive Time-Stepping
    J. Jansson and A. Logg
    ACM Trans. Math. Software, vol. 35, pp. 1—24, 2008
  34. Unified Finite Element Discretizations of Coupled Darcy-Stokes Flow
    T. K. Karper, K.-A. Mardal and R. Winther
    Numerical Methods for Partial Differential Equations, vol. 25, pp. 311—326, 2008
  35. Effect of Heterogeneous APD Restitution on VF Organization in a Model of the Human Ventricles
    R. H. Keldermann, K. ten Tusscher, M. P. Nash, R. Hren, P. Taggart and A. V. Panfilov
    American Journal of Physiology - Heart and Circulatory Physiology, vol. 294, pp. H764—H774, 2008
  36. Cardiac Resynchronization: Insight From Experimental and Computational Models
    R. C. P. Kerckhoffs, J. Lumens, K. Vernooy, J. H. Omens, L. J. Mulligan, T. Delhaas, T. Arts, A. D. McCulloch and F. W. Prinzen
    Progress in Biophysics and Molecular Biology, vol. 97, pp. 543—561, 2008
  37. Benchmarking Domain-Specific Compiler Optimizations for Variational Forms
    R. C. Kirby and A. Logg
    ACM Transactions on Mathematical Software, vol. 35, pp. 1—18, 2008
  38. The Role of Mechanoelectric Feedback in Vulnerability to Electric Shock
    W. Li, V. Gurev and A. D. McCulloch
    Progress in Biophysics and Molecular Biology, vol. 97, pp. 461—478, 2008
  39. On the Frequency of Automaticity During Ischemia in Simulations Based on Stochastic Perturbations of the Luo-Rudy 1 Model
    S. Linge, G. T. Lines, J. Sundnes and A. Tveito
    Computers in Biology and Medicine, vol. 38, pp. 1218—1227, 2008
  40. On the Applicability of Bovine Morsellized Cortico-Cancellous Bone As a Substitute for Human Morsellized Cortico-Cancellous Bone for in Vitro Mechanical Testing
    K. B. Lunde, O. A. Foss and B. H. Skallerud
    Journal of Biomechanics, vol. 41, pp. 3469—3474, 2008
  41. Constitutive Models for Constrained Compression of Unimpacted and Impacted Human Morselized Bone Grafts
    K. B. Lunde, O. A. Foss, L. Fosse and B. H. Skallerud
    Journal of Biomechanical Engineering, vol. 130, pp. 61014, 2008
  42. The Fluid Phase of Morsellized Bone: Characterization of Viscosity and Chemical Composition
    K. B. Lunde, M. Sletmoen, B. T. Stokke and B. H. Skallerud
    Journal of the Mechanical Behavior of Biomedical Materials, vol. 1, pp. 199—205, 2008
  43. Conditional Velocity Statistics in the Double Scalar Mixing Layer - a Mapping Closure Approach
    M. Mortensen and S. M. d. B. Kops
    Combustion Theory and Modelling, vol. 12, pp. 929—941, 2008
  44. Penalty Methods for the Numerical Solution of American Multi-Asset Option Problems
    B. F. Nielsen, O. Skavhaug and A. Tveito
    Journal of Computational and Applied Mathematics, vol. 222, pp. 3—16, 2008
  45. Automated Code Generation for Discontinuous Galerkin Methods
    K. B. Oelgaard, A. Logg and G. N. Wells
    SIAM Journal on Scientific Computing, vol. 31, pp. 849—864, 2008
  46. Fracture of Anodic-Bonded Silicon-Thin Film Glass-Silicon Triple Stacks
    L. Y. Shang, Z. L. Shang and B. H. Skallerud
    Engineering Fracture Mechanics, vol. 75, pp. 1064—1082, 2008
  47. Analysis of a 1D Incompressible Two-Fluid Model Including Artificial Diffusion
    H. Sira, T. Nordsveen, H. P. Langtangen and R. Shulkes
    IMA Journal of Applied Mathematics, pp. 651—667, 2008
  48. Modeling of the Ventricular Conduction System
    K. ten Tusscher and A. V. Panfilov
    Progress in Biophysics and Molecular Biology, vol. 96, pp. 152—170, 2008
  49. Three-Component Vectorial Proper Orthogonal Decomposition of Axisymmetric Wake Behind a Disk
    M. Tutkun, P. B. V. Johansson and W. K. George
    AIAA Journal, vol. 46, pp. 1118—1134, 2008
  50. A Condition for Setting Off Ectopic Waves in Computational Models of Excitable Cells
    A. Tveito and G. T. Lines
    Mathematical Biosciences, vol. 213, pp. 141—150, 2008
  51. A View Toward the Future of Subsurface Characterization: CAT Scanning Groundwater Basins
    J. T.-C. Yeh, C.-H. Lee, K.-C. Hsu, W. A. Illman, W. Barrash, X. Cai, J. Daniels, E. Sudicky, L. Wan, G. Li and C. L. Winter
    Water Resources Research, vol. 44, 2008
  52. Surface Roughness Characterization for Fatigue Life Predictions Using Finite Element Analysis
    S. K. Ås, B. H. Skallerud and B. W. Tveiten
    International Journal of Fatigue, vol. 30, pp. 2200—2209, 2008
  53. Unified Framework for Finite Element Assembly
    M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
    International Journal of Computational Science and Engineering, vol. 4, pp. 231—244, 2009
  54. Stability of Lagrange Elements for the Mixed Laplacian
    D. N. Arnold and M. E. Rognes
    Calcolo, vol. 46, pp. 245—260, 2009
  55. Bifurcating Solutions to the Monodomain Model Equipped With FitzHugh-Nagumo Kinetics
    R. Artebrant
    Journal of Applied Mathematics, vol. 2009, 2009
  56. Cyclic Plasticity Modelling for ANDES Thin Shell and Line-Spring Finite Elements
    E. Berg, K. H. Holthe and B. H. Skallerud
    International Journal of Applied Mechanics, vol. 1, pp. 201—233, 2009
  57. A Multilevel Approach for the Satisfiability Problem
    N. Bouhmala and X. Cai
    ISAST Transactions on Computers and Intelligent Systems, vol. 1, pp. 29—37, 2009
  58. Aproaching Cardiac Modeling Challenges to Computer Science With CellMl-Based Web Tools
    R. S. Campos, R. M. Amorim, C. M. Costa, B. L. d. Oliveira, C. Barbosa, J. Sundnes and R. W. dos Santos
    Future Generation Computer Systems, vol. 26, pp. 462—470, 2009
  59. Double Large Field Stereoscopic PIV in a High Reynolds Number Turbulent Boundary Layer
    S. Coudert, J. M. Foucaut, J. Kostas, M. Stanislas, P. Braud, C. Fourment, J. Delville, M. Tutkun, F. Mehdi, P. B. V. Johansson and W. K. George
    Experiments in Fluids, pp. 1—12, 2009
  60. Adaptive Finite Element Simulation of Ventricular Fibrillation Dynamics
    P. Deuflhard, B. Erdmann, R. Roitzsch and G. T. Lines
    Computing and Visualization in Science, vol. 12, pp. 201—205, 2009
  61. Mind the Gap: a Guideline for Large Eddy Simulation
    W. K. George and M. Tutkun
    Philosophical Transactions of the Royal Society A, vol. 367, pp. 2839—2847, 2009
  62. Immersed Boundary Method for the MHD Flows of Liquid Metals
    D. G. E. Grigoriadis, S. C. Kassinos and E. V. Votyakov
    Journal of Computational Physics, vol. 228, pp. 903—920, 2009
  63. Lagrangian Particle Dispersion in Turbulent Flow Over a Wall Mounted Obstacle
    D. G. E. Grigoriadis and S. C. Kassinos
    International Journal of Heat and Fluid Flow, vol. 30, pp. 462—470, 2009
  64. An Unconditionally Stable Second Order Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
    M. Hanslien, R. Artebrant, J. Sundnes and A. Tveito
    International Journal of Numerical Analysis and Modeling, vol. 6, pp. 627—641, 2009
  65. Motion of the Cerebellar Tonsils in the Foramen Magnum During the Cardiac Cycle
    V. Haughton and J. Cousins
    American Journal of Neuroradiology, vol. 30, pp. 1587—1588, 2009
  66. An Assessment of Ductus Venosus Tapering and Wave Transmission From the Fetal Heart
    L. R. Hellevik, J. Vierendeels, T. Kiserud, N. Stergiopulos, F. Irgens, E. Dick, K. Riemslagh and P. Verdonck
    Biomechanics and Modeling in Mechanobiology, vol. 8, pp. 509—517, 2009
  67. A Computational Study of Mother Rotor VF in the Human Ventricles
    R. H. Keldermann, K. ten Tusscher, M. P. Nash, C. P. Bradley, R. Hren, P. Taggart and A. V. Panfilov
    American Journal of Physiology - Heart and Circulatory Physiology, vol. 296, pp. H370—H379, 2009
  68. Intracellular Ca2+ Nonlinear Wave Behaviours in a Three Dimensional Ventricular Cell Model
    P. Li and A. V. Holden
    Physica D: Nonlinear Phenomena, vol. 238, pp. 992—999, 2009
  69. Synchronizing Computer Simulations With Measurement Data for a Case of Atrial Flutter
    G. T. Lines, S. Linge, M. MacLachlan and A. Tveito
    Annals of Biomedical Engineering, vol. 37, pp. 1287—1293, 2009
  70. Numerical Solution of the Bidomain Equations
    S. Linge, J. Sundnes, M. Hanslien, G. T. Lines and A. Tveito
    Philosophical Transactions of the Royal Society A, vol. 367, pp. 1931—1951, 2009
  71. Efficient Representation of Computational Meshes
    A. Logg
    International Journal of Computational Science and Engineering, vol. 4, pp. 283—295, 2009
  72. The Modified Cam Clay Model for Constrained Compression of Human Morsellised Bone: Effects of Porosity on the Mechanical Behaviour
    K. B. Lunde and B. H. Skallerud
    Journal of the Mechanical Behavior of Biomedical Materials, vol. 2, pp. 43—50, 2009
  73. Global C1 Maps on General Domains
    A. E. Løvgren, Y. Maday and E. M. Rønquist
    Mathematical Models and Methods in Applied Sciences (M3AS), vol. 19, pp. 803—832, 2009
  74. Direct Simulation of the Limiting Flux: I. Interpretation of the Experimental Results
    S. Ma, S. C. Kassinos and D. Kassinos
    Journal of Membrane Science, vol. 337, pp. 81—91, 2009
  75. K+ Current Changes Account for the Rate Dependence of the Action Potential in the Human Atrial Myocyte
    M. M. Maleckar, J. L. Greenstein, W. R. Giles and N. A. Trayanova
    American Journal of Physiology - Heart and Circulatory Physiology, vol. 297, pp. 1398—1410, 2009
  76. Electrotonic Coupling Between Human Atrial Myocytes and Fibroblasts Alters Excitability and Repolarization
    M. M. Maleckar, J. L. Greenstein, W. R. Giles and N. A. Trayanova
    Biophysical Journal, vol. 97, pp. 2179—2190, 2009
  77. Derivation of the Conditional Moment Closure Equations for Spray Combustion
    M. Mortensen and R. W. Bilger
    Combustion and Flame, vol. 156, pp. 62—72, 2009
  78. Preconditioning by Inverting the Laplacian; an Analysis of the Eigenvalues
    B. F. Nielsen, A. Tveito and W. Hackbusch
    IMA Journal of Numerical Analysis, vol. 29, pp. 24—42, 2009
  79. Towards a Computational Method for Imaging the Extracellular Potassium Concentration During Regional Ischemia
    B. F. Nielsen, X. Cai, J. Sundnes and A. Tveito
    Mathematical Biosciences, vol. 220, pp. 118—130, 2009
  80. Subject Specific Finite Element Analysis of Implant Stability for a Cementless Femoral Stem
    S. H. Pettersen, T. S. Wik and B. H. Skallerud
    Clinical Biomechanics, vol. 24, pp. 480—487, 2009
  81. Subject Specific Finite Element Analysis of Stress Shielding Around a Cementless Femoral Stem
    S. H. Pettersen, T. S. Wik and B. H. Skallerud
    Clinical Biomechanics, vol. 24, pp. 196—202, 2009
  82. Towards Reproducible Descriptions of Neuronal Network Models
    H. E. Plesser, M.-O. Gewaltig and E. Nordlie
    PLoS Computational Biology, vol. 5, 2009
  83. Nonlinear Solid Finite Element Analysis of Mitral Valves With Heterogeneous Leaflet Layers
    V. E. Prot and B. H. Skallerud
    Computational Mechanics, vol. 43, pp. 353—368, 2009
  84. Towards Sensitizing the Nonlinear v^2 - f Model to Turbulence Structures
    B. A. P. Reif, M. Mortensen and C. A. Langer
    Flow, Turbulence and Combustion, vol. 83, pp. 185—203, 2009
  85. Efficient Assembly of H(div) and H(curl) Conforming Finite Elements
    M. E. Rognes, R. C. Kirby and A. Logg
    SIAM Journal on Scientific Computing, vol. 36, pp. 4130—4151, 2009
  86. Modelling of and Mixed Finite Element Methods for Gels in Biomedical Applications
    M. E. Rognes, M.-C. Calderer and C. Micek
    SIAM Journal on Applied Mathematics, vol. 70, pp. 1305—1329, 2009
  87. Characterization of CSF Hydrodynamics in the Presence and Absence of Tonsillar Ectopia by Means of Computational Flow Analysis
    A. Roldan, O. Wieben, V. Haughton, T. Osswald and C. N.
    American Journal of Neuroradiology, vol. 30, pp. 941—946, 2009
  88. A Computationally Efficient Method for Determining the Size and Location of Myocardial Ischemia
    T. S. Ruud, B. F. Nielsen, O. M. Lysaker and J. Sundnes
    IEEE Transactions on Biomedical Engineering, vol. 56, pp. 263—272, 2009
  89. Evaluation of Fracture Mechanics Parameters for Free Edges in Multi-Layered Structures With Weak Singularities
    L. Y. Shang, Z. L. Zhang and B. H. Skallerud
    International Journal of Solids and Structures, vol. 46, pp. 1134—1148, 2009
  90. Comments on the Evaluation of the Stress Intensity Factor for a General Re-Entrant Corner in Anisotropic Bi-Materials
    L. Y. Shang, Z. L. Zhang and B. H. Skallerud
    Engineering Fracture Mechanics, vol. 76, pp. 1373—1379, 2009
  91. Idiopathic Syringomyelia: Phase-Contrast MR of Cerebrospinal Fluid Flow Dynamics at Level of Foramen Magnum
    A. F. Struck and V. Haughton
    Radiology, vol. 253, pp. 184—90, 2009
  92. A Second Order Algorithm for Solving Dynamic Cell Membrane Equations
    J. Sundnes, R. Artebrant, O. Skavhaug and A. Tveito
    IEEE Transactions on Biomedical Engineering, vol. 56, pp. 2546—2548, 2009
  93. Organization of Ventricular Fibrillation in the Human Heart: Experiments and Models
    K. ten Tusscher, A. Mourad, M. P. Nash, R. H. Clayton, C. P. Bradley, D. J. Paterson, R. Hren, M. Hayward, A. V. Panfilov and P. Taggart
    Experimental Physiology, vol. 94, pp. 553—562, 2009
  94. The Role of Genome and Gene Regulatory Network Canalization in the Evolution of Multi-Trait Polymorphisms and Sympatric Speciation.
    K. ten Tusscher and P. Hogeweg
    BMC Evolutionary Biology, vol. 9, pp. 159, 2009
  95. In Situ Calibration of Hot Wire Probes in Turbulent Flows
    M. Tutkun, W. K. George, J. M. Foucaut, S. Coudert, M. Stanislas and J. Delville
    Experiments in Fluids, vol. 46, pp. 617—629, 2009
  96. Two-Point Correlations in High Reynolds Number Flat Plate Turbulent Boundary Layers
    M. Tutkun, W. K. George, J. Delville, M. Stanislas, P. B. V. Johansson, J. M. Foucaut and S. Coudert
    Journal of Turbulence, vol. 10, 2009
  97. A Note on a Method for Determining Advantageous Properties of an Anti-Arrhythmic Drug Based on a Mathematical Model of Cardiac Cells
    A. Tveito and G. T. Lines
    Mathematical Biosciences, vol. 217, pp. 167—173, 2009
  98. Analytic Models of Heterogenous Magnetic Fields for Liquid Metal Flow Simulations
    E. V. Votyakov, S. C. Kassinos and X. Albets-Chico
    Theoretical and Computational Fluid Dynamics, vol. 23, pp. 571—578, 2009
  99. The Multigrid Algorithm Applied to a Degenerate Equation; a Convergence Analysis
    A. A. V´zquez and B. F. Nielsen
    Journal of Computational and Applied Mathematics, vol. 225, pp. 251—267, 2009
  100. Variational Multiscale Turbulence Modelling in a High Order Spectral Element Method
    C. E. Wasberg, T. Gjesdal, B. A. P. Reif and Ø. Andreassen
    Journal of Computational Physics, vol. 228, pp. 7333—7356, 2009
  101. Analysis of Tracer Tomography Using Temporal Moments of Tracer Breakthrough Curves
    J. Zhu, X. Cai and J. T.-C. Yeh
    Advances in Water Resources, vol. 32, pp. 391—400, 2009
  102. A Lumped Particle Modeling Framework for Simulating Particle Transport in Fluids
    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
    Communications in Computational Physics, vol. 8, pp. 115—142, 2010
  103. On the Efficiency of Symbolic Computations Combined With Code Generation for Finite Element Methods
    M. S. Alnæs and K.-A. Mardal
    ACM Transactions on Mathematical Software, vol. 37, 2010
  104. A Method for Analyzing the Stability of the Resting State for a Model of Pacemaker Cells Surrounded by Stable Cells
    R. Artebrant, A. Tveito and G. T. Lines
    Mathematical Biosciences and Engineering, vol. 7, pp. 505—526, 2010
  105. Adaptive Finite Element Approximation of Multiphysics Problems: a Fluid-Structure Interaction Model Problem
    F. Bengzon and M. Larson
    International Journal for Numerical Methods in Engineering, vol. 84, pp. 1451—1465, 2010
  106. Residual Based VMS Subgrid Modeling for Vortex Flows
    R. E. Bensow and M. Larson
    Computer Methods in Applied Mechanics and Engineering, vol. 199, pp. 802—809, 2010
  107. Stability Analysis of the Inverse Transmembrane Potential Problem in Electrocardiography
    M. Burger, K.-A. Mardal and B. F. Nielsen
    Inverse Problems, vol. 26, 2010
  108. Coupling of Adjacent Tropomyosins Enhances Cross-Bridge-Mediated Cooperative Activation in a Markov Model of the Cardiac Thin Filament
    S. G. Campbell, F. V. Lionetti, K. S. Campbell and A. D. McCulloch
    Biophysical Journal, vol. 98, pp. 2254—2264, 2010
  109. Blockwise Adaptivity for Time Dependent Problems Based on Coarse Scale Adjoint Solutions
    V. Carey, D. Estep, A. Johansson, M. Larson and S. Tavener
    SIAM Journal on Scientific Computing, vol. 32, pp. 2121—2145, 2010
  110. Consequence Assessment of Indoor Dispersion of Sarin-A Hypothetical Scenario
    M. Endregård, B. A. P. Reif, T. Vik and O. Busmundrud
    Journal of Hazardous Materials, vol. 176, pp. 381—388, 2010
  111. Numerical Analysis of Ca2+ Signaling in Rat Ventricular Myocotes With Realistic Transverse-Axial Tubular Geometry and Inhibited Sarcoplasmic Reticilum
    G. Erikstad, Z. Yu, M. Hoshijima, M. J. Holst, A. D. McCulloch, J. A. McCammon and A. P. Michailova
    Accepted for publication in PLoS Computational Biology, 2010
  112. Systems Approaches and Algorithms for Discovery of Combinatorial Therapies
    J. D. Feala, J. Cortes, P. M. Duxbury, C. Piermarocchi, A. D. McCulloch and G. Paternostro
    Wiley Interdisciplinary Reviews: Systems Biology and Medicine, vol. 2, pp. 93, 2010
  113. MHD Flow Past a Circular Cylinder Using the Immersed Boundary Method
    D. G. E. Grigoriadis, I. E. Sarris and S. C. Kassinos
    Computers & Fluids, vol. 39, pp. 345—358, 2010
  114. An Adaptive Finite Element Method for Second-Order Plate Theory
    P. Hansbo, D. Heintz and M. Larson
    International Journal for Numerical Methods in Engineering, vol. 81, pp. 584—603, 2010
  115. Characterization of Cyclical CSF Flow in the Foramen Magnum and Upper Cervical Spinal Canal With MR Flow Imaging and Computational Fluid Dynamics
    S. Hentschel, K.-A. Mardal, A. E. Løvgren, S. Linge and V. Haughton
    American Journal of Neuroradiology, vol. 31, pp. 997—1002, 2010
  116. Convergence Analysis of Finite Element Method Approximations of Joule Heating Problem in Three Spatial Dimensions
    M. Holst, M. Larson, A. Målqvist and R. Söderlund
    Accepted for publication in BIT, 2010
  117. A Convergent Nonconforming Finite Element Method for Compressible Stokes Flow
    K. H. Karlsen and T. K. Karper
    SIAM Journal on Numerical Analysis, vol. 48, pp. 1846—1876, 2010
  118. Ventricular Dilation and Electrical Dyssynchrony Synergistically Increase Regional Mechanical Non-Uniformity But Not Mechanical Dyssynchrony; a Computational Model
    R. C. P. Kerckhoffs, J. H. Omens, A. D. McCulloch and L. J. Mulligan
    Circulation: Heart Failure, vol. 3, pp. 528—536, 2010
  119. Computational Modeling of the Initiation and Development of Spontaneous Intracellular Ca2+ Waves in Ventricular Myocytes
    P. Li, W. Wei, X. Cai, C. Soeller, M. Cannell and A. V. Holden
    Philosophical Transactions of the Royal Society A, vol. 368, pp. 3953—3965, 2010
  120. Sex Differences in Intracranial Arterial Bifurcations
    H. Lindekleiv, K. Valen-Sendstad, M. K. Morgan, K.-A. Mardal, K. Faulder, J. Magnus, K. Waterloo, B. Romner and T. Ingebrigtsen
    Gender Medicine, vol. 7, pp. 149—155, 2010
  121. CSF Flow Dynamics at the Cranio-Vertebral Junction Studied With an Idealized Model of the Subarachnoid Space and Computational Flow Analysis
    S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
    American Journal of Neuroradiology, vol. 31, pp. 185—192, 2010
  122. DOLFIN: Automated Finite Element Computing
    A. Logg and G. N. Wells
    ACM Transactions on Mathematical Software, vol. 37, 2010
  123. Control of Ca2+ Release by Action Potential Configuration in Normal and Failing Murine Cardiomyocytes
    W. E. Louch, J. E. Hake, G. F. Jølle, H. K. Mørk, I. Sjaastad, G. T. Lines and O. M. Sejersted
    Biophysical Journal, vol. 99, pp. 1377—1386, 2010
  124. Fibroblast-Myocyte Coupling Induces Alterations in Potassium Currents That Trigger Regional Action Potential Duration (APD) Prolongation in Infarcted Myocardium
    K. McDowell, H. Arevalo, M. M. Maleckar, R. C. Blake and N. A. Trayanova
    Heart Rhythm, vol. 5S, pp. 163—164, 2010
  125. Assessment of the Finite Volume Method Applied to the v^2 -F Model
    M. Mortensen, B. A. P. Reif and C. E. Wasberg
    International Journal for Numerical Methods in Fluids, vol. 63, pp. 495—516, 2010
  126. In Silico Estimates of the Free Energy Changes in Growing, Avascular, Tumor Spheroids
    H. Narayanan, S. N. Verner, K. L. Mills, R. Kemkemer and K. Garikipati
    Journal of Physics: Condensed Matter, vol. 22, 2010
  127. Efficient Preconditioners for Optimality Systems Arising in Connection With Inverse Problems
    B. F. Nielsen and K.-A. Mardal
    SIAM Journal on Control and Optimization, vol. 48, pp. 5143—5177, 2010
  128. Simplifying the Parallelization of Scientific Codes by a Function-Centric Approach in Python
    J. K. Nilsen, X. Cai, B. Høyland and H. P. Langtangen
    Computational Science & Discovery, vol. 3, pp. 015003, 2010
  129. Order Optimal Preconditioners for Fully Implicit Runge-Kutta Schemes Applied to the Bidomain Equations
    T. K. Nilssen, G. A. Staff and K.-A. Mardal
    Numerical Methods for Partial Differential Equations, 2010
  130. Visualizing Neuronal Network Connectivity With Connectivity Pattern Tables
    E. Nordlie and H. E. Plesser
    Frontiers in Neuroinformatics, vol. 3, pp. 1—15, 2010
  131. On Modelling and Analysis of Healthy and Pathological Human Mitral Valves: Two Case Studies
    V. E. Prot, B. H. Skallerud, G. Sommer and G. A. Holzapfel
    Journal of the Mechanical Behavior of Biomedical Materials, vol. 3, pp. 167—177, 2010
  132. Mixed Finite Element Methods for Viscoelasticity With Weak Symmetry
    M. E. Rognes and R. Winther
    Mathematical Models and Methods in Applied Sciences (M3AS), vol. 20, pp. 955—985, 2010
  133. Wire Tension Versus Wire Frequency: an Experimental Ilizarov Frame Study
    V. L. Russa, B. H. Skallerud, J. Klaksvik and O. A. Foss
    Journal of Biomechanics, vol. 43, pp. 2327—2331, 2010
  134. Reduction in Wire Tension Caused by Wire Clamping and Wire Tensioner Removal: an Experimental Ilizarov Frame Study
    V. L. Russa, B. H. Skallerud, J. Klaksvik and O. A. Foss
    Accepted for publication in Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine, 2010
  135. Modeling Active Muscle Contraction in Mitral Valve Leaflets During Systole: a First Approach
    B. H. Skallerud, V. E. Prot and I. S. Nordrum
    Biomechanics and Modeling in Mechanobiology, pp. 1—16, 2010
  136. Computing the Stability of Steady-State Solutions of Mathematical Models of the Electrical Activity in the Heart
    A. Tveito, O. Skavhaug, G. T. Lines and R. Artebrant
    Accepted for publication in Computers in Biology and Medicine, 2010
  137. Accuracy and Reproducibility of Phase-Contrast MR Imaging Measurements for CSF Flow
    A. L. Wentland, O. Wieben, F. R. Korosec and V. Haughton
    American Journal of Neuroradiology, vol. 31, pp. 1331—1336, 2010
  138. Computational Vascular Fluid–structure Interaction: Methodology and Application to Cerebral Aneurysms
    B. Y., M.-C. Hsu, Y. Zhang, W. Wang, T. Kvamsdal, S. Hentschel and J. G. Isaksen
    Biomechanics and Modeling in Mechanobiology, vol. 9, pp. 481—498, 2010
  139. Void Coalescence With Or Without Prestrain
    Z. L. Zhang and B. H. Skallerud
    International Journal of Damage Mechanics, vol. 19, pp. 153—174, 2010
  140. Particle Collisions in a Lumped Particle Model
    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
    Communications in Computational Physics, vol. 10, pp. 823—843, 2011
  141. Dispersion of Legionella-Containing Aerosols From a Biological Treatment Plant
    J. M. Blatny, H. E. Fossum, J. Ho, M. Tutkun, G. Skogan, Ø. Andreassen, E. M. Fykse, V. Waagen and B. A. P. Reif
    Frontiers in Bioscience, vol. E3, pp. 1300—1309, 2011
  142. Efficient Block Preconditioners for the Coupled Equations of Pressure and Deformation in Highly Discontinuous Media
    J. B. Haga, H. Osnes and H. P. Langtangen
    International Journal for Numerical and Analytical Methods in Geomechanics, vol. 35, pp. 1466—1482, 2011
  143. A Posteriori Error Estimates for Continuous/discontinuous Galerkin Approximations of the Kirchhoff–Love Plate
    P. Hansbo and M. Larson
    Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 3289—3295, 2011
  144. A Finite Element Method With Discontinuous Rotations for the Mindlin-Reissner Plate Model
    P. Hansbo, D. Hentza and M. Larson
    Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 638—648, 2011
  145. Energy Norm a Posteriori Error Estimates for Discontinuous Galerkin Approximations of the Linear Elasticity Problem
    P. Hansbo and M. Larson
    Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 3026—3030, 2011
  146. Stability of Two Time-Integrators for the Aliev-Panfilov System
    M. Hanslien, R. Artebrant, A. Tveito, G. T. Lines and X. Cai
    International Journal of Numerical Analysis and Modeling, vol. 8, pp. 427—442, 2011
  147. Improvement in Pump Function With Endocardial Biventricular Pacing Increases With Activation Time at the Left Ventricular Pacing Site in Failing Canine Hearts
    E. J. Howard, j. W. Covell, L. J. Mulligan, A. D. McCulloch, J. H. Omens and R. C. P. Kerckhoffs
    American Journal of Physiology - Heart and Circulatory Physiology, vol. 301, pp. H1447—H1455, 2011
  148. Adaptive Component Mode Synthesis in Linear Elasticity
    H. Jakobsson, F. Bengzon and M. Larson
    International Journal for Numerical Methods in Engineering, vol. 86, pp. 829—844, 2011
  149. A Posteriori Error Analysis of Component Mode Synthesis for the Elliptic Eigenvalue Problem
    H. Jakobsson and M. Larson
    Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 2840—2847, 2011
  150. Flow Characteristics in a Canine Aneurysm Model: a Comparison of 4-D Accelerated Phase-Contrast MR Measurements and Computational Fluid Dynamics Simulations
    J. Jiang, K. Johnson, K. Valen-Sendstad, K.-A. Mardal, O. Wieben and C. Strother
    Medical Physics, vol. 38, pp. 6300—6313, 2011
  151. A Posteriori Error Estimates for Mixed Finite Element Approximations of Parabolic Problems
    M. Larson and A. Målquist
    Numerische Mathematik, vol. 118, pp. 33—48, 2011
  152. Effect of Tonsilar Herniation on Cyclic CSF Flow Studied With Computational Flow Analysis
    S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland and H. P. Langtangen
    American Journal of Neuroradiology, vol. 32, pp. 1474—1481, 2011
  153. Preconditioning Discretizations of Systems of Partial Differential Equations
    K.-A. Mardal and R. Winther
    Numerical Linear Algebra with Applications, vol. 18, pp. 1—40, 2011
  154. Susceptibility to Reentry in the Infarcted Heart Depends on the Active Fibroblast Density
    K. McDowell, H. Arevalo, M. M. Maleckar and N. Trayanova
    Biophysical Journal, vol. 110, pp. 1307—15, 2011
  155. A FEniCS-Based Programming Framework for Modeling Turbulent Flow by the Reynolds-Averaged Navier-Stokes Equations
    M. Mortensen, H. P. Langtangen and G. Wells
    Advances in Water Resources, vol. 34, pp. 1082—1101, 2011
  156. N-Version Benchmark Evaluation of Cardiac Tissue Electrophysiology Simulators
    S. Niederer, E. Kerfoot, A. Benson, M. Bernabeu, O. Bernus, C. Bradley, E. Cherry, R. Clayton, F. Fenton, A. Garny, E. Heidenreich, S. Land, M. M. Maleckar, P. Pathmanathan, G. Plank, J. Rodriguez, I. Roy, F. Sachse, G. Seemann, O. Skavhaug and N. Smith
    Philosophical Transactions of the Royal Society A, vol. 369, pp. 4331—51, 2011
  157. Order Optimal Preconditioners for Fully Implicit Runge-Kutta Schemes Applied to the Bidomain Equations
    T. K. Nilssen, G. A. Staff and K.-A. Mardal
    Numer. Methods Partial Differential Equations, vol. 27, pp. 1290—1312, 2011
  158. CSF Flow Through the Upper Cervical Spinal Canal in Chiari I Malformation
    S. Shah, V. Haughton and A. M. D. Río
    American Journal of Neuroradiology, vol. 32, pp. 1149—1153, 2011
  159. CSF Flow in Chiari I and Syringomyelia From the Perspective of Computational Fluid Dynamics
    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
    The Neuroradiology Journal, vol. 24, pp. 20—23, 2011
  160. Existence of Excitation Waves for a Collection of Cardiomyocytes Electrically Coupled to Fibroblasts
    A. Tveito, G. T. Lines, R. Artebrant, O. Skavhaug and M. M. Maleckar
    Mathematical Biosciences, pp. 79—86, 2011
  161. Unstable Eigenmodes As Possible Drivers for Cardiac Arrhythmias
    A. Tveito, G. T. Lines, O. Skavhaug and M. M. Maleckar
    Journal of the Royal Society Interface, vol. 8, pp. 1212—6, 2011
  162. Computing the Stability of Steady-State Solutions of Mathematical Models of the Electrical Activity in the Heart
    A. Tveito, O. Skavhaug, G. T. Lines and R. Artebrant
    Mathematical Biosciences and Engineering, vol. 41, pp. 611—618, 2011
  163. On Defining Candidate Drug Characteristics for Long-QT
    A. Tveito, G. T. Lines, P. Li and A. D. McCulloch
    Mathematical Biosciences and Engineering, vol. 8, pp. 861—873, 2011
  164. Direct Numerical Simulation of Transitional Flow in a Patient–Specific Intracranial Aneurysm
    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
    Journal of Biomechanics, vol. 44, pp. 2826—2832, 2011
  165. Modeling the Evaporation From a Thin Liquid Surface Beneath a Turbulent Boundary Layer
    T. Vik and B. A. P. Reif
    International Journal of Thermal Sciences, vol. 50, pp. 2311—2317, 2011
  166. Computational Aspects of Multiscale Simulation With the Lumped Particle Framework
    O. Al-Khayat and H. P. Langtangen
    Communications in Computational Physics, vol. 12, pp. 1257—1274, 2012
  167. Application of a Strong FSI Coupling Scheme for the Numerical Simulation of Bileaflet Mechanical Heart Valve Dynamics: Study of Wall Shear Stress on the Leaflets
    S. Annerel, J. Degroote, J. Vierendeels, T. Claessens, P. Ransbeck, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Segers and P. Verdonck
    Progress in Computational Fluid Dynamics, vol. 12, pp. 68—80, 2012
  168. A Fast Strong Coupling Algorithm for the Partitioned Fluid-Structure Interaction Simulation of BMHVs
    S. Annerel, J. Degroote, T. Claessens, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. v. Ransbeck, P. Seegers, P. Verdonck and J. Vierendeels
    Computer Methods in Biomechanics and Biomedical Engineering, vol. 15, pp. 1281—1312, 2012
  169. UPy: a Ubiquitous Computer Graphics Python API With Biological Modeling Applications
    L. Autin, G. Johnson, J. E. Hake, A. Olson and M. Sanner
    IEEE Computer Graphics and Applications, vol. 32, pp. 50—61, 2012
  170. Simulation of the Distortion Mechanisms Due to Non-Uniform Cooling in the Aluminum Extrusion Process
    S. Bikass, B. Andersson, A. Pilipenko and H. P. Langtangen
    International Journal of Thermal Sciences, vol. 52, pp. 50—58, 2012
  171. Simulation of Initial Cooling Rate Effect on the Extrudate Distortion in the Aluminum Extrusion Process
    S. Bikass, B. Andersson, A. Pilipenko and H. P. Langtangen
    Applied Thermal Engineering, vol. 40, pp. 326—336, 2012
  172. Multi-Scale Continuum Modeling of Biological Processes: From Molecular Electro-Diffusion to Sub-Cellular Signaling Transduction
    Y. Cheng, P. Kekenes-Huskey, J. E. Hake, M. Holst, J. McCammon and A. Michailova
    Computational Science & Discovery, vol. 5, pp. 015002, 2012
  173. Impact of Pulmonary Venous Locations on the Intra-Atrial Flow and Mitral Plane Velocity Profile
    S. K. Dahl, E. Thomassen, L. R. Hellevik and B. H. Skallerud
    Cardiovascular Engineering and Technology, vol. 3, pp. 2069—281, 2012
  174. FSI-Simulation of Asymmetric Mitral Valve Dynamics During Diastolic Filling
    S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, L. R. Hellevik and B. H. Skallerud
    Computer Methods in Biomechanics and Biomedical Engineering, vol. 15, pp. 121—130, 2012
  175. Stabilized Reduced Basis Approximation of Incompressible Three-Dimensional Navier–Stokes Equations in Parametrized Deformed Domains
    S. Deparis and A. E. Løvgren
    Journal of Scientific Computing, vol. 50, pp. 198—212, 2012
  176. Accuracy and Efficiency of Stencils for the Eikonal Equation in Earth Modelling
    T. Gillberg, Ø. Hjelle and A. M. Bruaset
    Computational Geosciences, vol. 16, pp. 933—952, 2012
  177. A Parallel Block Preconditioner for Large Scale Poroelasticity With Highly Heterogeneous Material Parameters
    J. B. Haga, H. P. Langtangen and H. Osnes
    Computational Geosciences, vol. 16, pp. 723—734, 2012
  178. Modeling Cardiac Calcium Sparks in a Three-Dimensional Reconstruction of a Calcium Release Unit
    J. E. Hake, A. G. Edwards, Z. Yu, P. M. Kekenes-Huskey, A. P. Michailova, J. A. McCammon, M. J. Holst, M. Hoshijima and A. McCulloch
    Journal of Physiology, vol. 590, pp. 4403—4422, 2012
  179. Mode Superposition With Submodeling
    H. Jakobsson and M. Larson
    International Journal for Numerical Methods in Engineering, vol. 90, pp. 739—751, 2012
  180. A High Order Discontinuous Galerkin Nitsche Method for Elliptic Problems With Fictitious Boundary
    A. Johansson and M. Larson
    Numerische Mathematik, pp. 1—22, 2012
  181. Finite-Element Estimation of Protein–ligand Association Rates With Post-Encounter Effects: Applications to Calcium Binding in Troponin C and SERCA
    P. M. Kekenes-Huskey, A. Gillette, J. E. Hake and J. A. McCammon
    Computational Science & Discovery, vol. 5, pp. 014015, 2012
  182. Modeling Effects of L-Type Ca2+ Current and Na+-Ca2+ Exchanger on Ca2+ Trigger Flux in Rabbit Myocytes With Realistic T-Tubule Geometries
    P. M. Kekenes-Huskey, Y. Cheng, J. E. Hake, F. B. Sachse, J. H. Bridge, M. J. Holst, J. A. McCammon, A. McCulloch and A. P. Michailova
    Frontiers in Physiology, vol. 3, pp. 351, 2012
  183. Continuous Piecewise Linear Finite Elements for the Kirchhoff-Love Plate Equation
    K. Larsson and M. Larson
    Numerische Mathematik, vol. 121, pp. 65—97, 2012
  184. Muscle Fibers in the Human Mitral Valve: Extent of Smooth Muscle and Implications for Dynamic Modelling
    I. S. Nordrum and B. H. Skallerud
    APMIS, vol. 120, pp. 484—494, 2012
  185. Uncertainty Analysis of Ventricular Mechanics Using the Probabilistic Collocation Method
    H. Osnes and J. Sundnes
    IEEE Transactions on Biomedical Engineering, vol. 59, pp. 2171—2179, 2012
  186. Ca(2+) Entry Through TRP-C Channels Regulates Fibroblast Biology in Chronic Atrial Fibrillation
    R. A. Rose, D. Belke, M. M. Maleckar and W. R. Giles
    Circulation, vol. 126, pp. 2039—2041, 2012
  187. Patient-Specific 3D Simulation of Cyclic CSF Flow at the Cranio-Cervical Region
    G. Rutkowska, V. Haughton, S. Linge and K.-A. Mardal
    American Journal of Neuroradiology, vol. 33, pp. 1756—1762, 2012
  188. An Adaptive Finite Element Splitting Method for the Incompressible Navier-Stokes Equations
    K. Selim, A. Logg and M. Larson
    Computer Methods in Applied Mechanics and Engineering, vol. 209-212, pp. 54—65, 2012
  189. Modeling Concentration Distribution and Deformation During Convection-Enhanced Drug Delivery Into Brain Tissue
    K.-H. Støverud, M. Darcis, R. Helmig and S. Hassanizadeh
    Transport in Porous Media, vol. 92, pp. 119—143, 2012
  190. Instabilities of the Resting State in a Mathematical Model of Calcium Concentrations in Cardiac Myocytes
    A. Tveito, G. T. Lines, J. E. Hake and A. G. Edwards
    Mathematical Biosciences, vol. 236, pp. 97–107, 2012
  191. A Note on a Possible Pro-Arrhythmic Property of Anti-Arrhythmic Drugs Aimed at Improving Gap-Junction Coupling
    A. Tveito, G. T. Lines and M. M. Maleckar
    Biophysical Journal, vol. 102, pp. 231—237, 2012
  192. An Analysis of the Shock Strength Needed to Achieve Defibrillation in a Simplified Mathematical Model of Cardiac Tissue
    A. Tveito, G. T. Lines, M. E. Rognes and M. M. Maleckar
    International Journal of Numerical Analysis and Modeling, vol. 9, pp. 644—657, 2012
  193. Slow Calcium-Depolarization-Calcium Waves May Initiate Fast Local Depolarization Waves in Ventricular Tissue
    A. Tveito, G. Lines, A. G. Edwards, M. M. Maleckar, A. Michailova, J. E. Hake and A. McCulloch
    Progress in Biophysics and Molecular Biology, vol. 110, pp. 295–304, 2012
  194. Accelerating a 3D Finite-Difference Earthquake Simulation With a C-to-CUDA Translator
    D. Unat, J. Zhou, Y. Cui, S. Baden and X. Cai
    Computing in Science & Engineering, vol. 14, pp. 48—59, 2012
  195. Modelling of Fluid–solid Interactions Using an Adaptive Mesh Fluid Model Coupled With a Combined Finite–discrete Element Model
    A. Vir'e, J. Xiang, F. Milthaler, P. E. Farrell, M. D. Piggott, J.-P. Latham, D. Pavlidis and C. C. Pain
    Ocean Dynamics, vol. 62, pp. 1487—1501, 2012
  196. Electromechanical Feedback With Reduced Cellular Connectivity Alters Electrical Activity in an Infarct Injured Left Ventricle - a Finite Element Model Study
    S. Wall, J. Guccione, M. Ratcliffe and J. Sundnes
    American Journal of Physiology - Heart and Circulatory Physiology, pp. H206—H214, 2012
  197. Simulating Cardiac Electrophysiology in the Era of GPU-Cluster Computing
    J. Chai, M. Wen, N. Wu, D. Huang, J. Yang, X. Cai, C. Zhang and Q. Yang
    IEICE Transactions on Information and Systems, vol. E96-D, pp. 2587—2595, 2013
  198. Resource-Efficient Utilization of CPU/GPU-Based Heterogeneous Supercomputers for Bayesian Phylogenetic Inference
    J. Chai, H. Su, M. Wen, X. Cai, N. Wu and C. Zhang
    The Journal of Supercomputing, vol. 66, pp. 364—380, 2013
  199. Effect of the Central Canal in the Spinal Cord on Fluid Movement Within the Cord
    I. N. Drøsdal, K.-A. Mardal, K.-H. Støverud and V. Haughton
    The Neuroradiology Journal, vol. 26, pp. 585—590, 2013
  200. A Study of Wall Shear Stress in 12 Aneurysms With Respect to Different Viscosity Models and Flow Conditions
    Ø. Evju, K. Valen-Sendstad and K.-A. Mardal
    Journal of Biomechanics, vol. 46, pp. 2802—2808, 2013
  201. Automated Derivation of the Adjoint of High-Level Transient Finite Element Programs
    P. Farrell, D. Ham, S. Funke and M. E. Rognes
    SIAM Journal on Scientific Computing, vol. 35, pp. 369—393, 2013
  202. A High Order Discontinuous Galerkin Nitsche Method With Fictitous Boundary
    A. Johansson and M. Larson
    Numerische Mathematik, vol. 123, pp. 607—628, 2013
  203. Molecular and Subcellular-Scale Modeling of Nucleotide Diffusion in the Cardiac Myofilament Lattice
    P. M. Kekenes-Huskey, T. Liao, A. K. Gillette, J. E. Hake, Y. Zhang, A. P. Michailova, A. McCulloch and A. McCammon
    Biophysical Journal, vol. 105, pp. 2130, 2013
  204. Patient-Specific Models of Cardiac Biomechanics
    A. Krishnamurthy, C. T. Villongco, J. Chuang, L. R. Frank, V. Nigam, E. Belezzuoli, P. Stark, D. E. Krummen, S. Narayan, J. H. Omens and A. McCulloch
    Journal of Computational Physics, vol. 244, pp. 4—21, 2013
  205. Algisyl-LVR With Coronary Artery Bypass Grafting Reduces Left Ventricular Wall Stress and Improves Function in the Failing Human Heart
    L. C. Lee, S. Wall, D. Klepach, L. Ge, Z. Zhang, R. Lee, A. Hinson, J. H. Gorman, R. Gorman and J. Guccione
    International Journal of Cardiology, vol. 168, pp. 2022—2028, 2013
  206. Velocity Profiles in the Human Ductus Venosus: a Numerical Fluid Structure Interaction Study
    P. R. Leinan, J. Degroote, T. Kiserud, B. H. Skallerud, J. Vierendeels and L. R. Hellevik
    Biomechanics and Modeling in Mechanobiology, vol. 12, pp. 1019—1035, 2013
  207. Human Ductus Venosus Velocity Profiles in the First Trimester
    P. R. Leinan, T. Kiserud and L. R. Hellevik
    Cardiovascular Engineering and Technology, vol. 4, pp. 257—266, 2013
  208. Mathematical Models of Cardiac Pacemaking Function
    P. Li, G. T. Lines, M. Maleckar and A. Tveito
    Frontiers in Physics, vol. 1, 2013
  209. Simulating CSF Flow Dynamics in the Normal and the Chiari I Subarachnoid Space During Rest and Exertion
    S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
    American Journal of Neuroradiology, vol. 34, pp. 41—15, 2013
  210. Estimation of CSF Flow Resistance in the Upper Cervical Spine
    K.-A. Mardal, G. Rutkowska, S. Linge and V. Haughton
    The Neuroradiology Journal, vol. 3, pp. 49—53, 2013
  211. A Uniformly Stable Fortin Operator for the Taylor–Hood Element
    K.-A. Mardal, J. Schoberl and R. Winther
    Numerische Mathematik, vol. 123, pp. 537—551, 2013
  212. Efficient Implementation of Finite Element Methods on Nonmatching and Overlapping Meshes in Three Dimensions
    A. Massing, M. Larson and A. Logg
    SIAM Journal on Scientific Computing, vol. 35, pp. C23—C47, 2013
  213. Modeling and Predicting Performance of High Performance Computing Applications on Hardware Accelerators
    M. R. Meswani, L. Carrington, D. Unat, A. Snavely, S. Baden and S. Poole
    International Journal of High Performance Computing Applications, vol. 27, pp. 89—108, 2013
  214. Numerical Simulation of Water Resources Problems: Models, Methods, and Trends
    C. T. Miller, C. N. Dawson, M. W. Farthing, T. Y. Hou, J. Huang, C. E. Kees, C. T. Kelley and H. P. Langtangen
    Advances in Water Resources, 2013
  215. Analysis of the Minimal Residual Method Applied to Ill-Posed Optimality Systems
    B. F. Nielsen and K.-A. Mardal
    SIAM Journal on Scientific Computing, vol. 35, pp. A785—A814, 2013
  216. Computing Ischemic Regions in the Heart With the Bidomain Model; First Steps Towards Validation
    B. F. Nielsen, O. M. Lysaker and P. Grøttum
    IEEE Transactions on Medical Imaging, vol. 32, pp. 1085—1096, 2013
  217. Publishing Scientific Software Matters
    C. Pradal, G. Varoquaux and H. P. Langtangen
    Journal of Compuational Science, vol. 4, pp. 311—312, 2013
  218. Automating the Solution of PDEs on the Sphere and Other Manifolds in FEniCS 1.2
    M. E. Rognes, D. Ham, C. Cotter and A. McRae
    Geoscientific Model Development, pp. 2099—2119, 2013
  219. Automated Goal-Oriented Error Control I: Stationary Variational Problems
    M. E. Rognes and A. Logg
    SIAM Journal on Scientific Computing, vol. 35, pp. 173–193, 2013
  220. Variability of Computational Fluid Dynamics Solutions for Pressure and Flow in a Giant Aneurysm: the ASME 2012 Summer Bioengineering Conference CFD Challenge.
    D. A. Steinman, Y. Hoi, P. Fahy, L. Morris, M. Walsh, N. Aristokleous, A. Anayiotos, Y. Papaharilaou, A. Arzani, S. Shadden, P. Berg, G. Janiga, J. Bols, P. Segers, N. Bressloff, M. Cibis, F. Gijsen, S. Cito, J. Pallareacutes, L. Browne, J. Costelloe, A. Lynch, J. Degroote, J. Vierendeels, W. Fu, A. Qiao, S. Hodis, D. Kallmes, H. Kalsi, Q. Long, V. Kheyfets, E. Fino, K. Kono, A. Malek, A. Lauric, P. Menon, K. Pekkan, M. E. Moghadam, A. Marsden, M. Oshima, K. Katagiri, V. Peiffer, Y. Mohamied, S. Sherwin, J. Schaller, L. Goubergrits, G. Usera, M. Mendina, D. Habets, K. Valen-Sendstad, J. Xiang, H. Meng, Y. Yu, G. Karniadakis, N. Shaffer and F. Loth
    Journal of Biomedical Engineering, vol. 135, 2013
  221. Improved Discretisation and Linearisation of Active Tension in Strongly Coupled Cardiac Electro-Mechanics Simulations
    J. Sundnes, S. Wall, H. Osnes, T. Thorvaldsen and A. McCulloch
    Computer Methods in Biomechanics and Biomedical Engineering, vol. 0, pp. 1—12, 2013
  222. High-Resolution Computational Fluid Dynamics Detects High-Frequency Velocity Fluctuations in Bifurcation, But Not Sidewall, Aneurysms of the Middle Cerebral Artery
    K. Valen-Sendstad, K.-A. Mardal and D. A. Steinman
    Journal of Biomechanics, vol. 18;, pp. 402—7, 2013
  223. Benchmarking FEniCS for Mantle Convection Simulations
    L. Vynnytska, M. E. Rognes and S. R. Clark
    Computers & Geosciences, vol. 50, pp. 95–105, 2013
  224. Balancing Efficiency and Accuracy for Sediment Transport Simulations
    W. Wei, S. R. Clark, H. Su, M. Wen and X. Cai
    Computational Science & Discovery, vol. 6, pp. 015011, 2013
  225. Benchmarking Electrophysiological Models of Human Atrial Myocytes
    M. Wilhelms, H. Hettmann, M. Maleckar, J. Koivumäki, O. Dössel and G. Seemann
    Frontiers in Computational Physiology and Medicine, vol. 3, 2013
  226. Unified Form Language: a Domain-Specific Language for Weak Formulations of Partial Differential Equations
    M. S. Alnaes, A. Logg, K. B. Ølgaard, M. E. Rognes and G. N. Wells
    ACM Transactions on Mathematical Software, vol. 40, 2014
  227. Variational formulation of curved beams in global coordinates
    P. Hansbo, M. G. Larson and K. Larsson
    Computational Mechanics, vol. 53, pp. 611—623, 2014
  228. Periodic table of the Finite Elements
    D. Arnold and A. Logg
    SIAM News, vol. November issue, 2014
  229. A Stabilized Nitsche Fictitious Domain Method for the Stokes Problem
    A. Massing, M. G. Larson, A. Logg and M. E. Rognes
    Journal of Scientific Computing, vol. 61, pp. 604—628, 2014
  230. Finite element modeling of a linear membrane shell problem using tangential differential calculus
    P. Hansbo and M. G. Larson
    Computer Methods in Applied Mechanics and Engineering, vol. 270, pp. 1 — 14, 2014
  231. Toward a hierarchy of mechanisms in CaMKII-mediated arrhythmia
    K. P. Vincent, A. D. McCulloch and A. G. Edwards
    Frontiers in Pharmacology, vol. 5, 2014
  232. High Efficient Sedimentary Basin Simulations on Hybrid CPU-GPU Clusters
    M. Wen, H. Su, W. Wei, N. Wu, X. Cai and C. Zhang
    Cluster Computing, vol. 17, pp. 359—369, 2014
  233. A cut finite element method for a Stokes interface problem
    P. Hansbo, M. G. Larson and S. Zahedi
    Applied Numerical Mathematics, vol. 85, pp. 90 — 114, 2014
  234. Parameter Choice Strategies for Multi-Penalty Regularization
    V. Naumova, M. Fornasier and S. Pereverzyev
    SIAM Journal on Numerical Analysis, vol. 52, pp. 1770—1794, 2014
  235. A computational pipeline for quantification of mouse myocardial stiffness parameters
    O. Nordbø, P. Lamata, S. Land, S. Niederer, J. M. Aronsen, W. E. Louch, I. Sjaastad, H. Martens, A. B. Gjuvsland, K. Tøndel, H. Torp, M. Lohezic, J. E. Schneider, E. W. Remme, N. Smith, S. W. Omholt and J. O. Vik
    Comput. Biol. Med., vol. 53, pp. 65–75, 2014
  236. Assessment of Spurious Mixing in Adaptive Mesh Simulations of the Two-Dimensional Lock-Exchange
    H. R. Hiester, M. D. Piggott, P. E. Farrell and P. A. Allison
    Ocean Modelling, vol. 73, pp. 30—44, 2014
  237. Improved Discretisation and Linearisation of Active Tension in Strongly Coupled Cardiac Electro-Mechanics Simulations
    J. Sundnes, S. Wall, H. Osnes, T. Thorvaldsen and A. D. McCulloch
    Computer Methods in Biomechanics and Biomedical Engineering, vol. 17, pp. 604—15, 2014
  238. Global structure of sloppiness in a nonlinear model
    V. Tafintseva, K. Tøndel, A. Ponosov and H. Martens
    J. Chemometrics, vol. 28, pp. 645—655, 2014
  239. The Immersed Body Supermeshing Method for Modelling Reactor Physics Problems With Complex Internal Structures
    A. G. Buchan, P. E. Farrell, G. J. Gorman, A. J. H. Goddard, M. D. Eaton, E. T. Nygaard, P. L. Angelo, R. P. Smedley-Stevenson, S. R. Merton and P. N. Smith
    Annals of Nuclear Energy, vol. 63, pp. 399—408, 2014
  240. Locking Free Quadrilateral Continuous/discontinuous Finite Element Methods for the Reissner-Mindlin Plate
    P. Hansbo and M. G. Larson
    Computer Methods in Applied Mechanics and Engineering, vol. 269, pp. 381—393, 2014
  241. Analyzing complex mathematical model behavior by Partial Least Squares Regression-based Multivariate Metamodeling
    K. Tøndel and H. Martens
    Wiley Interdisciplinary Reviews: Computational Statistics, vol. 6, pp. 440–475, 2014
  242. Group-Wise Construction of Reduced Models for Understanding and Characterization of Pulmonary Blood Flows From Medical Images
    K. S. Mcleod, R. Guibert, A. Caiazzo, T. Mansi, M. A. Fernàndez, M. Sermesant, X. Pennec, I. E. Vignon-Clementel, Y. Boudjemline and J.-F. Gerbeau
    Medical Image Analysis, vol. 18, pp. 63—82, 2014
  243. Minimization of Multi-Penalty Functionals by Alternating Iterative Thresholding and Optimal Parameter Choices
    V. Naumova and S. Peter
    Inverse Problems, vol. 30, pp. 1—35, 2014
  244. Insight into Model Mechanisms through Automatic Parameter Fitting: A new Methodological Framework for Model Development
    K. Tøndel, S. A. Niederer, S. Land and N. P. Smith
    BMC Systems Biology, vol. 8, pp. 59, 2014
  245. Performance Modeling of Serial and Parallel Implementations of the Fractional Adams-Bashforth-Moulton Method
    W. Zhang, W. Wei and X. Cai
    Fractional Calculus and Applied Analysis, vol. 17, pp. 617—637, 2014
  246. Na+ Current Expression in Human Atrial Myofibroblasts: Its Identity and Functional Consequences
    J. Koivumäki, R. Clark, D. Belke, C. Kondo, P. Fedak, M. Maleckar and W. R. Giles
    Frontiers in Physiology, vol. 5, pp. 275, 2014
  247. A novel computational model of mouse myocyte electrophysiology to assess the synergy between Na+ loading and CaMKII
    S. Morotti, A. G. Edwards, A. D. McCulloch, D. M. Bers and E. Grandi
    The Journal of physiology, vol. 592, pp. 1181—1197, 2014
  248. In Silico Screening of the Key Cellular Remodeling Targets in Chronic Atrial Fibrillation
    J. Koivumäki, G. Seemann, M. Maleckar and P. Tavi
    PLoS Computational Biology, vol. 10(5), 2014
  249. A Stabilized Nitsche Overlapping Mesh Method for the Stokes Problem
    A. Massing, M. G. Larson, A. Logg and M. E. Rognes
    Numerische Mathematik, vol. 128, pp. 73—101, 2014
  250. A Framework for the Automation of Generalised Stability Theory
    P. E. Farrell, C. Cotter and S. W. Funke
    SIAM Journal on Scientific Computing, vol. 36, pp. C25–C48, 2014
  251. Investigations of the NaVβ1b Sodium Channel Subunit in Human Ventricle; Functional Characterization of the H162P Brugada Syndrome Mutant
    L. Yuan, J. Koivumäki, B. Liang, L. G. Lorentzen, J. H. Svendsen, J. Tfelt-Hansen, M. Maleckar, N. Schmitt, M. S. Olesen and T. Jespersen
    Heart and Circulatory Physiology, vol. 306, pp. H1204—H1212, 2014
  252. Time-Fractional Heat Equations and Negative Absolute Temperatures
    W. Zhang, X. Cai and S. Holm
    Computers & Mathematics with Applications, vol. 67, pp. 164—171, 2014
  253. Computational modeling of subcellular transport and signaling
    J. E. Hake, P. M. Kekenes-Huskey and A. D. McCulloch
    Curr Opin Struct Biol, vol. 25C, pp. 92–97, 2014
  254. Mind the Gap: Impact of Computational Fluid Dynamics Solution Strategy on Prediction of Intracranial Aneurysm Hemodynamics and Rupture Status Indicators
    K. Valen-Sendstad and D. A. Steinman
    American Journal of Neuroradiology, vol. 35, pp. 536—543, 2014
  255. Assessment of the presumed mapping function approach for the stationary laminar flamelet modelling of reacting double scalar mixing layers
    A. E. Sayed, M. Mortensen and J. Z. Wen
    Combustion Theory and Modelling, vol. 18, pp. 552—581, 2014
  256. Tidal Turbine Array Optimisation Using the Adjoint Approach
    S. W. Funke, P. E. Farrell and M. D. Piggott
    Renewable Energy, vol. 63, pp. 658—673, 2014
  257. Non-equilibrium reactivation of Na+ current drives early afterdepolarizations in mouse ventricle
    A. G. Edwards, E. Grandi, J. E. Hake, S. Patel, P. Li, S. Miyamoto, J. H. Omens, J. H. Brown, D. M. Bers and A. D. McCulloch
    Circulation: Arrhythmia and Electrophysiology, 2014
  258. CutFEM: Discretizing Geometry and Partial Differential Equations
    E. Burman, S. Claus, P. Hansbo, M. G. Larson and A. Massing
    Int. J. Numer. Meth. Eng., pp. 1—36, 2014
  259. Numerical Simulations of the Pulsating Flow of Cerebrospinal Fluid Flow in the Cervical Spinal Canal of a Chiari Patient
    A. Helgeland, K.-A. Mardal, V. Haughton and B. A. P. Reif
    Journal of Biomechanics, vol. 47, pp. 1082—90, 2014
  260. Effect of Cranio-Vertebral Decompression on CSF Dynamics in Chiari I Malformation Studied With Computational Fluid Dynamics
    S. Linge, K.-A. Mardal, A. Helgeland, J. Heiss and V. Haughton
    Journal of Neurosurgery, vol. 21, pp. 559—564, 2014
  261. A Multilevel Solver for Gaussian Constrained CMB Realizations
    D. S. Seljebotn, K.-A. Mardal, J. Jewell, H. K. Eriksen and P. Bull
    The Astrophysical Journal Supplement Series, vol. 210, 2014

Books

  1. Python Scripting for Computational Science
    H. P. Langtangen
    Springer, 2008
  2. A Primer on Scientific Programming With Python
    H. P. Langtangen
    Springer, 2009
  3. Statistical Theory and Modeling for Turbulent Flows
    P. A. Durbin and B. A. P. Reif
    Wiley, 2010
  4. Elements of Scientific Computing
    A. Tveito, H. P. Langtangen, B. F. Nielsen and X. Cai
    Springer, 2010
  5. A Primer on Scientific Programming With Python
    H. P. Langtangen
    Springer, 2011
  6. Computational Fluid Dynamics for Engineers
    B. Andersson, R. Andersson, L. Håkansson, M. Mortensen, R. Sudiyo and B. v. Wachem
    Cambridge University Press, 2012
  7. A Primer on Scientific Programming With Python
    H. P. Langtangen
    Springer, 2012
  8. The Finite Element Method: Theory, Implementation, and Applications
    M. Larson and F. Bengzon
    Springer, 2013
  9. A Primer on Scientific Programming with Python
    H. P. Langtangen
    Springer, 2014

Edited Books

  1. Quantitative Information Fusion for Hydrological Sciences
    X. Cai and J. T.-C. Yeh
    Springer, 2008
  2. MekIT´09. Fifth National Conference on Computational Mechanics
    B. H. Skallerud and H. I. Andersson
    Tapir Academic Press, 2009
  3. Scale Space and Variational Methods in Computer Vision
    X.-C. Tai, K. Mørken, O. M. Lysaker and K.-A. Lie
    Springer, 2009
  4. Simula Research Laboratory — by Thinking Constantly About It
    A. Tveito, A. M. Bruaset and O. Lysne
    Springer, 2009
  5. Automated Solution of Differential Equations by the Finite Element Method
    A. Logg, K.-A. Mardal and G. N. Wells
    Springer, 2012
  6. Conversations About Challenges in Computing
    A. M. Bruaset and A. Tveito
    Springer, 2013
  7. Proceedings of the 26th Nordic Seminar on Computational Machanics
    A. Logg, K.-A. Mardal and A. Massing
    Published Electronically, 2013

Chapters in Books

  1. A Hybrid Approach to Efficient Finite Element Code Development
    A. Logg, K.-A. Mardal, M. S. Alnæs, H. P. Langtangen and O. Skavhaug
    in Petascale Computing – Algorithms and Applications, Edited by D. A. Bader, Chapman and Hall, chapter 19, 2007
  2. The Reduced Basis Element Method for Fluid Flows
    A. E. Løvgren, E. M. Rønquist and Y. Maday
    in Analysis and Simulation of Fluid Dynamics, Edited by C. Calgaro, J.-F. Coulombel and T. Goudon, Birkhäuser, chapter 8, pp. 129—154, 2007
  3. A Multilevel Greedy Algorithm for the Satisfiability Problem
    N. Bouhmala and X. Cai
    in Advances in Greedy Algorithms, Edited by W. Bednorz, IN-TECH Education and Publishing, chapter 3, pp. 39—54, 2008
  4. On the Efficiency of Python for High-Performance Computing: a Case Study Involving Stencil Updates for Partial Differential Equations
    H. P. Langtangen and X. Cai
    in Modeling, Simulation and Optimization of Complex Processes, Edited by H. G. Bock, E. Kostina, H. X. Phu and R. Rannacher, Springer, pp. 337—358, 2008
  5. Att Lösa En Differentialekvation
    A. Logg
    in Människor och matematik. Läsebok för nyfikna, Edited by O. Helenius and K. Wallby, Nationellt centrum för matematikutbildning, NCM, chapter 3, pp. 95—110, 2008
  6. Turning Rocks Into Knowledge — Experiences and Results From an Industrial Collaboration in Computational Geosciences
    A. M. Bruaset
    in Simula Research Laboratory — by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 40, pp. 553—600, 2009
  7. Scientific Computing: Why - How - What - What's Next
    H. P. Langtangen and J. Sundnes
    in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 18, pp. 237—248, 2009
  8. The Hamming Experience
    H. P. Langtangen and O. Lysne
    in Simula Research Laboratory — by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 5, pp. 33—36, 2009
  9. Computer Simulations of the Heart
    G. T. Lines and J. Sundnes
    in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 20, pp. 259—276, 2009
  10. Past and Future Perspectives on Scientific Software
    A. Logg, H. P. Langtangen and X. Cai
    in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 23, pp. 321—362, 2009
  11. Can ECG Recordings and Mathematics Tell the Condition of Your Heart?
    B. F. Nielsen, O. M. Lysaker, P. Grøttum, K.-A. Mardal, A. Tveito, C. Tarrou, K. H. Haugaa, A. Abildgaard and J. G. Fjeld
    in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 22, pp. 287—319, 2009
  12. A Computational Framework for Patient-Specific Multi-Scale Cardiac Modeling
    J. Aguado-Sierra, R. C. P. Kerckhoffs, F. V. Lionetti, D. Hunt, C. Villongco, M. Gonzales, S. G. Campbell and A. D. McCulloch
    in Patient-Specific Modeling of the Cardiovascular System; Technology-Driven Personalized Medicine, Edited by R. C. Kerckhoffs, Springer, chapter 12, pp. 202—223, 2010
  13. The Mjølnir Tsunami
    S. Glimsdal, G. K. Pedersen, H. P. Langtangen, V. Shuvalov and H. Dypvik
    in The Mjølnir Impact Event and its Consequences, Edited by F. Tsikalas, H. Dypvik and M. Smelror, Springer, chapter 10, pp. 257—271, 2010
  14. Diagnostic Properties of Structure Tensors in Turbulent Flows,
    D. G. E. Grigoriadis, C. A. Langer and S. C. Kassinos
    in Direct and Large-Eddy Simulation VII, Edited by V. Armenio, B. Geurts and J. Fröhlich, Springer, 2010
  15. Parallel Computing Engines for Subsurface Imaging Technologies
    J. T.-C. Yeh, X. Cai, H. P. Langtangen, J. Zhu and C.-F. Ni
    in Advanced Computational Infrastructures for Parallel and Distributed Adaptive Applications, Edited by X. L. M. Parashar, John Wiley & Sons, Inc., chapter 3, pp. 29—43, 2010
  16. On the Construction of Preconditioners for Systems of Partial Differental Equations
    K.-A. Mardal and R. Winther
    in Efficient preconditioning methods for elliptic partial differential equations, Edited by O. Axelsson and J. Karatson, Bentham Science Publishers, 2011
  17. Construction of Preconditioners by Mapping Properties for Systems of Partial Differential Equations
    K.-A. Mardal and R. Winther
    in Efficient preconditioning methods for elliptic partial differential equations, Edited by O. Axelsson and J. Karatson, Bentham Science Publishers, chapter 4, pp. 65—84, 2011
  18. UFC: a Finite Element Code Generation Interface
    M. S. Alnæs, A. Logg and K.-A. Mardal
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 16, pp. 279—298, 2012
  19. UFL: a Finite Element Form Language
    M. S. Alnæs
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 17, pp. 299—334, 2012
  20. SyFi and SFC: Symbolic Finite Elements and Form Compilation
    M. S. Alnæs and K.-A. Mardal
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 15, pp. 269—278, 2012
  21. Lessons Learned in Mixed Language Programming
    J. E. Hake and K.-A. Mardal
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 19, pp. 363—381, 2012
  22. A Coupled Stochastic and Deterministic Model of Ca2+ Dynamics in the Dyadic Cleft
    J. E. Hake
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 33, pp. 611—627, 2012
  23. Constructing General Reference Finite Elements
    R. C. Kirby and K.-A. Mardal
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 4, pp. 117—128, 2012
  24. FErari: an Optimizing Compiler for Variational Forms
    R. C. Kirby and A. Logg
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 12, pp. 235—243, 2012
  25. Finite Element Variational Forms
    R. C. Kirby and A. Logg
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 5, pp. 129—136, 2012
  26. Common and Unusual Finite Elements
    R. C. Kirby, A. Logg, M. E. Rognes and A. R. Terrel
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 3, pp. 91—116, 2012
  27. Tensor Representation of Finite Element Variational Forms
    R. C. Kirby and A. Logg
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 8, pp. 157—167, 2012
  28. Discrete Optimization of Finite Element Matrix Evaluation
    R. C. Kirby, M. G. Knepley, A. Logg, L. R. Scott and A. R. Terrel
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 9, pp. 161—168, 2012
  29. The Finite Element Method
    R. C. Kirby and A. Logg
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 2, pp. 73—90, 2012
  30. A FEniCS Tutorial
    H. P. Langtangen
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 1, pp. 1—70, 2012
  31. Error Estimation and Adaptivity
    M. Larson and F. Bengzon
    in Encyclopedia of applied and computational mathematics, Edited by B. Engquist, Springer, chapter 0, pp. 0—0, 2012
  32. DOLFIN: a C++/Python Finite Element Library
    A. Logg, G. N. Wells and J. E. Hake
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 10, pp. 173—225, 2012
  33. Finite Element Assembly
    A. Logg, K.-A. Mardal and G. N. Wells
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 6, pp. 137—142, 2012
  34. FFC: the FEniCS Form Compiler
    A. Logg, K. B. Ølgaard, M. E. Rognes and G. N. Wells
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 11, pp. 223—234, 2012
  35. Block Preconditioning of Systems of PDEs
    K.-A. Mardal and J. B. Haga
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 35, pp. 643—654, 2012
  36. Simulation of Transitional Flows
    M. Mortensen, K.-A. Mardal and H. P. Langtangen
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 22, pp. 419—438, 2012
  37. A Computational Framework for Nonlinear Elasticity
    H. Narayanan
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 27, pp. 527—544, 2012
  38. Automated Testing of Saddle Point Stability Conditions
    M. E. Rognes
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 36, pp. 655—670, 2012
  39. An Adaptive Finite Element Solver for Fluid–structure Interaction Problems
    K. Selim
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 29, pp. 554—572, 2012
  40. Cerebrospinal Fluid Flow
    S. Støle-Hentschel, S. Linge, A. E. Løvgren and K.-A. Mardal
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 24, pp. 455—470, 2012
  41. A Comparison of Some Common Finite Element Schemes for the Incompressible Navier-Stokes Equations
    K. Valen-Sendstad, A. Logg, K.-A. Mardal, H. Narayanan and M. Mortensen
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 21, pp. 395—418, 2012
  42. Computational Hemodynamics
    K. Valen-Sendstad, K.-A. Mardal and A. Logg
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 23, pp. 439—454, 2012
  43. Dynamic Simulations of Convection in the Earth's Mantle
    L. Vynnytska, S. R. Clark and M. E. Rognes
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 31, pp. 587—602, 2012
  44. Instant: Just-in-Time Compilation of C/C++ in Python
    I. Wilbers, K.-A. Mardal and M. S. Alnæs
    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, chapter 14, pp. 253—268, 2012
  45. Calcium Signaling in Cardiomyocyte Models With Realistic Geometries
    A. P. Michailova, A. G. Edwards, J. E. Hake, M. Hoshijima and A. McCulloch
    in Cardiac Electrophysiology: From Cell to Bedside, Edited by D. Zipes and J. Jalife, Elsevier, chapter 33, pp. 33.1—33.10, 2013

Refereed Proceedings

  1. Lattice Boltzmann Method and Turbidity Flow Modeling
    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
    in MekIT'07 : Fourth National Conference in Computational Mechanics, 2007
  2. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
    M. S. Alnæs, K.-A. Mardal and J. Sundnes
    in MekIT-07, Fourth national conference on Computational Mechanics, 2007
  3. Benchmark of a Tsunami Run-Up Code
    R. E. Bredesen, H. P. Langtangen and G. K. Pedersen
    in MekIT-07, Fourth national conference on Computational Mechanics, 2007
  4. Making Hybrid Tsunami Simulators in a Parallel Software Framework
    X. Cai and H. P. Langtangen
    in Proceedings of the PARA'06 Workshop, 2007
  5. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow and Heat Transfer in Sedimentary Basins
    J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
    in MekIT-07, Fourth national conference on Computational Mechanics, 2007
  6. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
    L. R. Hellevik, S. K. Dahl and B. H. Skallerud
    in MekIT-07, Fourth national conference on Computational Mechanics, 2007
  7. A Case Study in High-Performance Mixed-Language Programming
    H. P. Langtangen
    in Applied Parallel Computing - State of the Art in Scientific Computing (PARA'06), 2007
  8. Efficient Representation of Computational Meshes
    A. Logg
    in MekIT-07, Fourth national conference on Computational Mechanics, 2007
  9. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
    S. K. Dahl, L. R. Hellevik and B. H. Skallerud
    in 8th world Congress on Computational Mechanics/5th European Congress on Computational Methods in Applied sciences and Engineering, Venice, Italy, 2008
  10. Lagrangian Particle Dispersion in Turbulent Flow Over a Wall Mounted Obstacle
    D. G. E. Grigoriadis and S. C. Kassinos
    in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
  11. Efficient Simulations of Wall Bounded Magnetohydrodynamics Flows
    D. G. E. Grigoriadis and S. C. Kassinos
    in 6th GRACN International Congress on Computational Mechanics, 2008
  12. Modelling Adverse Pressure-Gradient Boundary Layers Using the Nonlinear V2F Model in Combinationwith a Structure Based Model
    M. Mortensen, B. A. P. Reif and C. A. Langer
    in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
  13. Effect of Embedded Defects in Pipelines Subjected to Plastic Strains During Operation
    E. Olsø, E. Berg, K. H. Holthe, B. Nyhus, B. H. Skallerud, C. Thaulow and E. Østby
    in Proceedings of the Eighteenth (2008) International Offshore and Polar Engineering Conference, 2008
  14. Modeling Particle Deposition in the Human Lungs
    H. Radhakrishnan and S. C. Kassinos
    in 6th GRACM International Congress on Computational Mechanics, 2008
  15. Using LES to Model Turbulent Particle Transport in Lungs
    H. Radhakrishnan and S. C. Kassinos
    in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
  16. Multiscale Modeling of the Acoustic Properties of Lung Parenchyma
    M. Siklosi, O. Jensen, R. Tew and A. Logg
    in Modelling of the Respiratory System Biomechanical, Computational and Mathematical Aspects, 2008
  17. Space-Time Correlations From a 143 Hot-Wire Rake in High Reynold Number Turbulent Boundary Layer
    M. Tutkun, W. K. George, J. Delville, J. M. Foucaut, S. Coudert and M. Stanislas
    in AIAA Theoretical Fluid Mechanics Conference, 2008
  18. Turbulent Effects of Liquid Metal Flow Under Strong Fringing Magnetic Fields
    X. Albets-Chico, D. G. E. Grigoriadis, S. C. Kassinos and B. Knaepen
    in 6th International Symposium on Turbulence and Shear Flow Phenomena, 2009
  19. Tracking Pathogenic Biological Agents in Air - a Case Study of the Outbreak of Legionellosis in Norway
    J. M. Blatny, E. M. Fykse, B. A. P. Reif, Ø. Andreassen, J. S. Olsen and V. Waagen
    in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
  20. Teaching PhD Students Effective Communication of Scientific Research
    A. M. Bruaset, M. M. Sundet, M. Alley, M. D. Marshall and S. E. Zappe
    in ICERI2009 Proceedings CD, 2009
  21. Bioinformatics` Challenges to Computer Science: Bioinformatics Tools and Biomedical Modeling
    M. Cannataro, R. W. dos Santos and J. Sundnes
    in Computational Science – ICCS 2009, 2009
  22. A Flexible Stochastic Approach to Constraining Uncertainty in Forward Stratigraphic Models
    S. R. Clark, A. M. Bruaset, T. O. Sømme and T. M. Løseth
    in 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 2009
  23. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
    S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
    in Proceedings of MekIT'09, 2009
  24. Numerical Simulation of Low-Velocity Impact Loading of Polymeric Materials
    H. Daiyan, F. Grytten, E. Andreassen, O. V. Lyngstad, H. Osnes, R. Gaarder and E. Hinrichsen
    in Proceedings of the 7th European Conference, 2009
  25. Consequence Management Challenges After Indoor Dispersion of a Toxic Chemical
    M. Endregård, B. A. P. Reif, T. Vik and O. Busmundrud
    in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
  26. Predicting Particle Deposition in the Human Airways With RANS
    H. E. Fossum and B. A. P. Reif
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
  27. Extension of the Immersed Boundary Method for Liquid-Metal Magnetohydrodynamics
    D. G. E. Grigoriadis and S. C. Kassinos
    in Immersed Boundary Methods: Current status and Future Research Directions, 2009
  28. On the Performance of an Algebraic Multigrid Preconditioner for the Pressure Equation With Highly Discontinuous Media
    J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
    in Proceedings of MekIT'09, 2009
  29. On Material Modelling of Umbilical Vein
    P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
    in MekIT'09: Fifth National Conference on Computational Mechanics Trondheim 26-27 May 2009, 2009
  30. Evolution of Intracellular Ca2+ Waves From About 10,000 RyR Clusters: Towards Solving a Computationally Daunting Task
    P. Li, W. Wei, X. Cai, C. Soeller, M. Cannell and A. V. Holden
    in Proceedings of Fifth International Conference on Functional Imaging and Modeling of the Heart, 2009
  31. Effect of Tonsilar Position on Cerebrospinal Fluid Flow in the Spinal Subarachnoid Space Studied With Computational Fluid Dynamics
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    in Proceedings of the ASNR 47th annual meeting, May 16-21, Vancouver, BC, Canada, 2009
  32. Mathematical Based Imaging of Regional Ischemia
    O. M. Lysaker, B. F. Nielsen, P. Grøttum, K. H. Haugaa, J. G. Fjeld and A. Abildgaard
    in World Congress on Medical Physics and Biomedical Engineering, 2009
  33. Subject Specific Finite Element Analysis of Callus Distraction – a Preliminary Study
    S. H. Pettersen, A. Aamodt, O. A. Foss and B. H. Skallerud
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
  34. Using LES to Model Turbulent Particle Transport in Human Lungs
    H. Radhakrishnan and S. C. Kassinos
    in Proceedings of the 6th International Symposium on Turbulence and Shear Flow Phenomena (TSFP6), 2009
  35. CFD Modeling of Turbulent Flow and Particle Deposition in Human Lungs
    H. Radhakrishnan and S. C. Kassinos
    in Conference Proceedings of the International Conference of IEEE Engineering in Medicine and Biology Society (2009), 2009
  36. A Two Dimensional Model of Coupled Electromechanics in Cardiac Tissue
    B. M. Rocha, B. Lino, R. W. dos Santos, E. M. Toledo, L. P. S. Barra and J. Sundnes
    in Proceedings of the World Congress on Medical Physics and Biomedical Engineering, 2009
  37. Simulating Heart Valve Dynamics in FEniCS
    K. Selim and A. Logg
    in MekIT'09, 2009
  38. Proper Orthogonal Decomposition of Velocity and Scalar Fields in Shear Generated Turbulence
    M. Tutkun, B. A. P. Reif, P. B. V. Johansson and J. Werne
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
  39. An Adaptive Sub-Sampling Method for In-Memory Compression of Scientific Data
    D. Unat, T. H. III and S. Baden
    in Data Compression Conference, 2009
  40. Implementing a k - ε Turbulence Model in the FEniCS Finite Element Programming Environment
    K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
    in MekIT'09, 2009
  41. Numerical Modeling of Aerosol Dispersion Inside a Rotating Aerosol Chamber
    M. Vartdal and B. A. P. Reif
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
  42. Large Eddy Simulations of the Evaporation From a Liquid Pool Beneath a Turbulent Air Flow
    T. Vik and B. A. P. Reif
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
  43. CFD Simulations of the Evaporation From a Liquid Pool in a Turbulent Flow
    T. Vik, B. A. P. Reif and M. Endregård
    in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
  44. Using Cython to Speed Up Numerical Python Programs
    I. Wilbers, H. P. Langtangen and Å. Ødegård
    in Proceedings of MekIT'09, 2009
  45. Unsteady RANS Modelling of Pollutant Dispersion in an Idealized Urban Area
    E. M. M. Wingstedt and B. A. P. Reif
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
  46. Numerical Analysis of a Dual-Sediment Transport Model Applied to Lake Okeechobee, Florida
    S. R. Clark, W. Wei and X. Cai
    in Proceedings of the 2010 Ninth International Symposium on Parallel and Distributed Computing, 2010
  47. Control of Ca Release Synchrony by Action Potential Configuration in Murine Cardiomyocytes
    J. E. Hake, G. F. Jølle, H. K. Mørk, I. Sjaastad, O. M. Sejersted, W. E. Louch and G. T. Lines
    in Biophysical Journal, 2010
  48. A Note on Discontinuous Rate Functions for the Gate Variables in Mathematical Models of Cardiac Cells
    M. Hanslien, N. Holden and J. Sundnes
    in Proceedings of the International Conference on Computational Science, ICCS, 2010
  49. FSI Simulation of the Mitral Valve With Contact and Active Anisotropic Material Models
    L. R. Hellevik, M. Astorino, P. Moireau, V. E. Prot, B. H. Skallerud and J. F. Gerbeau
    in 6th World Congress of Biomechanics, 2010
  50. Transition to Turbulence in the Wake of a Confined Circular Cylinder
    N. Kanaris, X. Albets-Chico and S. C. Kassinos
    in Proceedings of the 8th International ERCOFTAC Symposium on Engineering Turbulence Models and Measurements (ETMM8), 2010
  51. A Reference Solution for the Lorenz System on [0, 1000]
    B. Kehlet and A. Logg
    in AIP Conference Proceedings, 2010
  52. Initial Study on Material Modeling of Umbilical Veins in Fetal Sheep
    P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
    in 6th World Congress of Biomechanics, 2010
  53. Source-to-Source Optimization of CUDA C for GPU-Accelerated Cardiac Cell Modeling
    F. V. Lionetti, A. D. McCulloch and S. Baden
    in The Sixteenth International Conference on Parallel Computing, EuroPar '10, Ischia, Italy, Aug 31-Sept 3, 2010, 2010
  54. Building Flexible User Interfaces for Solving PDEs
    A. Logg and G. N. Wells
    in AIP Conference Proceedings, 2010
  55. The Spectral Element Method Used to Assess the Quality of a Global C¹ Map.
    A. E. Løvgren, Y. Maday and E. M. Rønquist
    in Spectral and High Order Methods for Partial Differential Equations. Selected papers from the ICOSAHOM '09 conference, June 22-26, Trondheim, Norway, 2010
  56. The Reduced Basis Element Method: Offline-Online Decomposition in the Nonconforming, Nonaffine Case.
    A. E. Løvgren, Y. Maday and E. M. Rønquist
    in Spectral and High Order Methods for Partial Differential Equations. Selected papers from the ICOSAHOM '09 conference, June 22-26, Trondheim, Norway, 2010
  57. Towards an Implementation of Nitsche's Method on Overlapping Meshes in 3D
    A. Massing, M. Larson and A. Logg
    in AIP Conference Proceedings, 2010
  58. The Development of a New Computational Model for the Electromechanics of the Human Myocyte
    B. L. d. Oliveira, J. Sundnes and R. W. dos Santos
    in Proceedings of the 32nd International Conference of the IEEE EMBS, 2010
  59. Numerical Modeling of Turbulent Airflow and Particle Deposition in a Bifurcating Airway Model
    H. Radhakrishnan and S. C. Kassinos
    in World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, 2010
  60. CFD Analysis of Turbulent Flow and Particle Deposition in a Symmetrically Bifurcating Human Airway Model
    H. Radhakrishnan and S. C. Kassinos
    in 6th World Congress on Biomechanics, 2010
  61. Computation of Turbulent Flow for Some Benchmark Cases Using the ASBM RANS Model
    H. Radhakrishnan and S. C. Kassinos
    in Proceedings of the 8th International ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2010
  62. Exploring Automated Adaptivity and Error Control
    M. E. Rognes and A. Logg
    in AIP Conference Proceedings, 2010
  63. Ductile Fracture Analysis of Plates and Shells With Embedded Defects
    B. H. Skallerud, B. K. Hauge, E. Berg, K. H. Holthe and E. Olsø
    in 18. European Conference on Fracture, Dresden, 2010
  64. CSF Flow in Chiari I and Syringomyelia - From the Perspective of Fluid Dynamics
    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
    in Proceedings of the XIX Symposium Neuroradiologicum, Bologna, Italy, 2010
  65. Simplified Mathematical Models of Defibrillation
    A. Tveito, G. T. Lines, M. M. Maleckar and O. Skavhaug
    in Conference Abstracts, VPH 2010, 2010
  66. Structure Dimensionality Tensors for the Description of Turbulent Passive Scalar Fields
    X.Albets-Chico, D. G. E. Grigoriadis, V. Akylas and S. C. Kassinos
    in Proceedings of the 8th International ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2010
  67. Post-Processing of Marginally Resolved Spectral Element Data
    C. E. Wasberg
    in Spectral and High Order Methods for Partial Differential Equations, 2011
  68. 3D Heart Modeling With Cellular Automata, Mass-Spring System and CUDA
    R. S. Campos, R. M. Amorim, B. L. d. Oliveira, B. M. Rocha, J. Sundnes, L. P. S. Barra, M. Lobosco and R. W. d. Santos
    in Lecture Notes in Computer Science, 2013
  69. A Stabilized Nitsche Fictitious Domain Formulation for the Three-Field Stokes Problem
    S. Claus, A. Massing and E. Burman
    in Proceedings of the 26th Nordic Seminar on Computational Mechanics, 2013
  70. Uncertainty Quantification of Diffusion in Layered Media by a New Method Based on Polynomial Chaos Expansion
    J. Feinberg and H. P. Langtangen
    in Seventh National Conference on Computational Mechanics MekIT'13, 2013
  71. RoseDist: Generalized Tool for Simulating With Non-Standard Probability Distributions
    J. Feinberg and S. R. Clark
    in MODSIM2013, 20th International Congress on Modelling and Simulation, 2013
  72. Quantifying the Computability of the Lorenz System
    B. Kehlet and A. Logg
    in Proceedings of the VI International Conference on Adaptive Modeling and Simulation (ADMOS 2013), 2013
  73. A Second Order Fast Sweeping Method for the Eikonal Equation Based on Minimization
    M. Kuchta and M. Mortensen
    in The Nordic Seminar on Computational Mechanics, 2013
  74. On the GPU Performance of Cell-Centered Finite Volume Method Over Unstructured Tetrahedral Meshes
    J. Langguth, N. Wu, J. Chai and X. Cai
    in Proceedings of the 3rd Workshop on Irregular Applications: Architectures and Algorithms, 2013
  75. Component Mode Synthesis for Laminar Viscous Incompressible Fluid Flow
    M. Larson and F. Bengzon
    in Recent Advances in Scientific Computing and Applications, 2013
  76. Computing Ischemic Regions in the Heart: on the Use of Internal Electrodes
    O. M. Lysaker, B. F. Nielsen and S. Wall
    in Computing in Cardiology Conference (CinC), 2013
  77. Preliminary Study of the Impact of Spinal Cord Nerve Roots and Denticulate Ligaments on Drug Movement in the Cervical Spinal Subarachnoid Space
    M. Mortensen, K.-A. Mardal, B. Martin and S. Pahlavian
    in The Nordic Seminar on Computational Mechanics, 2013
  78. Effect of Oscillatory Cerebrospinal Fluid Pressure on Fluid Movement in the Spinal Cord
    K.-H. Støverud, K.-A. Mardal and H. P. Langtangen
    in Seven'th National Conference on Computational Mechanics (MekIT'13), 2013
  79. Performance of Sediment Transport Simulations on NVIDIA's Kepler Architecture
    H. Su, N. Wu, M. Wen, C. Zhang and X. Cai
    in Proceedings of the International Conference on Computational Science, ICCS 2013, 2013
  80. On the GPU Performance of 3D Stencil Computations Implemented in OpenCL
    H. Su, N. Wu, M. Wen, C. Zhang and X. Cai
    in Proceedings of International Supercomputing Conference, ISC 2013, 2013
  81. A Quasi-Analytical Method for Calculating Junction Pressure Losses in 1D Vascular Network Models: Validation With High-Resolution CFD
    K. Valen-Sendstad and J. P. Mynard
    in 3rd International Conference on Computational and Mathematical Biomedical Engineering - CMBE2013, 2013
  82. Impact of CFD Solution Strategy on Predicted Aneurysm Hemodynamics: Good News and Bad News
    K. Valen-Sendstad and D. A. Steinman
    in Proceedings of 8th international symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, 2013
  83. A Novel Framework for Classifying Wall Shear Stress Phenotypes in Arterial Disturbed Blood Flow
    Y. Shimogonya, K. Valen-Sendstad and D. A. Steinman
    in World Congress of Biomechanics Proceedings, 2014
  84. Automated Transformation of GPU-Specific OpenCL Kernels Targeting Performance Portability on Multi-Core/Many-Core CPUs
    D. Huang, M. Wen, C. Xun, D. Chen, X. Cai, Y. Qiao, N. Wu and C. Zhang
    in Proceednigs of Euro-Par 2014, 2014
  85. Utilizing Multiple Xeon Phi Coprocessors on One Compute Node
    X. Dong, J. Chai, J. Yang, M. Wen, N. Wu, X. Cai, C. Zhang and Z. Chen
    in Proceedings of ICA3PP 2014, 2014
  86. Effective Multi-GPU Communication Using Multiple CUDA Streams and Threads
    M. Sourouri, T. Gillberg, S. Baden and X. Cai
    in 20th International Conference on Parallel and Distributed Systems (ICPADS 2014), 2014
  87. Heterogeneous CPU-GPU Computing for the Finite Volume Method on 3D Unstructured Meshes
    J. Langguth and X. Cai
    in 20th International Conference on Parallel and Distributed Systems (ICPADS 2014), 2014
  88. Automated and Incremental Conformance Checking to Support Interactive Product Configuration
    H. Lu, T. Yue, S. Ali, K. Nie and L. Zhang
    in The 25th IEEE International Symposium on Software Reliability Engineering (ISSRE), 2014

Proceedings without referee

  1. Trends in Computational Mechanics Software
    H. P. Langtangen and A. Logg
    in 21st Nordic Seminar on Computational Mechanics, 21st Nordic Seminar on Computational Mechanics, 2008
  2. An Overview of the FEniCS Project
    A. Logg
    in 21st Nordic Seminar on Computational Mechanics, 2008
  3. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
    A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
    in 21st Nordic Seminar on Computational Mechanics, 2008
  4. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
    O. C. Myklebust, S. Hentschel and K.-A. Mardal
    in 21st Nordic Seminar on Computational Mechanics, 2008
  5. Collaborative Computational Frameworks and the Growth Problem
    H. Narayanan, K. Garikipati and A. Logg
    in The mathematics of growth and remodelling of soft biological tissues, 2008
  6. Automated Computational Modelling for Solid Mechanics
    K. B. Oelgaard, G. N. Wells and A. Logg
    in IUTAM Symposium on Theoretical, Modelling and Computational Aspects of Inelastic Media, 2008
  7. Mitral Valve Finite Element Analysis Using Human Uniaxial Tensile Data
    V. E. Prot, B. H. Skallerud and G. A. Holzapfel
    in 8th world congress on computational mechanics, 2008
  8. Solid Versus Membrane Finite Elements in Analysis of the Mitral Valve: a Case Study
    V. E. Prot and B. H. Skallerud
    in 6th International Conference on Computation of Shell & Spatial Structures, Ithaca, N.Y., 2008
  9. On the Biomechanical Analysis of Bruises
    B. H. Skallerud, A. Winnem, L. L. Randeberg and L. O. Svaasand
    in 21st Nordic Seminar on Computational Mechanics, 2008
  10. Two-Point Cross-Spectral and POD Analysis of High Reynold Number Zero Pressure Gradient Turbulent Boundary Layer
    M. Tutkun, W. K. George, J. M. Foucaut, S. Coudert, M. Stanislas and J. Delville
    in Bulletin of American Physical Society, 61th Annual meeting of the APS Division of fluid dynamics, 2008
  11. Measuring Spectra With Burst-Mode LDA
    C. Velte, W. K. George, M. Tutkun and B. Frohnapfel
    in Bulletin of the American Physical Society, 61th Annual meeting of the APS Division of fluid dynamics, 2008
  12. Rapid Pliocene Rollback of the Tonga-Kermadec Trench Caused by Differential Kinematic Plate Motion
    S. R. Clark
    in Geophysical Research Abstracts, 6th EGU General Assembly, Vienna 2009, 2009
  13. GPU Accelerated Solvers for ODEs Describing Cardiac Membrane Equations
    F. V. Lionetti, A. D. McCulloch and S. Baden
    in Proceeding of the GPU technology Conference, 2009
  14. GPU Accelerated Electrophysiology Simulations
    F. V. Lionetti, A. D. McCulloch and S. Baden
    in Proceedings of the 2009 ACM/IEEE Conference on supercomputing (SC 2009), 2009
  15. Uncertainty Analysis of the Mechanics of the Heart
    H. Osnes, S. R. Clark and J. Sundnes
    in Proceedings of the Twenty Second Nordic Seminar on Computational Mechanics, 2009
  16. Python for Scientific Computing at SIAM CSE 2009
    F. Perez, H. P. Langtangen and R. LeVeque
    in SIAM News, 2009
  17. Simulation and Visualization of the Early Visual System Using PyNEST and ConnPlotter
    H. E. Plesser, K. Austvoll and E. Nordlie
    in Scandinavian Journal of Vision Science, 2009
  18. Specification and Generation of Structured Neuronal Network Models With the NEST Topology Module
    H. E. Plesser and K. Austvoll
    in Eighteenth Annual Computational Neuroscience Meeting, 2009
  19. Concise and Informative Diagrams of Neuronal Network Models: a Proposal
    H. E. Plesser, E. Nordlie and M.-O. Gewaltig
    in Neuroscience Meeting Planner, 2009
  20. Alternative Elasticity Modeling Approaches for Mitral Valve Analysis: Consequences for Stress and Deformation Prediction
    B. H. Skallerud and V. E. Prot
    in Proceeding of the 22nd Nordic Seminar on Computational Mechanics, 2009
  21. Tissue Fiber Families in the Mitral Valve - Constitutive Modelling Numerical Analysis and Potential Clinical Application
    B. H. Skallerud
    in Proceeding of the 22nd Nordic Seminar on Computational Mechanics, 2009
  22. Biomedical and Bioinformatics Challenges to Computer Science
    M. Cannataro, R. W. dos Santos and J. Sundnes
    in Proceedings of the International Conference on Computational Science, ICCS,, 2010
  23. Geodynamic Models Assist in Determining the South Loyalty Basin's Slab Location and Its Implications for Regional Topography
    S. R. Clark
    in Geophysical Research Abstracts, 2010
  24. Experimental and Computational Investigation of Viscoelasticity of Native and Engineered Ligament and Tendon
    J. Ma, H. Narayanan, K. Garikipati, K. Grosh and E. M. Arruda
    in Cellular, Molecular and Tissue Mechanics, 2010
  25. Modeling Pulsatile Flow in an Aneurystic Carotid Artery
    H. Radhakrishnan and S. C. Kassinos
    in Proceedings of the 8th Euromech Fluid Mechanics Conference, 2010
  26. Automatic Calibration of Depositional Models
    A. Schroll
    in Book of Abstracts, Scientific Computing Seminar, 2010
  27. On High-Resolution Shock Simulations - Breaking the Course of Godunov's Theorem
    A. Schroll
    in Book of Abstracts, Cut Cell Methods for Atmosphere and Ocean Modeling, 2010
  28. A Strong Coupling FSI Scheme for Simulating BMHV Dynamics
    S. Annerel, J. Degroote, T. Claessens, S. Dahl, B. Skallerud, L. R. Hellevik, P. V. Ransbeeck, P. Segers, P. Verdonck and J. Vierendeels
    in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
  29. Modeling the Dispersion and Transport of Aerosols Emitted From Industrial Facility During 2005 and 2008 Outbreaks of Legionnaire's Disease in Norway
    H. E. Fossum, M. Tutkun, B. A. P. Reif and Ø. Andreassen
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
  30. Flow Patterns and Aerosol Dispersion Inside an Aerosol Test Chamber
    H. E. Fossum, B. A. P. Reif and G. Skogan
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
  31. Verification of Markovian Properties of Turbulent Boundary Layer at High Reynolds Number
    M. Fredbo and M. Tutkun
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
  32. A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding
    T. Gillberg
    in MODSIM2011, 19th International Congress on Modelling and Simulation, 2011
  33. A Biomechanical Model for Human Umbilical Veins and Wharton's Jelly
    P. R. Leinan, P. Victorien, C. N. v. d. Broek, T. Kiserud, B. Skallerud, L. R. Hellevik and F. N. v. d. Vosse
    in 8th International Conference on Computational Fluid Dynamics in the Oil & Gas, Metallurgical and Process Industries, 2011
  34. Cerebrospinal Fluid Flow Characteristics at Double Heart Rate
    S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
    in Neuroradiology, 53 (Suppl. 1), S33, 35th European Soc of Neuroradiology ann. meeting, Antwerpen, Belgium, 2011
  35. Cyclic Cerebrospinal Fluid Flow (I): Towards the Understanding of Cerebrospinal Fluid Flow Dynamics in Chiari I Malformation
    S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland, H. P. Langtangen and K.-H. Støverud
    in ASNR 49th Annual Meeting & the Foundation of the ASNR Symposium, June 4 - 9, 2011., 2011
  36. CBC.RANS - a New Flexible, Programmable Software Framework for Computational Fluid Dynamics
    M. Mortensen, H. P. Langtangen and J. Myhre
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
  37. The Effect of Varying Cross-Sectional Areas on Cerebrospinal Fluid Flow and Pressure in the Cervical Spine
    K.-H. Støverud, K.-A. Mardal, H. P. Langtangen and V. Haughton
    in MekIT'11, 2011
  38. Mint: Realizing CUDA Performance in 3D Stencil Methods With Annotated C
    D. Unat, X. Cai and S. Baden
    in Proceedings of the 25th International Conference on Supercomputing (ICS'11), 2011
  39. Auto-Optimization of a Feature Selection Algorithm
    D. Unat, H. S. Kim, J. P. Schulze and S. Baden
    in Proceedings of the 4th Workshop on Emerging Applications and Many-core Architecture, 2011
  40. On the Complexity of Stationary Flow in Patient–Specific Aneurysms
    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
    in MekIT'11 Sixth national conference on Computational Mechanics, 2011
  41. Direct Numerical Simulation of Transitional Flow in a Patient-Specific MCA Aneurysm
    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
    in Proceedings of the ASME 2011 Summer Bioengineering Conference, 2011
  42. Investigations of Transistional Flows Using Image Based Hemodynamics
    K. Valen-Sendstad, M. Mortensen, K.-A. Mardal, B. A. P. Reif and H. P. Langtangen
    in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
  43. Large Eddy Simulations of the Release of Liquified Chlorine From a Pressurized Tank Into the Atmosphere
    T. Vik and B. A. P. Reif
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
  44. FEniCS Framework in Geoscientific Applications
    L. Vynnytska and S. R. Clark
    in MODSIM 2011, 2011
  45. An OpenMP-Enabled Parallel Simulator for Particle Transport in Fluid Flows
    W. Wei, O. Al-Khayat and X. Cai
    in Proceedings of the 2011 International Conference on Computational Science, 2011
  46. A Newton Method for Fluid-Structure Interaction Using Full Jacobians Based on Automatic Form Differentiation
    G. Balaban, A. Logg and M. E. Rognes
    in Proceedings of ECCOMAS 2012, 2012
  47. A Parallel 3D Front Propagation Algorithm for Simulation of Geological Folding on GPUs
    T. Gillberg, Ø. Hjelle and A. M. Bruaset
    in EAGE 74th Conference & Exhibition, Copenhagen, 2012
  48. A New Parallel 3D Front Propagation Algorithm for Fast Simulation of Geological Folds
    T. Gillberg, M. Sourouri and X. Cai
    in Proceedings of the International Conference on Computational Science, ICCS 2012, 2012
  49. Model Reduction for Thermoelasticity
    M. Larson, H. Jakobsson and H. Jakobsson
    in Proceedings of the 8th international conference on engineering computation, 2012
  50. Component Modal Synthesis for Laminar Viscous Incompressible Fluid Flow
    M. Larson and F. Bengzon
    in Proceedings of the 8th International Conference on Scientific Computing and Applications, 2012
  51. On the Use of the Bidomain Model for Computing the Position and Size of Ischemic Regions; a Validation Study
    O. M. Lysaker, B. F. Nielsen and P. Grøttum
    in Computing in Cardiology, 2012
  52. Modeling and Predicting Performance of High Performance Computing Applications on Hardware Accelerators
    M. Mitesh, L. Carrington, D. Unat, A. Snavely, S. Baden and S. Poole
    in Proceedings of IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012
  53. Flexible Software Tools for Computational Turbulence
    M. Mortensen and H. P. Langtangen
    in Proceedings of the 25th Nordic Seminar on Computational Mechanics (NSCM-25), 2012
  54. Effects of an Orthogonal Contractile System in the Anterior Leaflet on the Systolic Mitral Valve Response: a Nonlinear Finite Element Study
    V. E. Prot and B. H. Skallerud
    in 10th Internation Symposium, Computational Methods in Biomechanics and Biomedical Engineering, 2012
  55. Automatically Generated Solvers for Variational Formulations of Time-Dependent Partial Differential Equations
    M. E. Rognes, B. Kehlet and A. Logg
    in Proceedings of ECCOMAS 2012, 2012
  56. Is CFD Misleading Us About the Nature of Wall Shear Stresses in Cerebral Aneurysms?
    K. Valen-Sendstad and D. A. Steinman
    in The 7th International Symposium on Biomechanics in Vascular Biology & Cardiovascular Disease, Atlanta, Georgia, USA, 2012
  57. Using 1000+ GPUs and 10000+ CPUs for Sedimentary Basin Simulations
    M. Wen, H. Su, W. Wei, N. Wu, X. Cai and C. Zhang
    in Proceedings of IEEE Cluster 2012, 2012
  58. Least Squares Fitting of a Cardiac Hyperelasticity Model Using an Automatically Derived Adjoint Equation
    G. Balaban, J. Sundnes, M. S. Alnaes and M. E. Rognes
    in Proceedings of NSCM-27: the 27th Nordic Seminar on Computational Mechanics, 2014
  59. A Markov-State Model for the Regulation of the Sarcoplasmic Reticulum Ca2+ ATPase by Phospholamban
    P. M. Kekenes-Huskey, A. G. Edwards, J. E. Hake, A. P. Michailova, A. J. McCammon and A. D. McCulloch
    in Annual meeting in Biophysical society, 2014

Technical Reports

  1. Mohr-Coulomb Stress in the Code for Deformation and Heat Flow in Sedimentary Basins
    H. Osnes
    Simula Research Laboratory, 2007
  2. Finding the Set of Measurements Necessary to Reveal the State of a Static System
    R. Lorentzen
    Simula Research Laboratory, 2011
  3. Parallel Solvers for Static Hamilton-Jacobi Equations in Three Dimensions
    T. Gillberg, A. M. Bruaset, M. Sourouri and Ø. Hjelle
    Simula Research Laboratory, 2013

Manuals

  1. UFC Specification and User Manual 1.0
    M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
    2007
  2. DOLFIN User Manual
    A. Logg and G. N. Wells
    2007
  3. FFC User Manual
    A. Logg
    2007
  4. UFL Specification and User Manual
    M. S. Alnæs and A. Logg
    2009
  5. Combining FEniCS With Your Favorite Software in C, C++, Fortran, Or MATLAB
    K.-A. Mardal and H. P. Langtangen
    2013

Theses

  1. Modelling and Numerical Analysis of the Porcine and Human Mitral Apparatus
    V. E. Prot
    Ph.D. Thesis, Department of Structural Engineering, Norwegian University of Science and Technology, 2008
  2. Structure of Zero Pressure Gradient High Reynolds Number Turbulent Boundary Layers
    M. Tutkun
    Ph.D. Thesis, Chalmers University of Technology, 2008
  3. A Compiler Framework for Automatic Linearization and Efficient Discretization of Nonlinear Partial Differential Equations
    M. S. Alnæs
    Ph.D. Thesis, University of Oslo, 2009
  4. Calcium Dynamics in Signaling Micro Domains of Cardiac Myocytes - a Modelling Study
    J. E. Hake
    Ph.D. Thesis, University of Oslo, 2009
  5. Subject Specific Finite Element Analysis of Bone for Evaluation of the Healing of a Leg Lengthening and Evaluation of Femoral Stem Design
    S. H. Pettersen
    Ph.D. Thesis, Norwegian University of Science and Technology, 2009
  6. Mixed Finite Element Methods With Applications to Viscoelasticity and Gels
    M. E. Rognes
    Ph.D. Thesis, University of Oslo, 2009
  7. Contributions to Simplifying Bidomain Simulations
    T. S. Ruud
    Ph.D. Thesis, Department of Informatics, University of Oslo, 2009
  8. Mesoscale Modeling of Particle Flow
    O. Al-Khayat
    Ph.D. Thesis, Department of Informatics, University of Oslo, 2010
  9. Numerical Methods for Basin-Scale Poroelastic Modelling
    J. B. Haga
    Ph.D. Thesis, University of Oslo, 2011
  10. Adaptive Finite Element Methods for Fluid–Structure Interaction and Incompressible Flow
    K. Selim
    Ph.D. Thesis, University of Oslo, 2011
  11. Computational Cerebral Hemodynamics
    K. Valen-Sendstad
    Ph.D. Thesis, Faculty of Mathematics and Natural Sciences, University of Oslo, 2011
  12. Numerical Simulations of Blood Flow in the Left Side of the Heart
    S. K. Dahl
    Ph.D. Thesis, Norwegian University of Science and Technology, 2012
  13. Biomechanical Modeling of Fetal Veins. the Umbilical Vein and Ductus Venosus Bifurcation
    P. R. Leinan
    Ph.D. Thesis, Norwegian University of Science and Technology, 2012
  14. Analysis and Implementation of Finite Element Methods on Overlapping and Fictitious Domains
    A. Massing
    Ph.D. Thesis, University of Oslo, 2012
  15. Domain-Specific Translator and Optimizer for Massive On-Chip Parallelism
    D. Unat
    Ph.D. Thesis, University of California, San Diego, 2012
  16. Effective Use of Multicore-Based Parallel Computers for Scientific Computing
    W. Wei
    Ph.D. Thesis, University of Oslo, 2012
  17. Fast and Accurate Front Propagation for Simulation of Geological Folds
    T. Gillberg
    Ph.D. Thesis, Faculty of Mathematics and Natural Sciences, University of Oslo, 2013
  18. Relation Between the Chiari I Malformation and Syringomyelia From a Mechanical Perspective
    K.-H. Støverud
    Ph.D. Thesis, University of Oslo, 2014
  19. Computational models of Cardiac Electromechanics
    B. L. d. Oliveira
    Ph.D. Thesis, University of Oslo, 2014
  20. Uncertainty Quantification and Sensitivity Analysis for Cardiovascular Models
    Vinzenz Gregor Eck
    Ph.D. Thesis, Norwegian University of Science and Technology, 2016

Talks

  1. Lattice Boltzmann Method and Turbidity Flow Modeling
    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
  2. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
    M. S. Alnæs, K.-A. Mardal and J. Sundnes
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
  3. Computing the Mechanics of the Heart
    M. S. Alnæs
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
  4. Overcoming Obstacles With Graph Based Programming Models
    S. Baden
    CBC Workshop on Biomedical Computing, Simula, 2007
  5. A Data Centric View of Scientific Computing
    S. Baden
    CBC Workshop on Biomedical Computing, Simula, 2007
  6. A Sustainable Software Ecosystem
    S. Baden
    CBC Workshop on High-Performance and Parallel Computing, October 24, 2007
  7. Benchmark of a Tsunami Run-Up Code
    R. E. Bredesen, G. K. Pedersen and H. P. Langtangen
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
  8. On a Future Software Platform for Demanding Multi-Scale and Multi-Physics Problems
    X. Cai and H. P. Langtangen
    SIAM CSE07 Conference, Costa Mesa, February 19-23, 2007
  9. Simulating Tsunami Propagation on Parallel Computers Using a Hybrid Software Framework
    X. Cai
    Guest lecture, University of Stuttgart, March 12, 2007
  10. On Building Parallel Algorithms and Software for Hydraulic Tomography
    X. Cai
    SIAM GS2007 Conference, Santa Fe, New Mexico, March 19-22, 2007
  11. Building Hybrid Parallel PDE Software by Domain Decomposition and Object-Oriented Programming
    X. Cai
    ICCM 2007 Conference, Hiroshima, Japan, April 4-6, 2007
  12. Making Parallel PDE Software by Object-Oriented Programming
    X. Cai
    Guest lecture, Hohai University, China, May 17, 2007
  13. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
    S. K. Dahl
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
  14. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
    S. K. Dahl
    CBC seminar on Biomechanics, Trondheim, November 15, 2007
  15. Optimal Coupling in a Multiscale Model
    H. Enger, J. Feder, A. Malthe-Sørenssen and H. P. Langtangen
    Kongsberg Seminar on geology, Kongsberg, Norway, 2007
  16. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow, and Heat Transport in Porous Geological Formations
    J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
  17. Stochastic Binding of Ca2+ Ions in the Dyadic Cleft Continuous Vs Random Walk Description of Diffusion
    J. E. Hake and G. T. Lines
    ICIAM 07: 6th International Congress on Industrial and Applied Mathematics, ZÜrich, July 16-20, 2007
  18. Stochastic Binding of Ca2+ Ions in the Dyadic Cleft Continuous Vs Random Walk Description of Diffusion
    J. E. Hake and G. T. Lines
    5th Annual CHFR Symposium, 2007
  19. Subcellular Calsium Handling
    J. E. Hake
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
  20. Stable Numerical Methods for Cell Models Used in Simulations of Ventricular Defibrillation
    M. Hanslien
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
  21. A Pseudospectral Fourier Method Applied to an Incompressible Two-Fluid Model
    H. Holmås, D. Clamond and H. P. Langtangen
    International Conference on Multiphase Flow (ICMF), Leipzig, Germany, 2007
  22. Computational Modeling of Huge Tsunamis From Asteroid Impacts
    H. P. Langtangen
    International conference on Computational Science (ICCS'07), Beijing, China, 2007
  23. Multiscale Modeling of Turbulent Flow
    M. Larson
    CBC Workshop on Biomedical Computing, Simula, 2007
  24. Adaptivity and Error Estimation for Multiphysics Problems
    M. Larson
    CBC Workshop on Biomedical Computing, Simula, 2007
  25. Simulations and Experiments With the BSCC Mechanical Heart Valve Prosthesis
    P. R. Leinan
    CBC Workshop on Biomechanics, Trondheim, November 15, 2007
  26. Cardiac Computing at Simula
    G. T. Lines
    CBC Workshop on Biomedical Computing, Simula, 2007
  27. Overview of the Cardiac Computations Project
    G. T. Lines
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
  28. Requirements on PDE Solver Componentsfor Multiphysics Simulation
    M. Ljungberg
    Minisymposium talk at the SIAM Conference on Computational Science and Engineering, Miami, USA, 2007
  29. Efficient Representation of Computational Meshes
    A. Logg
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
  30. Activities at Simula: FEniCS and the Center for Biomedical Computing
    A. Logg
    Computational and Applied Mathematics Seminar, Chalmers University of Technology, Göteborg, September 26, 2007
  31. Automated Solution of Differential Equations
    A. Logg
    ICIAM 07: 6th International Congress on Industrial and Applied Mathematics, ZÜrich, July 16-20, 2007
  32. Finite Element Code Generation: Simplicity, Generality, Efficiency
    A. Logg
    Software Issues in Computational Science and Engineering (SCSE), Uppsala, August 11, 2007
  33. PDE Methods for Identifying Ischemic Heart Disease
    O. M. Lysaker and B. F. Nielsen
    6th International Congress on Industrial and Applied Mathematics, 2007
  34. Reduced Basis Modeling of Complex Flow Systems
    A. E. Løvgren, E. M. Rønquist and Y. Maday
    Modelling and Scientific Computing group at EPFL, Switzerland, November, 2007
  35. Simulation of Atrial Arrhytmias
    M. MacLachlan
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
  36. Finite Elements With Symbolic Computations and Code Generation
    K.-A. Mardal and M. S. Alnæs
    Software Issues in Computational Science and Engineering (SCSE), Uppsala, August 11, 2007
  37. Computation of Hemodynamics in the Circle of Willis
    K.-A. Mardal
    Modelling and Computation of Biomedical Processess Workshop, Simula Oslo, June 7-14, 2007
  38. Multi-Scale Modeling of Cardiac Electromechanical Interactions
    A. D. McCulloch
    CBC Workshop on Biomedical Computing, Simula, 2007
  39. Can Inverse Problems Tell You the Condition of Your Heart?
    B. F. Nielsen, O. M. Lysaker and M. Larson
    ICIAM 07: 6th International Congress on Industrial and Applied Mathematics, ZÜrich, July 16-20, 2007
  40. Inverse Solutions for Assesing Myocardial Ischemia
    B. F. Nielsen
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
  41. The G3 F2PY for Connection Python and FORTRAN 90 Programs
    P. Peterson
    Software Issues in Computational Science and Engineering (SCSE), Uppsala, August 11, 2007
  42. Solid Finite Element Analysis of the Mitral Valve
    V. E. Prot
    CBC Workshop on Biomechanics, Trondheim, November 15, 2007
  43. Effects on Connective Tissue Pathologies on Mitral Valve Response
    V. E. Prot, B. H. Skallerud and G. A. Holzapfel
    Conference on Modeling of heterogeneous materials with application in construction and biomedical engineering, Prague, 2007
  44. Multiscale Modeling of the Acoustic Properties Og Lung Parenchyma
    M. Siklosi
    CBC Workshop on Biomedical Computing, Simula, 2007
  45. Modeling of the Mitral Valve in the Heart
    B. H. Skallerud
    CBC Workshop on Biomedical Computing, Simula, 2007
  46. Using Mathematical Models to Test Physiological Hypotheses
    J. Sundnes
    Annual meeting of the Scandinavian Physiological Society, 2007
  47. Computational Techniques for Heart Muscle Mechanics
    J. Sundnes
    ICIAM 07: 6th International Congress on Industrial and Applied Mathematics, ZÜrich, July 16-20, 2007
  48. Software Components for Biomedical Flows
    J. Sundnes
    National seminar on medical technology, NFA (Norsk forening for automatisering), 2007
  49. A Finite Element Model of Cardiac Electrophysiology and Mechanics
    J. Sundnes, M. S. Alnæs and K.-A. Mardal
    VII International conference on computational plasticity, 2007
  50. Challenges With Distributing PyCC Environment
    Å. Ødegård
    CBC Workshop on Biomedical Computing, Simula, 2007
  51. Particle-Based Methods in the Modelling of Turbidity Currents and Turbidites
    O. Al-Khayat, T. M. Løseth, A. M. Bruaset and H. P. Langtangen
    33rd International Geological Congress, Oslo, 2008
  52. Numerical Modeling of Turbidity Flow With the Lattice Boltzmann Method
    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
    Computational Geoscience workshop, 2008
  53. A Coupled Lattice Boltzmann Model for a Turbulent Sand-Laden Fluid Flow
    O. Al-Khayat, H. P. Langtangen and A. M. Bruaset
    DSFD conference, Brazil, 2008
  54. SFC - the SyFi Form Compiler
    M. S. Alnæs and K.-A. Mardal
    International FEniCS'08 Workshop, March 5-7, Baton Rouge, 2008
  55. Surface and Embedded Crack in the Offshore Pipelines Subjected to Plastic Strains
    E. Berg, B. H. Skallerud and K. H. Holthe
    6th international Conference on Computation of Shell and Spatial Structures, 2008
  56. Parallel Computing; Why & How?
    X. Cai
    Winter School on Parallel Computing, January 20-25, Geilo, Norway, 2008
  57. High-Performance Computing on Distributed-Memory Architecture
    X. Cai
    Winter School on Parallel Computing, January 20-25, Geilo, Norway, 2008
  58. Simulation of Tsunami Propagation
    X. Cai
    2nd eScience Meeting, January 21-22, Geilo, Norway, 2008
  59. Use of Advanced Computing in Tomographic Surveys
    X. Cai
    PARA 2008, Trondheim, May 13-16, 2008
  60. Resource-Efficient Simulation of Tsunami Wave Propagation on Parallel Computers
    X. Cai
    2nd Internationsal Symposium for Integrated Predictive Simulation System for Earthequake and Tsunami Disaster, Tokyo, October 21-22, 2008
  61. Geodynamics: the Physics and Mathematics of Terrestrial and Extra-Terrestrial Processes
    S. R. Clark
    CBC Annual Meeting, November 5-6, 2008
  62. Time-Dependant Evolution of Subduction Zones
    S. R. Clark
    Invited talk given at Ludwig-Maximilians University (LMU), Munich, Germany., 2008
  63. Simulating and Visualising the Earth As a Dynamic System
    S. R. Clark
    Lecture given to Valler High School Teachers, 2008
  64. Handling Uncertainty in Numerical Models of Sedimentary Deposition: a Stochastic Approach
    S. R. Clark, A. M. Bruaset and T. M. Løseth
    33rd International Geological Congress, Oslo, 2008
  65. Slabs in the Mantle - Dynamic Topography and Mantle Rheology in the South-Western Pacific
    S. R. Clark, M. Gurnis and M. Dietmar
    33rd International Geological Congress, Oslo, 2008
  66. Lithospheric Modelling: Research Directions at Simula
    S. R. Clark
    GeoMath08, workshop, Santa Fe, New Mexico, 2008
  67. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
    S. K. Dahl, L. R. Hellevik and B. H. Skallerud
    8th World Congress on Computational Mechanics (WCCM8)/5th European Congress on Computational Methods in Applied Sciences and Engineeering (ECCOMAS 2008), Venice, Italy, 2008
  68. Parallel Computations and the Finite Element Method
    J. B. Haga
    SINTEF Applied Mathematics group, 2008
  69. Modelling the Mesoscopic Length Scale of EC Coupling: the Diadic Cleft
    J. E. Hake and G. T. Lines
    European Conference on Mathematical and Theoretical Biology, 2008
  70. Imaging the Craniovertebral Juction
    V. Haughton
    35th Annual Course on Computed Tomography and Magnetic Resonance Imaging of the Brain Rush-Presbyterian, Chicago, 2008
  71. The Chiari I Malformation From the Perspective of Hans Chiari
    V. Haughton
    Chiari Conference, Northwest Research and Education Institute, 2008
  72. The Chiari I Malformation From the Perspective of Modern Imaging
    V. Haughton
    Chiari Conference, Northwest Research and Education Institute, 2008
  73. Wave Propagation in the Human Fetal Ductus Venosus-Umbilical Vein Bifurcation
    L. R. Hellevik
    Reproductive Bioengineering, Wenns im Piztal, Austria, 2008
  74. Numerical Python
    H. P. Langtangen, O. Al-Khayat and A. M. Bruaset
    Four day course at the University of Erlangen, 2008
  75. Fluid Structure Interaction Modeling of Pulsations of the Fetal Umbilical Cord
    P. R. Leinan
    8th World Congress on Computational Mechanics, Venice, 2008
  76. Chiari Malformation - the Problem and a Mathematical Approach
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    Vindern Medical Center, Oslo, December 8, 2008
  77. Cerebrospinal Fluid Flow in Normal and Chiari Subjects
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    CBC Workshop on Current Issues and Activities in the Robust Flow Solvers Project, Simula, December 16, 2008
  78. Cerebrospinal Fluid Flow Simulations - Normal Subjects and Patients With Chiari I Malformation
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    CBC Workshop on experimental, analytical and numerical investigations of blood flow, Simula, October 31, 2008
  79. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
    S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
    CBC Workshop on Simulation of Biomedical Flow Problems, Simula, June 25, 2008
  80. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
    S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
    CBC Workshop on High-Performance Computing and Biomedical Flows, Simula, May 19-21, 2008
  81. The FEniCS Project
    A. Logg
    Workshop on Data Structures for Finite Element and Finite Volume Computations, Freie Universität, Berlin, February 29, 2008
  82. A Symbolic Engine for Finite Element Exterior Calculus
    A. Logg
    Automating the development of scientific computing software, Louisiana State University, 2008
  83. Just-in-Time Compilation of Finite Element Variational Forms
    A. Logg
    Finite Element Circus and Rodeo, Louisiana State University, Baton Rogue, March 7, 2008
  84. FSI Development at CBC
    A. Logg
    Workshop on FSI for Biomedical Applications, Trondheim, September 08, 2008
  85. FEniCS Tutorial
    A. Logg
    CBC Annual Meeting, November 5-6, 2008
  86. A Symbolic Engine for Finite Element Exterior Calculus
    A. Logg
    European Finite Element Fair, Chalmers, Göteborg, May 30, 2008
  87. Computer Simulations for Identifying Ischemic Heart Disease; a Validation Study
    O. M. Lysaker, B. F. Nielsen, P. Grøttum, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
    BBG-MedViz seminar at the Department of Mathematics, University of Bergen, 2008
  88. Theoretical and Practical Aspects of the Inverse Problem of Electrocardiography
    O. M. Lysaker, B. F. Nielsen, P. Grøttum, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
    Fourth International Conference on Inverse Problems: Modeling and Simulation, Turkey, 2008
  89. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
    A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
    21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
  90. Scientific Computing at Simula
    K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
    Workshop on Cerebral Aneurysms and Subarachnoidal Hemorrhage, January 24-26, Tromsø, 2008
  91. Two Steps Towards Automating Efficient Solution of Inverse Problems
    K.-A. Mardal, B. F. Nielsen and M. S. Alnæs
    International FEniCS'08 Workshop, March 5-7, Baton Rouge, 2008
  92. Blood Flow Computations at Simula
    K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
    Medical Physics, University of Wisconsin, March 11, 2008
  93. Hemodynamics in the Circle of Willis
    K.-A. Mardal
    Institute for Computational and Applied Mathematics, Muenster, November 18, Germany, 2008
  94. Seminar: Multi-Scale Modeling of the Heart
    A. D. McCulloch
    MURPA eSeminar, Monash University, Melbourne, Australia, 2008
  95. Towards Image-Based Patient-Specific Multi-Scale Modeling of the Failing Heart
    A. D. McCulloch
    2008 SIAM Life Sciences Conference, Session MS35, Montreal, Canada, 2008
  96. Multi-Scale Modeling of Cardiac Electromechanics
    A. D. McCulloch
    Biomechanical Engineering Math Seminar, Worchester Polytechnic Institute, 2008
  97. Physiome Research in the USA
    A. D. McCulloch
    Invited talk at ICT-BIO, The European Commission, Brussels, 2008
  98. Mechanobiology of Normal and Failing Myocardium
    A. D. McCulloch
    The Physiology Department, Oxford University, 2008
  99. Emerging Role for Multi-Scale Modeling in the Biomechanical Device Industry
    A. D. McCulloch
    3rd ASME Frontiers in Biomechanical Devices Conference, Irvine, California, USA, 2008
  100. Systems Biology and Multi-Scale Modeling of the Heart
    A. D. McCulloch
    University of Washington, Department of Bioengineering, 2008
  101. Systems Biology and Multi-Scale Modeling of the Heart
    A. D. McCulloch
    Pacific Biocomputing Symposium, Kona, Hawaii, 2008
  102. Systems Biology and Multi-Scale Modeling of the Heart
    A. D. McCulloch
    University of Illinois, Chicago, Department of Physiology and Biophysics, 2008
  103. Multi-Scale Modeling of Cardiac Mechanoenergetics
    A. D. McCulloch
    Welcome Trust Physiome Workshop on Multi-scale Modeling of the heart, Auckland, New Zealand, 2008
  104. Multi-Scale Modeling of Cardiac Electromechanics
    A. D. McCulloch
    Symposium on Computational Physiology, Experimental Biology 2008, San Diego, 2008
  105. Multi-Scale Modeling and Systems Biology of Cardiac Regulatory Mechanisms
    A. D. McCulloch
    MEI International Symposium "Physiome and Systems Biology for Integrated Life Sciences and Predictive Medicine", San Fransisco, 2008
  106. Multi-Scale Modeling of the Heart
    A. D. McCulloch
    NCRR P41 Directors, National Library of Medicine, NIH, Bethesda, Maryland, USA, 2008
  107. Multi-Scale Modeling of Ventricular Electromechanics
    A. D. McCulloch
    Cardiovascular System Dynamics Society HVIII Conference, St. Louis, USA, 2008
  108. Mechanosensing and Mechanotransduction in the Myocardium
    A. D. McCulloch
    Seminar at the Cardiology Department, Academic Hospital Maastricht, The Netherlands, 2008
  109. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
    O. C. Myklebust, S. Hentschel and K.-A. Mardal
    21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
  110. Toward a Goal-Oriented Error-Controlled Solver for the Incompressible Navier-Stokes Equations
    H. Narayanan
    CBC workshop on Current Issues and Activities in the Robust Flow Solvers Project, Simula, December 16, 2008
  111. On the Use of Computer Simulations for Identifying Ischemic Heart Disease; Theoretical and Practical Aspects
    B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
    Workshop on Mathematics in Medicine/Biology, Centre of Mathematics for Applications, University of Oslo, 2008
  112. Theoretical and Practical Aspects of the Inverse Problem of Electrocardiography
    B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
    Institut fÜr Mathematik und Wissenschaftliches Rechnen, Karl Franzes Universität in Graz, Austria., 2008
  113. The Inverse Problem of Identifying Ischemic Heart Disease
    B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
    Annual meeting of European Cardiac Simulation Group, Bologna, Italy, 2008
  114. Mitral Valve Finite Element Analysis Using Human Uniaxial Tensile Data
    V. E. Prot
    8th World Congress on Computational Mechanics, Venice, 2008
  115. Solid Versus Membrane Finite Elements in Analysis of the Mitral Valve: a Case Study
    V. E. Prot and B. H. Skallerud
    6th International Conference on Computation of Shell & Spatial Structures, 2008
  116. Turbulens - Det Siste Uløste Problemet I Klassisk Fysikk
    B. A. P. Reif
    Popular Mathematics (POPMAT), University of Oslo, 2008
  117. On Computational Mathematical Modeling
    A. Schroll
    The University of Southern Danmark, 2008
  118. Well-Based Calibration of Geological Models
    A. Schroll
    Mathematisches Forschungsinstitut Oberwolfach, 2008
  119. Automatic Calibration of Depositional Models: an Inverse Problems Approach
    A. Schroll
    33rd International Geological Congress, Oslo, 2008
  120. Stochastic Analysis of Turbulence: N-Scale and N-Point Correlations in Homogeneous an Inhomogeneous Turbulent Flows
    R. Stresing, M. Tutkun, S. LÜck and J. Peinke
    Presented at the iTi Conference on Turbulence III, Bertinoro, Italy, 2008
  121. Computational Challenges in Mathematical Models of the Heart
    J. Sundnes
    Norwegian University of Life Sciences, January 30, 2008
  122. The Role of Genome and Regulatory Network Architecture Canalization in the Evolution of Multi-Trait Polymorphism and Sympatric Speciation
    K. ten Tusscher
    Centre for Ecological and Evolutionary Synthesis at the University of Oslo, Department of Biology, 2008
  123. Evolutionary Biology for Non-Biologists
    K. ten Tusscher
    CBC Annual Meeting, November 5-6, 2008
  124. Genome and Gene Regulatory Network Canalization in the Evolution of Polymorhism and Sympatric Speciation
    K. ten Tusscher
    Symposium "Celebrating 30 years of Bioinformatics" at Utrecht University, 2008
  125. Large Scale Structures of High Reynold Number Turbulent Boundary Layers
    M. Tutkun
    Workshop on Wall Bounded Shear Flows: Transistion and Turbulence, Cambridge University, Isaac Newton Institute for Mathematical Science, 2008
  126. Developing Flow Solver Methodology for Patientspecific Simulation of Hemodynamics
    K. Valen-Sendstad, A. Logg and K.-A. Mardal
    Workshop on Finite Element Methods for Fluids and Fluid-Structure Interaction, June 5, 2008
  127. The Unified Form Language
    M. S. Alnæs
    International FEniCS'09 workshop, Simula, June 11-12, 2009
  128. Preconditioning in Inverse Problems
    M. Burger and B. F. Nielsen
    Applied Inverse Problems conference, Vienna, Austria, 2009
  129. Fluid-Structure Interaction Simulation of Mitral Valve Dynamics in a Subject-Specific Geometry During Diastolic Filling
    S. K. Dahl
    MI-Lab seminar; Cardiac imaging and LV mechanics, Trondheim, Norway, November 10, 2009
  130. Fluid Structure Interaction With an User Defined Subroutine
    S. K. Dahl
    Fluent Users Group at SINTEF / NTNU, June 3, 2009
  131. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
    S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  132. Predicting Particle Deposition in the Human Airways With RANS
    H. E. Fossum and B. A. P. Reif
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2009
  133. On the Perfermance of an Algebraic Multigrid Preconditioner for the Pressure Equationwith Highly Discontinuous Media
    J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  134. MRI Research and Techniques for CSF Flow
    V. Haughton
    ASAP's Chiari & Syringomyelia Conference: Quest for Understanding, 2009
  135. CSF Flow in the Chiari I Malformation Evaluated With PC MR and Computation Flow Design
    V. Haughton
    Nordic Society of Neuroradiology Meeting, 2009
  136. Imaging Evaluation of the Chiari I Malformation
    V. Haughton
    Meeting and symposium of the American Syringomyelia Alliance Project, 2009
  137. Experience With Merging Mathematics, Numerical Methods, Physics and Programming From Day 1
    H. P. Langtangen
    Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
  138. Techniques for Achieving High Performance in Numerical Python Codes
    H. P. Langtangen
    Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
  139. Experience With Python in a Major Educational Reform
    H. P. Langtangen
    Minisymposium talk at the SIAM Conference on Computational Science and Engineering, Miami, USA, 2009
  140. Modeling and Simulation
    H. P. Langtangen
    Invited talk at a Tekna Labor Union seminar, 2009
  141. Python As an Important Tool in a Major Science Education Reform
    H. P. Langtangen
    Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
  142. Sex Differences in Intracranial Bifurcation Geometry and Blood Flow Velocity Result in Stronger Hemodynamic Forces Upon the Female Vessel Wall
    H. Lindekleiv and K. Valen-Sendstad
    Nordic Society of Neuroradiology Meeting, 2009
  143. Antiarrhythmic Drug Identifaction
    G. T. Lines, A. Tveito and P. Li
    Bidomain Workshop, Graz, Austria, 2009
  144. Cerebrospinal Fluid Flow Investigations With Modelling and Simulation
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    The Chiari Institute, New York, January 14, 2009
  145. Simulating Normal and Abnormal CSF Flow With Idealized Geometries
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    Seminar on cerebrospinal fluid flow, University of Wisconsin, Madison, January 16, 2009
  146. Tonsilar Herniation - How Is the CSF Flow Influenced?
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    Rikshospitalet University Hospital, Oslo, Norway, June 5, 2009
  147. GPU Accelerated Electrophysiology Simulations.
    F. V. Lionetti, A. D. McCulloch and S. Baden
    GPU Technology conference, San Jose, California, 2009
  148. GPU Accelerated Electrophysiology Simulations
    F. V. Lionetti, A. D. McCulloch and S. Baden
    ACM/IEEE Conference on Supercomputing (SC 2009), 2009
  149. FEniCS: Automated Computing
    A. Logg
    Workshop on Computational Fluid Dynamics, Simula Research Laboratory, Oslo, 2009
  150. Introduction to FEniCS'09
    A. Logg
    International FEniCS'09 workshop, Simula, June 11-12, 2009
  151. Automatic Code Generation and the FEniCS Project
    A. Logg
    Opportunities and Challenges in Computational Geodynamics, Caltech, March 30, 2009
  152. Automated Finite Element Discretization
    A. Logg
    Workshop on Compatible and Innovative Discretizations for Partial Differential Equations, Oslo, June 18, 2009
  153. Parallel Data Structures and Algorithms in DOLFIN
    A. Logg
    CBC Workshop on High-Performance Computing, Simula, June 16, 2009
  154. DOLFIN: Automated Finite Element Computing
    A. Logg
    ENUMATH'09, Uppsala, July 03, 2009
  155. Automation of Error Control With Application to FSI
    A. Logg
    AC/DC seminar series, 2009
  156. Mathematical Based Imaging of Regional Ischemia
    O. M. Lysaker, B. F. Nielsen, P. Grøttum, K. H. Haugaa, J. G. Fjeld and A. Abildgaard
    World Congress 2009, Medical physics and biomedical engineering, 2009
  157. Real-Time Flow Simulation
    A. E. Løvgren, Y. Maday, E. M. Rønquist and S. Deparis
    The Chiari Institute, New York, January 14, 2009
  158. Real-Time Computation of CSF Flow
    A. E. Løvgren, Y. Maday, E. M. Rønquist and S. Deparis
    Seminar on cerebrospinal fluid flow, University of Wisconsin, Madison, January 16, 2009
  159. The Reduced Basis Element Method: Offline-Online Decomposition in the Nonconforming, Nonaffine Case
    A. E. Løvgren, Y. Maday and E. M. Rønquist
    International Conference on Spectral and High Order Methods (ICOSAHOM), Trondheim, June 22-26, 2009
  160. The Spectral Element Method Used to Assess the Quality of a Deformed Mesh
    A. E. Løvgren, Y. Maday and E. M. Rønquist
    International Conference on Spectral and High Order Methods (ICOSAHOM), Trondheim, June 22-26, 2009
  161. Stabilized Reduced Basis Approximation of the Navier-Stokes Equations in Deformed Domains
    A. E. Løvgren and S. Deparis
    Workshop on Model Reduction of Parametrized Systems, MÜnster, Germany, September 16-18, 2009
  162. Electrotonic Coupling Between Human Atrial Myocytes and Fibroblasts Alters Excitability and Repolarization
    M. M. Maleckar
    GRC Conference - Cardiac Arrhythmia Mechanisms, 2009
  163. Computing and Medical Applications at Simula
    K.-A. Mardal, A. Helgeland, S. Hentschel, H. P. Langtangen, A. Logg, S. Linge, A. E. Løvgren and K. Valen-Sendstad
    CBC Workshop on Computational Biology with Norwegian University of Life Sciences, 2009
  164. Cerebral Blood Flow
    K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
    Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
  165. Patient-Specific Hemodynamics in FEniCS
    K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
    Invited talk at the minisymposium on Computational Vascular and Cardiovascular Mechanics at USNCCM, 2009
  166. Patient-Specific Simulations of Stroke and Syringomyelia
    K.-A. Mardal, S. Hentschel, A. Helgeland, H. P. Langtangen, S. Linge, A. E. Løvgren, A. Logg and K. Valen-Sendstad
    Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, Nov 03, 2009
  167. CSF Flow Modelling
    K.-A. Mardal, V. Haughton, S. Hentschel, H. P. Langtangen, S. Linge, A. E. Løvgren and K. Valen-Sendstad
    CSR Flow Research Conference at University of Wisconsin, Nov 9, 2009
  168. Patient-Specific Hemodynamics in FEniCS
    K.-A. Mardal, A. Logg, S. Hentschel, O. C. Myklebust and K. Valen-Sendstad
    International FEniCS'09 workshop, Simula, June 11-12, 2009
  169. Tiny Introduction to Jabref
    A. Massing
    AC/DC seminar series, 2009
  170. An Informal Guide to Continuum Mechanics
    H. Narayanan
    AC/DC seminar series, 2009
  171. An Informal Guide to Continuum Mechanics, Part II
    H. Narayanan
    AC/DC seminar series, 2009
  172. The Inverse Ischemia Problem; Mathematical Models and Validation
    B. F. Nielsen, O. M. Lysaker, P. Grøttum, K. H. Haugaa, J. G. Fjeld and A. Abildgaard
    Applied Inverse Problems conference, Vienna, Austria, 2009
  173. An Operator Theoretical Approach to Preconditioning Optimality Systems
    B. F. Nielsen and K.-A. Mardal
    Applied Inverse Problems conference, Vienna, Austria, 2009
  174. Recent Contributions to the Inverse Problem of Electrocardiography
    B. F. Nielsen
    Applied Inverse Problems conference, Vienna, Austria, 2009
  175. Modelling, Mathematical Properties and Validation of the Inverse Ischemia Problem
    B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, K. H. Haugaa, A. Abildgaard, J. G. Fjeld and M. Burger
    Bidomain Workshop, Graz, Austria, 2009
  176. Subject Specific Finite Element Analysis of a Callus Distraction - a Preliminary Study
    S. H. Pettersen, A. Aamodt, O. A. Foss and B. H. Skallerud
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  177. Simulation and Visualization of the Early Early Visual System Using PyNEST and ConnPlotter
    H. E. Plesser, K. Austvoll and E. Nordlie
    Kongsberg Vision Meeting, The Norwegian Association of Optometrists, 2009
  178. Mixed Finite Element Methods for Linear Viscoelasticity
    M. E. Rognes
    Compatible and innovative discretizations for PDEs. Algorithms, analysis and implementation. Norwegian Academy of Science and Letters, 2009
  179. Efficient Assembly of H(div) and H(curl) Conforming Variational Forms
    M. E. Rognes
    Chalmers University of Technology, 2009
  180. Automated Error Control. Current Status and Future Ambitions
    M. E. Rognes
    Simula seminar, 2009
  181. Simulating the Heart Valve Dynamics in FEniCS
    K. Selim and A. Logg
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  182. Alternative Elasticity Modeling Approaches for Mitral Valve Analysis: Consequences for Stress and Deformation Prediction
    B. H. Skallerud and V. E. Prot
    22nd Nordic Seminar on Computational Mechanics, Aalborg, Denmark, October 22-23, 2009
  183. Tissue Fiber Families in the Mitral Valve - Constitutive Modelling Numerical Analysis and Potensial Clinical Application
    B. H. Skallerud
    22nd Nordic Seminar on Computational Mechanics, Aalborg, Denmark, October 22-23, 2009
  184. Computer Modeling of Cardiac Electro-Mechanics - Models and Numerical Methods
    J. Sundnes, S. Wall and H. Osnes
    Cardiac Modeling seminar, Simula Research Laboratory, 2009
  185. Multiscale Models of Physiological Systems
    J. Sundnes
    Course "Bioinformatics for molecular biology", University of Oslo, 2009
  186. Simulation of Strongly Coupled Electro-Mechanics in an Infarcted Left Ventricle
    J. Sundnes, S. Wall and H. Osnes
    Bidomain Workshop, Graz, Austria, 2009
  187. Proper Orthogonal Decomposition of Velocity and Scalar Fields in Shear Generated Turbulence
    M. Tutkun, B. A. P. Reif, P. B. V. Johansson and J. Werne
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  188. Optimizations of Common Scientific Kernels on GPU
    D. Unat and S. Baden
    Early Adopters PhD Workshop: Building the Next Generation of Application Scientists, Supercomputing Conference 2009, Portland, 2009
  189. Implementing a k - ε Turbulence Model in the FEniCS Finite Element Programming Environment
    K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  190. Simulation Methodology for Bioflows
    K. Valen-Sendstad, K.-A. Mardal and A. Logg
    Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, May 05, 2009
  191. Numerical Modeling of Aerosol Dispersion Inside a Rotating Aerosol Chamber
    M. Vartdal and B. A. P. Reif
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  192. Large Eddy Simulations of the Evaporation From a Liquid Pool Beneath a Turbulent Air Flow
    T. Vik and B. A. P. Reif
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  193. Parallel Simulation of Dual Lithology Sedimentation
    W. Wei, S. R. Clark, X. Cai and A. M. Bruaset
    NOTUR 2009 conference, Trondheim, May 18-20, 2009
  194. Using Cython to Speed Up Numerical Python Programs
    I. Wilbers, H. P. Langtangen and Å. Ødegård
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  195. Unsteady RANS Modelling of Pollutant Dispersion in an Idealized Urban Area
    E. M. M. Wingstedt and B. A. P. Reif
    MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
  196. A Lumped Particle Modeling Framework for the Transport of Particles
    O. Al-Khayat
    CBC Workshop on Tsunami Modeling, June 3-4, 2010
  197. A Multiscale Lumped Particle Modeling Framework for the Simulation of Turbidity Currents
    O. Al-Khayat
    Poster at the 7th EGU General Assembly, vol 12, Vienna, 2010
  198. Technological Disruption: Opportunities for Change
    S. Baden
    International FEniCS'10 workshop, KTH, Stockholm, 2010
  199. GPUs: Supercomputers for All, Opportunities and Folklore
    S. Baden
    Section for Scientific Computing, Technical University of Denmark, 2010
  200. GPUs: Supercomputers for All, Opportunities and Folklore
    S. Baden
    PDC/CSC, KTH, Stockholm, 2010
  201. Microplate Modeling of the Afar Depression Using 4D Lithospheric Model (4DLM) and Splates: Implications for Development of Plate Boundaries
    H. C. Bender, A. K. Thurmond, J. Skogseid and S. R. Clark
    Geological Society of America, 2010
  202. Computational Simulations of the Shaken Baby Syndrom - History and Challenges
    A. Blechingberg
    AC/DC seminar series, 2010
  203. The Baby Justicia Project: Biomechanical Investigations of the Shaken Baby Syndrome (SBS),
    A. Blechingberg, K.-A. Mardal, F. Strisland, J. Sundnes, T. O. Rognum, Å. Vege, M. Weensvangen and A. Stray-Pedersen
    WCB2010, Seminar session, Head/Brain Injury - Models, 2010., 2010
  204. Comparisons Between the Runup-Models MOST and GEO- CLAW in 2HD
    R. E. Bredesen
    CBC Workshop on Tsunami Modeling, June 3-4, 2010
  205. Detailed Numerical Analyses of the Aliev-Panfilov Model on GPGPU
    X. Cai, D. Unat and S. Baden
    Para 2010: State of the Art in Scientific and Parallel Computing in Reykjavík on June 6-9, 2010
  206. Parallel Programming Using Python
    X. Cai
    CBC Seminar on advanced use of Python programming language, 2010
  207. Effect of Mitral Valve Shape on Flow Dynamics During Left Ventricular Contraction
    S. K. Dahl and B. H. Skallerud
    World Congress in Biomechanics, Singapore, 2010
  208. Mitralklaffens Form I Systolen
    S. K. Dahl
    Rikshospitalet University Hospital, Oslo, Norway, March, 2010
  209. Propagation and Run-Up of Rockslide Generated Tsunamies in Complex Fjord Systems
    S. Glimsdal, C. B. Harbitz, G. K. Pedersen, R. E. Bredesen, A. Jensen and F. Løvholt
    EGU General Assembly, Geophysical Research Abstracts (European Geoscience Union), Copernicus, GmbH, 2010
  210. Modeling of Ca Dynamics in the Dyadic Cleft: Mixing Continuous Description of the Diffusive Process With Discrete Channel Dynamics
    J. E. Hake
    Biological Diffusion and Brownian Dynamics Brainstorm 2, 2010
  211. On Cerebrospinal Fluid Flow
    V. Haughton
    CBC Workshop on Cerebrospinal Fluid Flow in the Brain and Spinal Canal - Clinical, Experimental and Mathematical Models and Problems, Simula, May 28, 2010
  212. Analysis and Implementation of High-Precision Finite Element Methods for Ordinary Differential Equations With Application to the Lorenz System
    B. Kehlet
    AC/DC seminar series, 2010
  213. Meshbuilder Brainstorming
    B. Kehlet
    AC/DC seminar series, 2010
  214. A Reference Solution for the Lorenz System on [0, 1000]
    B. Kehlet and A. Logg
    8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
  215. Computational Modeling of Huge Tsunamis From Asteroid Impacts
    H. P. Langtangen
    Computational Geoscience Seminar, 2010
  216. HPC Needs for Biomedical Flows and Productivity of Future Computational Scientists
    H. P. Langtangen and X. Cai
    National Seminar on Future Needs for eInfrastructure in Norway, 2010
  217. Nya Verktyg, Nyy Möjligheter
    A. Logg
    Sveriges matematiklärarförening (SMaL), 2010
  218. FEniCS 1.0 (?)
    A. Logg
    International FEniCS'10 workshop, KTH, Stockholm, 2010
  219. Automated Scientific Computing
    A. Logg
    Chalmers University of Technology, 2010
  220. Implementation of FEM Assembling in DOLFIN
    A. Logg
    AC/DC seminar series, 2010
  221. Automated Goal-Oriented Error Control
    A. Logg and M. E. Rognes
    China–Norway–Sweden Workshop on Computational Mathematics, 2010
  222. Automated Scientific Computing
    A. Logg
    23rd Chemnitz FEM Symposium, 2010
  223. FEniCS: Automated Scientific Computing
    A. Logg
    8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
  224. Stochastic Variation of Tsunami Run-Ups Due to Heterogenous Slip on Reverse Faults
    F. Løvholt, S. Bazin, R. E. Bredesen, C. B. Harbitz, D. Kohn and H. Bungum
    7th EGU General Assembly, Geophysical Research Abstracts (European Geoscience Union), Copernicus, 2010
  225. Right Through the Heart: Perspectives and Problems
    M. M. Maleckar
    CBC Workshop, Right Through the Heart: Snapshots of Current and Future Research in Cardiac Modeling, 2010
  226. CSF Strømning I Forbindelse Med Chiari Malformasjon Og Syringomyelia
    K.-A. Mardal
    CBC Workshop on Clinical Issues Related to the Cerebrospinal Fluid, 2010
  227. Is Zombies a Threat to Mankind
    K.-A. Mardal, H. P. Langtangen and P. Røtnes
    International FEniCS'10 workshop, KTH, Stockholm, 2010
  228. Convergence Theory for Adaptive Finite Elements
    A. Massing
    AC/DC seminar series, 2010
  229. Nitsche's Method on Overlapping Meshes in 3D
    A. Massing
    AC/DC seminar series, 2010
  230. Introduction to Turbulence Modeling With FEniCS (CBC.RANS)
    M. Mortensen
    CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
  231. The G2 Navier Stokes Solver – on Why It Failed the Benchmark Test
    M. Mortensen
    CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
  232. An Automated Computational Framework for Hyperelasticity
    H. Narayanan
    Fourth European Conference on Computational Mechanics, Paris, France, 2010
  233. An Adaptive, Error-Controlled Scheme for the Navier-Stokes Equations With Applications to Biomedical Flow
    H. Narayanan
    International FEniCS'10 workshop, KTH, Stockholm, 2010
  234. What Is Cbc.twist?
    H. Narayanan
    AC/DC seminar series, 2010
  235. Theoretical and Practical Aspects of the Inverse Ischemia Problem
    B. F. Nielsen, O. M. Lysaker and P. Grøttum
    Karlsruhe Institute of Technology, Germany, 2010
  236. An Operator Theoretical Approach to Preconditioning Optimality Systems
    B. F. Nielsen and K.-A. Mardal
    European Multi-Grid Conference, EMG, 2010
  237. Automated Goal-Oriented Error Control for Stationary Variational Problems
    M. E. Rognes and A. Logg
    International FEniCS'10 workshop, KTH, Stockholm, 2010
  238. Automated Goal-Oriented Error Control for Stationary Variational Problems
    M. E. Rognes and A. Logg
    European Finite Element Fair, University of Warwick, 2010
  239. Automated Goal-Oriented Error Control With Applications to Fluid Flow
    M. E. Rognes and A. Logg
    CBC Workshop on Cerebral Blood Flow and Stroke - Clinical, Experimental and Mathematical Models and Problems, 2010
  240. A Framework for Automated Goal-Oriented Error Control
    M. E. Rognes and A. Logg
    BIT 50 – Trends in Numerical Computing, 2010
  241. Automated Goal-Oriented Error Control With Applications to Nonlinear Elasticity
    M. E. Rognes and A. Logg
    DSPDEs 2010 - Emerging Topics in Dynamical Systems and Partial Differential Equations, Barcelona, 2010
  242. Automated Goal-Oriented Error Control
    M. E. Rognes
    8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
  243. Scientific Computing - the (he)art of Modern Sciences
    A. Schroll
    Forskningens Dag, SDU, 2010
  244. An Adaptive Finite Element Method for Fluid Structure-Interaction Problems
    K. Selim
    International FEniCS'10 workshop, KTH, Stockholm, 2010
  245. A Posteriori Error Analysis of Adaptive Finite Element Methods for Fluid-Structure Interaction
    K. Selim
    AC/DC seminar series, 2010
  246. Using Python for Scientific Computing
    O. Skavhaug
    CBC Seminar on advanced use of Python programming language, 2010
  247. Cerebrospinal Fluid (CSF) - Oscillating Flow and Pressure
    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
    CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
  248. CSF Hydrodynamic in Patients With Syringomyelia and Chiari I Malformations
    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
    Annual NUPUS meeting in Freudenstadt, 2010
  249. Cerebrospinal Fluid (CSF) - Oscillating Flow and Pressure
    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
    Selected Topics Seminar IWS Stuttgart, 2010
  250. From a Physical Problem to Computer Simulations
    K.-H. Støverud, K.-A. Mardal and H. P. Langtangen
    CBC Workshop on Cerebrospinal Fluid Flow in the Brain and Spinal Canal - Clinical, Experimental and Mathematical Models and Problems, Simula, May 28, 2010
  251. Evolution of Functional -Not Architectural Modularity in Body Plan Patterning
    K. ten Tusscher
    EuroEvoDevo conference, Paris, 2010
  252. Evolution of Functional -Not Architectural Modularity in Body Plan Patterning
    K. ten Tusscher
    Dutch Theoretical Biology conference, Schoorl, 2010
  253. Evolution of Complex Animal Body Plans
    K. ten Tusscher
    Dynamics of Patterns and Complex Systems meeting, Enschede, 2010
  254. Optimizing the Aliev-Panfilov Model of Cardiac Excitation on Heterogeneous Systems
    D. Unat, X. Cai and S. Baden
    Para 2010: State of the Art in Scientific and Parallel Computing in Reykjavík on June 6-9, 2010
  255. Revisiting Finite Element Matrix Assembly
    D. Unat
    AC/DC seminar series, 2010
  256. Accelerating Finite Difference Method on Graphic Processors (GPUs)
    D. Unat
    CBC Talk, 2010
  257. Introduction to Programming a GPU With CUDA and a Case Study: Accelerating Stencil Computation With GPUs
    D. Unat and S. Baden
    CBC Seminar on GPU Programming and Computing - May 4, 2010
  258. Mint: an OpenMP to CUDA Translator
    D. Unat
    GPU Technology Conference, San Jose, CA, 2010
  259. A Note on the Efficiency and Accuracy of Some Common Finite Element Schemes for the Incompressible Navier-Stokes Equations
    K. Valen-Sendstad
    AC/DC seminar series, 2010
  260. Presence of Turbulence in Intracranial MCA Aneurysms
    K. Valen-Sendstad
    CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
  261. Towards a Virtual Lung
    A. Wahlberg
    International FEniCS'10 workshop, KTH, Stockholm, 2010
  262. Meshing the Human Lung
    A. Wahlberg
    AC/DC seminar series, 2010
  263. Basic Electromechanical Simulations
    S. Wall
    CBC Seminar Series on Computational Cardiac Modeling, 2010
  264. Parallel Programming, OpenMP
    W. Wei
    CBC Lecture on Parallel Programming, OpenMP, March 17, 2010
  265. The Unified Form Language - a Domain Specific Language for Finite Element Methods
    M. S. Alnæs
    European Numerical Mathematics and Advanced Applications (ENUMATH), 2011
  266. Parallel Simulation of Particle Transport Using OpenMP
    X. Cai
    Guest lecture at UCSD on January 31, 2011
  267. A Function-Centric Generic Framework for Parallelization
    X. Cai
    CLS Workshop at UiO on April 13, 2011
  268. Study of the Computational Efficiency for Different Usages of Pythoning
    X. Cai
    CLS Workshop at UiO on April 13, 2011
  269. Programming With OpenMP and Mixed MPI-OpenMP
    X. Cai
    Invited lecture at pre-conference workshop of NOTUR 2011, 2011
  270. Efficient Computations of Initial-Value Problems Involving Fractional Derivatives
    X. Cai and W. Zhang
    Seminar on wave propagation in complex media, November 23, 2011
  271. Programming With OpenMP and Mixed MPI-OpenMP
    X. Cai
    Invited lecture during USIT's Research Computing Services training week, November 14-17, 2011
  272. A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding
    T. Gillberg
    The 19th International Congress on Modelling and Simulation (MODSIM2011), 2011
  273. Code Generation for Time Dependent Problems
    B. Kehlet
    FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
  274. Computational Modeling of Intracellular Calcium Dynamics in Human Atrial Myocytes: Impact on Action Potential Morphology
    J. Koivumäki
    Seminar at the Technical University of Dresden, Germany, 2011
  275. Kaos I Hjernen - Ny Innsikt Gjennom Simuleringer
    H. P. Langtangen
    The University of Oslo 1-day seminar: Realiseter invaderer helsevesenet, 2011
  276. Abnormal Flows in the Brain and the Spine: How to Better Understand Diseases by Computations
    H. P. Langtangen
    The Computational Life Science seminar, University of Oslo, 2011
  277. Kaos I Hjernen - Ny Innsikt Gjennom Simuleringer
    H. P. Langtangen
    Fysikkforeningen, 2011
  278. Adaptive Finite Element Methods for Fluid-Structure Interaction and Incompressible Flow
    A. Logg
    FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
  279. The FEniCS Project
    A. Logg
    Det Norske Veritas 2011-05-11, 2011
  280. The FEniCS Project
    A. Logg
    NOTUR 2011, University of Oslo, 2011-05-23, 2011
  281. The FEniCS Project
    A. Logg
    Workshop on Multiscale Problems and Methods, Simula Research Laboratory, 2011-06-17, 2011
  282. The FEniCS Project
    A. Logg
    EuroSciPy 2011 / Python in Physics, Ecole normale sup'erieure, Paris, 2011-08-09, 2011
  283. Solving Poisson's Equation With DOLFIN 0.2.11 (2002): a Study of the Portability of Scientific Codes Across the Time Domain
    A. Logg
    Biocomp Seminar, Simula Research Laboratory, 2011-09-28, 2011
  284. Adaptive Finite Element Methods for Fluid-Structure Interaction and Incompressible Flow
    A. Logg
    Simula/NTNU Workshop, Simula Research Laboratory, 2011-11-17, 2011
  285. Efficient Implementation of Nitsche's Method on Overlapping Meshes for Interface Problems in 3D
    A. Massing
    FEF 2011, Munich, Germany, 2011
  286. Efficient Implementation of Nitsche's Method on Overlapping Meshes for Coupled Problems in 3D
    A. Massing
    Coupled Problems 2011, Kos, Greece, 2011
  287. Nitsche's Method for Fictitious Domain and Overlapping Meshes (in 3D)
    A. Massing
    FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
  288. Efficient Implementation of Nitsche's Method on Overlapping Meshes in 3D
    A. Massing
    SIAM CSE Reno, Nevada, USA, 2011
  289. Nitsche's Method for Fictitious Domain and Overlapping Meshes (in 3D)
    A. Massing
    UMIT Research Seminar, Umeå, Sweden, 2011
  290. The Role of K+ Channels in Human Articular Chondrocyte Electrophysiology: a Computational Perspective
    H. Narayanan
    CaMo Seminar, 2011
  291. Finite Element Analysis of the Mitral Valve With Active Muscle Fibres
    V. E. Prot and B. Skallerud
    SIAM CSE Reno, Nevada, USA, 2011
  292. FEniCS After 1.0: Current Trends at CBC@Simula
    M. E. Rognes
    FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
  293. More Or Less Shocking: Using Energy Estimates to Answer Scientific Questions
    M. E. Rognes
    Biocomp Seminar, Simula Research Laboratory, October 2011, 2011
  294. Automated Goal-Oriented Error Control a Posteriori Error Estimation and Adaptivity in Finite Element Exterior Calculus
    M. E. Rognes
    USNCCM '11, Minneapolis, 2011
  295. Bringing Error Control to the Non-Expert - Automation of a Posteriori Error Estimation
    M. E. Rognes
    CBC Workshop on Multiscale Problems and Methods, 2011
  296. Automated Goal-Oriented Error Control
    M. E. Rognes
    CBC workshop on Biomechanics, November 2011, 2011
  297. The FEniCS Project
    M. E. Rognes
    Imperial College, 2011
  298. Goal-Oriented Error Control Automated!
    M. E. Rognes
    SIAM CSE Reno, Nevada, USA, 2011
  299. Error Control and Adaptivity for the Non-Expert
    M. E. Rognes
    CBC Workshop on Biomedical Modeling, 2011
  300. FEniCS: the Next Generation PDE Software
    M. E. Rognes
    CBC Workshop on Biomedical Modeling, 2011
  301. On Automated Computational Modeling in the Geo- and Life Sciences
    A. Schroll
    Numerical methods for hyperbolic equations Recent trends and future directions (SAMHYP), ETH ZÜrich, Switzerland, 2011
  302. Self Calibrating, Adaptive Models in the Geo- and Life Sciences
    A. Schroll
    Inverse Problems Workshop, 2011
  303. Ongoing Research: Characterize CSF Flow and Identify the Cause of Syringomyelia With CFD
    K.-H. Støverud and V. Haughton
    The workshop "Working Toward a Day Without Pain Gala", Buffalo, 2011
  304. Cerebrospinal Fluid (CSF) Oscillating Flow and Pressure
    K.-H. Støverud
    CBC Workshop on CSF Flow Associated with Chiari and Syringomyelia, 2011
  305. Cerebrospinal Fluid (CSF) Flow in Chiari I and Syringomyelia
    K.-H. Støverud
    CBC Seminar / Third semester presentation, 2011
  306. The Use and Potential of FEniCS in Medical Applications
    K.-H. Støverud
    FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
  307. CSF Flow and Pressure in the Cervical Spine
    K.-H. Støverud
    CBC Workshop on Biomedical Modeling, 2011
  308. The Effect of Varying Cross-Sectional Areas on Cerebrospinal Fluid Flow and Pressure in the Cervical Spine
    K.-H. Støverud
    MekIT'11 Sixth national conference on Computational Mechanics, 2011
  309. Computational Cerebral Hemodynamics
    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
    The Norwegian Defence Research Establishment, 2011
  310. Simulation Methodology for Cerebral Blood Flow
    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
    Biomedical Simulation Lab, Institute of Biomaterials and Biomedical Engineering at the University of Toronto, 2011
  311. Direct Numerical Simulation of Transitional Flow in Patient–Specific Intracranial Aneurysms
    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
    ASME 2011 Summer Bioengineering Conference, 2011
  312. 'Turbulence' in Cerebral Aneurysms
    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, H. P. Langtangen, B. A. P. Reif and D. A. Steinman
    CBC workshop on Biomechanics, November 2011, 2011
  313. Multi-Scale Modeling of the Heart - Computational Approaches and Applications to Biomedicine
    S. Wall
    Scientific Computing and Imaging Institute, University of Utah,, 2011
  314. Modeling the Infarct Injured Heart, Insights Into Mechanical Dysfunction
    S. Wall
    SIAM CSE Reno, Nevada, USA, 2011
  315. Modeling Coupled Electromechanics in the Cardiovascular System
    S. Wall, J. Sundnes, N. Trayanova, R. C. P. Kerkhoffs and V. E. Prot
    SIAM CSE Reno, Nevada, USA, 2011
  316. News in C++11
    M. S. Alnæs
    CBC Seminar series, 2012
  317. A Domain Specific Language and Symbolic Library for FEM Formulations of PDEs - the Unified Form Language
    M. S. Alnæs
    FEniCS@Imperial Day, Imperial College London, 2012
  318. Numerical Comparison of Preconditioned Oneshot and Steepest Descent on Linear Elliptic Optimal Control Problems
    M. S. Alnæs
    OCIP 2012, 2012
  319. Efficient Compilation of Complex Tensor Algebra Expressions
    M. S. Alnæs
    FEniCS Workshop 2012, Simula Research Laboratory, 2012
  320. Automation of PDE Constrained Optimization - Algorithmic Differentiation As Abstract Building Blocks in High Level Algorithms
    M. S. Alnæs
    ECCOMAS, 2012
  321. Funding: Deutscher Akademischer Austauschdienst Programme Des Projektbezogenen Personenaustauschs DAADppp Mobility Programme Germany–Norway
    M. Burger and B. F. Nielsen
    Circulation, 125 (18), 2012
  322. Understanding the Performance of Stencil-Based Computations on Multicore CPU
    X. Cai
    CBC Seminar series, 2012
  323. Simulating Basin Evolution on GPU-Enhanced Hybrid Supercomputers
    X. Cai and M. Wen
    META Magazine, Issue 02/2012, pages 22-25, 2012
  324. Scientific Computing Needs Supercomputers, But Also Something Else!
    X. Cai
    Invited lecture at National University of Defence Technology, China, March 29, 2012
  325. Some Perspectives on High-Performance Computing in the Geosciences
    X. Cai
    Computational Geoscience Workshop, 18-20 January 2012 in Geilo, 2012
  326. An Inverse Approach to Stratigraphic Modelling
    S. R. Clark, L. Vynnytska and A. Schroll
    34th International Geological Congress, Brisbane, Australia, 2012
  327. \betaAr-Stimulation Causes EADs But Not DADs in Pre-Failure CAMKII\deltaC Transgenic Myocytes
    A. G. Edwards, J. E. Hake, J. H. Brown and A. McCulloch
    Annual meeting in Biophysical Society, 2012
  328. Non-Newtonian Effects in Cerebral Aneurysms. a Computational Study on 12 Patient Specific Aneurysms
    Ø. Evju
    ICS '12, 2012
  329. On Non-Newtonian Effects in Cerebral Aneurysms: a Computational Study on 12 Patient Specific Aneurysms
    Ø. Evju, K.-A. Mardal and K. Valen-Sendstad
    Proceedings of ASME 2012 Summer Bioengineering Conference, 2012
  330. A Parallel 3D Front Propagation Algorithm for Simulation of Geological Folding on GPUs
    T. Gillberg
    EAGE 74th Conference & Exhibition, 2012
  331. Massively Parallel Front Tracking
    T. Gillberg
    Computational Geoscience Workshop, 18-20 January 2012 in Geilo, 2012
  332. Modeling Calcium Sparks in a Three-Dimensional Reconstruction of a Cardiac Calcium Release Unit
    J. E. Hake, A. G. Edwards, Z. Yu, P. Kekenes-Huskey, A. P. Michailova, A. J. McCammon, M. J. Holst, M. Hoshijima and A. McCulloch
    Annual meeting in Biophysical Society, 2012
  333. Triangular Surface Mesh Improvement and Tetrahedral Mesh Generation Using GAMer and Blender
    J. E. Hake
    CBC Seminar series, 2012
  334. Altered Configurations of Ca2+ Release Units Cause Slowed Ca2+ Sparks in Failing Cardiomyocytes
    J. E. Hake, H. K. Mørk, K. Hougen, I. Sjaastad, O. M. Sejersted and W. E. Louch
    Cardiac Physiom Workshop, San Diego, 2012
  335. CSF Flow: Acquisition Strategies
    V. Haughton
    Lecture at International Society of Magnetic Resonance in Medicine, Orlando, FL, 2012
  336. Robust Mesh Generation
    B. Kehlet
    CBC Seminar series, 2012
  337. Modeling Calcium Dynamics in Realistic Rabbit Ventricular Myocytes With Several Transverse Tubules
    P. M. Kekenes-Huskey, J. E. Hake, Y. Cheng, M. Holst, F. B. Sachse, J. H. Bridge, A. McCulloch, J. A. McCammon and A. Michailova
    Annual meeting in Biophysical Society, 2012
  338. Excitation-Contraction Coupling in Human Atrial Myocytes: Remodeling in Atrial Fibrillation
    J. Koivumäki and P. Tavi
    Seminar at the Institute of Biomedical Engineering, KIT, Germany, 2012
  339. Calcium Buffering in Human Atrial Myocytes
    J. Koivumäki, M. M. Maleckar, T. Christ and N. Rozmaritsa
    CaMo-UCSD Workshop, San Diego, USA, 2012
  340. Divergent Action Potential Morphology in Human Atrial Cells Vs. Tissue: Underlying Ionic Mechanisms
    J. Koivumäki, T. Christ, G. Seemann and M. M. Maleckar
    Computing in Cardiology conference, 2012
  341. Divergent Action Potential Morphology in Human Atrial Cells Vs. Tissue: Underlying Ionic Mechanisms
    J. Koivumäki, T. Christ, G. Seemann and M. M. Maleckar
    EWGCCE meeting, Nantes, France, 2012
  342. Flexible Specification of Large Systems of Nonlinear PDEs
    H. P. Langtangen and M. Mortensen
    Keynote talk at the 2nd HPC^3 Workshop on High-Performance Computing, KAUST, Saudi-Arabia, 2012
  343. Elements of Scientific Computing
    G. T. Lines and X. Cai
    3-day intensive course given at National University of Defence Technology, China, October 16-18, 2012
  344. Towards Modeling Arrhythmogenic Cardiomyopathy – Can Simulation Shed Light on a Complex Disease Process?
    M. M. Maleckar
    Cardiac Physiom Workshop, San Diego, 2012
  345. Efficient Preconditioning of Optimality Systems
    K.-A. Mardal, B. F. Nielsen and M. S. Alnæs
    EMG 2012, 2012
  346. Will FEniCS Fly?
    K.-A. Mardal and H. P. Langtangen
    FEniCS 12 workshop, 2012
  347. Blood Flow in Cerebral Aneurysms – Can Turbulence Be a Risk Indicator?
    K.-A. Mardal
    SDU workshop, 2012
  348. Are Zombies a Threat to Mankind?
    K.-A. Mardal, H. P. Langtangen and P. Røtnes
    Invited talk for the opening of "RF kjelleren" at the University of Oslo, 2012
  349. The Finite Element Library FEniCS + Blood Flow Simulations in Cerebral Aneurysms
    K.-A. Mardal
    Marsden's lab at UCSD, 2012
  350. The Finite Element Library FEniCS
    K.-A. Mardal
    Steinman's lab, University of Toronto, 2012
  351. On Well-Posedness and Stability
    K.-A. Mardal
    CBC Seminar series, 2012
  352. The C(ontinuous) I(nterior) P(enalty) Method
    A. Massing
    CBC Seminar series, 2012
  353. Nitsche-Based Finite Element Methods for the Stokes Problem on Cut and Composite Meshes
    A. Massing
    Brighton, 2012
  354. Nitsche-Based Finite Element Methods for the Stokes Problem on Cut and Composite Meshes
    A. Massing
    Internal seminar, TU Darmstadt, 2012
  355. Nitsche-Based Finite Element Methods Problem on Cut and Composite Meshes – a Look Behind the Scenes
    A. Massing
    ACM Seminar, Institute for Computational Mechanics, TU MÜnchen, 2012
  356. Nitsche-Based Finite Element Methods for the Stokes Problem on Cut and Composite Meshes
    A. Massing
    Graduate School CE Seminar, Darmstadt, 2012
  357. Nitsche-Based Finite Element Methods for the Stokes Problem on Cut and Composite Meshes
    A. Massing
    Internal Seminar, University of Oslo, 2012
  358. Nitsche's Method for Fictitious Domains and Overlapping Meshes: Analysis and Implementation
    A. Massing
    FEniCS 12 workshop, 2012
  359. Nitsche-Based Overlapping and Fictitious Domain Methods for the Stokes Problem
    A. Massing
    Chemnitz FEM Symposium, 2012
  360. Kan Vi Regne Ut Hvem Som Får Hjerneslag?
    M. Mortensen
    Ungforsk 2012, UiO, 2012
  361. Flexible Software Tools for Computational Turbulence
    M. Mortensen
    Keynote talk at the 25th Nordic Seminar on Computational Mechanics, 2012
  362. The Minimal Residual Method Applied to Ill-Posed Optimality Systems; Eigenvalues and Convergence Properties
    B. F. Nielsen and K.-A. Mardal
    Numerical Methods for Optimal Control and Inverse Problems workshop, Munich, Germany, 2012
  363. Effects of an Orthogonal Contractile System in the Anterior Leaflet on the Systolic Mitral Valve Response: a Nonlinear Finite Element Study
    V. E. Prot
    10th International Symposium on Biomechanics and Biomedical Engineering, Berlin, 2012
  364. Techniques for Automated Treatment of Variational Forms Over Arbitrary Dimension Tensor Product Finite Elements
    M. E. Rognes
    CBC Seminar series, 2012
  365. Automated FEniCS Frameworks for Adjoint Models and Their Applications
    M. E. Rognes
    KAUST, 2012
  366. The FEniCS Project: a Short Course
    M. E. Rognes
    KAUST, 2012
  367. Automatically Generated Solvers for Variational Formulations of Time-Dependent Partial Differential Equations
    M. E. Rognes
    ECCOMAS, 2012
  368. The FEniCS Project: a Tutorial
    M. E. Rognes
    Imperial College, 2012
  369. The FEniCS Project: a Modern Framework for the Automated Solution of PDEs by FEM
    M. E. Rognes
    Computational Geoscience workshop, 2012
  370. A DEMOSTRAT Roud-Trip: the Forward and Inverse Model
    A. Schroll
    Geilo Winter School, 2012
  371. Strong Stability Preserving Stochastic Runge Kutta Methods
    A. Schroll
    Geilo Winter School, 2012
  372. High Resolution FV Methods for Stochastic Balance Laws
    A. Schroll
    Intl. Conf. High Performance Scientific Computing, Hanoi, Vietnam, 2012
  373. Intel Many Integrated Core Architecture: Scaling Multi-Core to Many-Core
    M. Sourouri
    University of California, San Diego, 2012
  374. The Relation Between Chiari I and Syringomyelia -Model Concepts
    K.-H. Støverud
    CBC Workshop on Adjoint-Based Methods for Transient Problems: Software and applications, 2012
  375. Relation Between Chiari Malformation and Syringomyelia
    K.-H. Støverud
    Summer School on Modeling and Simulation of Soft Tissue BioMechanics, 2012
  376. CSF Flow Dynamics: Effects of Viscosity and Inertia
    K.-H. Støverud, V. Haughton, H. P. Langtangen and K.-A. Mardal
    ANSR 2012, New York, 2012
  377. Magnetic Resonance Imaging (MRI) - the Basics
    K.-H. Støverud
    CBC Seminar series, 2012
  378. Effects of Pulsatile CSF Pressure on the Spinal Cord Tissue
    K.-H. Støverud
    CBC Seminar series, 2012
  379. Computer Simulations of Electro-Mechanical Interactions in the Heart
    J. Sundnes and S. Wall
    CBC Workshop on Adjoint-Based Methods for Transient Problems: Software and applications, 2012
  380. Numerical Methods for Strongly Coupled Simulations of Cardiac Electro-Mechanics
    J. Sundnes and S. Wall
    Workshop on efficient solvers in biomedical applications, Graz, Austria, 2012
  381. On the Stability of Operator Splitting Schemes for Strongly Coupled Cardiac Electro-Mechanics
    J. Sundnes and S. Wall
    World Congress on Computational Mechanics, Sao Paulo, Brazil, 2012
  382. Computer Models of Electro-Mechanical Interactions in the Contracting Heart
    J. Sundnes and S. Wall
    Workshop on computational models in biomedicine, Federal University of Juiz de Fora, Brazil, 2012
  383. Computer Models of Electro-Mechanical Interactions in the Contracting Heart
    J. Sundnes and S. Wall
    The Norwegian Defence Research Establishment, 2012
  384. Towards Patient-Specific Models of Strongly Coupled Cardiac Electro-Mechanics
    J. Sundnes, S. Wall and S. U. Gjerald
    Cardiac Physiom Workshop, San Diego, 2012
  385. Strongly Coupled Simulations of Cardiac Electro-Mechanics
    J. Sundnes and S. Wall
    CBC seminar, 2012
  386. Computational Models of Electro-Mechanical Interactions in the Infarct Injured Heart
    J. Sundnes and S. Wall
    National PhD conference in medical Imaging, Trondheim, Norway, 2012
  387. Revisiting 'Turbulence' in Cerebral Aneurysms
    K. Valen-Sendstad, K.-A. Mardal and D. A. Steinman
    ECI Conference on Computational Fluid Dynamics (CFD) in Medicine and Biology in conjunction with the Seventh International Biofluid Mechanics Symposium March 25-30, 2012 Crowne Plaza Dead Sea, Ein Bokek, Dead Sea, Israel, 2012
  388. Is CFD Misleading Us About the Nature of Wall Shear Stresses in Cerebral Aneurysms?
    K. Valen-Sendstad and D. A. Steinman
    The 7th International Symposium on Biomechanics in Vascular Biology & Cardiovascular Disease, Atlanta, Georgia, USA, 2012
  389. The Afar Region: Numerical Modeling Using Geological Data
    L. Vynnytska, D. Stegman and S. R. Clark
    EGU general assembly, 2012
  390. Status of Effective Translation of Complicated Forms in FEniCS - the UFLACS Project
    M. S. Alnæs
    Jesus College, Cambrigde, 2013
  391. Towards Navier-Stokes Data Assimilation for Hemodynamics Using Automated Adjoint Methods
    M. S. Alnæs
    V International Symposium on Modelling of Physiological Flows (MPF2013), 2013
  392. Computational Investigation of Parent Artery Flow Reversal for Basilar Top Aneurysm
    M. S. Alnæs
    5th Asia Pacific Congress on Computational Mechanics & 4th International Symposium on Computational Mechanics, 2013
  393. Data Assimilation With Navier-Stokes Splitting Schemes and Dolfin-Adjoint
    M. S. Alnæs
    CBC and CCI Workshop on Advancing Numerical Technologies in the Cardiac Domain, May 15, 2013
  394. Status of Effective Translation of Complicated Forms in FEniCS
    M. S. Alnæs
    CBC Seminar series, 2013
  395. Computing at a Million Mobiles Per Second
    S. Baden
    National University of Defense Technology, Changsha, China, 2013
  396. Computing at a Million Laptops Per Second
    S. Baden
    21st High Performance Computing Symposia, San Diego, 2013
  397. Automatic Differentiation of a Fluid-Structure Interaction Problem
    G. Balaban
    FEniCS'13, Cambridge, 2013
  398. Patient Specific Passive Cardiac Material Parameter Estimation Using Nonlinear Least Squares
    G. Balaban
    Laboratory meeting, 2013
  399. Automatic Differentiation of a Fluid-Structure Interaction
    G. Balaban
    Visit to Univercity of Toronto, 2013
  400. Scientific Computing on Accelerator-Based Supercomputers
    X. Cai
    Guest lecture at FFI, September 20, 2013
  401. Adopting Heterogeneous Hardware Platforms for Scientific Computing
    X. Cai
    Guest lecture at Technical Unviersity of Denmark, December 5, 2013
  402. Introduction to Scientific Writing
    X. Cai
    Intensive course given at National University of Defence Technology, China, October 17-19, 2013
  403. User-Friendly Parallel Programming: Methodologies and Tools
    X. Cai
    Minisymposium at SIAM CSE'13, February 25, 2013
  404. Mint: a User-Friendly C-to-CUDA Code Translator
    X. Cai, D. Unat and S. Baden
    Talk given at SIAM CSE'13, February 25, 2013
  405. PDE-Constrained Optimization Problems With Box Constraints
    O. L. Elvetun and B. F. Nielsen
    International Conference on Preconditioning Techniques for Scientific and Industrial Applications, Oxford, 2013
  406. Patient-Specific Simulations of Vasospasm in 3 Different Cases
    Ø. Evju, K.-A. Mardal, S. J. Bakke and A. G. Sorteberg
    Modelling of physiological flows (MPF 2013), 2013
  407. Using Adjoints to Answer Scientific Questions
    P. Farrell
    CBC and CCI Workshop on Advancing Numerical Technologies in the Cardiac Domain, May 15, 2013
  408. Developing and Implementing Parallel Algorithms for Fold Simulations in 3D
    T. Gillberg
    N/A, 2013
  409. A General ODE Translator (Gotran): Towards a Versatile Tool for General ODEs
    J. E. Hake
    CBC and CCI Workshop on Advancing Numerical Technologies in the Cardiac Domain, May 15, 2013
  410. Analysis of a System of Elliptic Partial Differential Equations and Its Possible Boundary Conditions When Discretized With Hermite and Lagrange Elements
    A. R. Hope
    CBC Seminar series, 2013
  411. Quantifying the Computability of the Lorenz System
    B. Kehlet
    International Conference on Adaptive Modeling and Simulation (ADMOS2013), 2013
  412. Re-Parametrisation of Atrial INa: INa,late and DV/dtmax Dependence on RMP As Test Cases
    J. Koivumäki
    NECCEVISEE Workshop, 2013
  413. Human Atrial Myocyte Studies in Silico
    J. Koivumäki
    NECCEVISEE Workshop, 2013
  414. Bringing Flow Simulations to the Clinic
    H. P. Langtangen
    Invited lecture at the Scientific Computing and Imaging Institute (SCI Institute), University of Utah, USA, 2013
  415. Building Simulation Software for the Next Decade: Tools and Trends
    H. P. Langtangen
    International Workshop on Mantle and Litosphere Dynamics, Klaekken hotel, Norway, 2013
  416. Observability of Ischemia and the Need for Patient Specific Geometrical Models in Inverse ECG
    G. T. Lines, O. M. Lysaker and B. F. Nielsen
    Computing in Cardiology, Zaragoza, Spain, 2013
  417. The FEniCS Project - Organization, Practices, Maintenance and Distribution
    A. Logg
    CBC Seminar series, 2013
  418. Computing Ischemic Regions in the Heart: on the Use of Internal Electrodes
    O. M. Lysaker, B. F. Nielsen and S. Wall
    Computing in Cardiology, 2013
  419. On the Assumption of Laminar Flow in the Modeling of Physiological Flow
    K.-A. Mardal
    Modelling of physiological flows (MPF 2013), 2013
  420. Operator Preconditioning for Well-Posed and Ill-Posed Problems
    K.-A. Mardal
    Preconditioning 2013, 2013
  421. Efficient Preconditioning of Optimality Systems With Non-Self-Adjoint State Operators
    K.-A. Mardal and B. F. Nielsen
    IFIP 2013, minisymposia Preconditioning for PDE-Constrained Optimization, Linz, Austria, 2013
  422. A Robust Nitsche-Based Fixed-Grid Method for Fluid Problems With Applications to Domain-Bridging and FSI Problems
    A. Massing
    FEF2013, San Diego, 2013
  423. Analysis and Implementation of Nitsche-Based Domain-Bridging Method for Fluid Problems
    A. Massing
    SIAM CSE'13, Boston, 2013
  424. Finite Element Methods for Cut and Composite Meshes Using FEniCS
    A. Massing
    FEniCS'13, Cambridge, 2013
  425. Cut and Composite Mesh Methods for Fluid-Structure Interaction Problems With Large Deformation
    A. Massing
    Coupled Problems 2013, Ibiza, 2013
  426. Nitsche-Based Finite Element Methods on Cut and Composite Meshes
    A. Massing
    AMCG Seminar, Imperial College, London, 2013
  427. Nitsche-Based Finite Element Methods on Cut and Composite Meshes
    A. Massing
    USNCCM12, Raleigh, 2013
  428. Nitsche-Based Cut and Composite Mesh Methods for Fluid and Fluid-Structure Interaction Problems
    A. Massing
    XFEM 2013, Lyon, 2013
  429. Computing Physiological Flows: From Cutting Meshes and Automated Code Generation to Optimization of Flow
    A. Massing
    Mox Seminar, Politecnico di Milano, Milan, 2013
  430. FEniCS: a Free Software for the Automated and Efficient Solution of Differential Equations
    M. Mortensen
    University of Waterloo, Department of Mechanical and Mechatronics Engineering, Seminar Series, 2013
  431. FEniCS and Its Application in Biomedical Computing
    M. Mortensen
    Charles University in Prague, Czech Republic, 2013
  432. Preliminary Study of the Impact of Spinal Cord Nerve Roots and Denticulate Ligaments on Drug Movement in the Cervical Spinal Subarachnoid Space
    M. Mortensen
    Nordic Semiar on Computational Mechanics, 2013
  433. FEniCS on a Moebius Strip
    M. E. Rognes
    CBC Seminar series, 2013
  434. Solving PDEs Over Manifolds With FEniCS
    M. E. Rognes
    FEniCS'13, Cambridge, 2013
  435. An Adjoint-Enabled Simulation Framework for Cardiac Electrophysiology
    M. E. Rognes
    CBC/CCI workshop "Advancing numerical technologies in the cardiac domain", 2013
  436. Nitsche Based Methods for Unfitted Meshes for the Brinkman Problem
    J. Sogn
    CBC Seminar series, 2013
  437. Automated Code Generation for Coupling Heterogeneous Computing Devices
    M. Sourouri
    Extreme Scaling Workshop 2013, Boulder, CO, USA, 2013
  438. When One GPU Is Not Enough
    M. Sourouri
    HPC workshop, Simula Research Laboratory, Oslo, Norway, 2013
  439. Effect of Oscillatory CSF Pressure on Fluid Movement in the Spinal Cord
    K.-H. Støverud
    V International Symposium on Modelling of Physiological Flows (MPF2013), 2013
  440. Effect of Oscillatory Cerebrospinal Fluid Pressure on the Spinal Cord Tissue
    K.-H. Støverud
    CBC Seminar series, 2013
  441. Patient-Specific Models of Cardiac Electro-Mechanics
    J. Sundnes
    Federal University of Juiz de Fora, 2013
  442. Impact of CFD Solution Strategy on Predicted Aneurysm Hemodynamics: Good News and Bad News
    K. Valen-Sendstad and D. A. Steinman
    8th International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, Rotterdam, 2013
  443. Impact of CFD Solution Strategy on Predicted Aneurysm Hemodynamics: Good News and Bad News
    K. Valen-Sendstad
    CBC Seminar series, 2013
  444. An Adjoint-Enabled Simulation Framework for Cardiac Electrophysiology
    M. E. Rognes
    FEniCS'14 Workshop, University of Chicago center in Paris, France, 2014
  445. Arrhythmogenic Mechanisms and Therapeutic Targets for Catecholaminergic Polymorphic Ventricular Tachycardia: A Simulation Study in a Human Ventricular Myocyte
    N. Gaur, L. Qiang, X. Cai and Y. Rudy
    Simula Research Laboratory, 2014
  446. PDE-Constrained Optimisation in Hilbert Spaces
    S. W. Funke and M. Nordaas
    FEniCS'14 Workshop, University of Chicago center in Paris, France, 2014
  447. Mathematical Modeling of Ca Handling and Computational Studies of Ca-related Arrhythmogenesis in Heart
    N. Gaur, Q. Lan, X. Cai and Y. Rudy
    National University of Defense Technology, China, 2014
  448. A generic right ventricle model for simulating patient-specific pacing procedures from echocardiography data
    S. U. Gjerald, S. Sarvari, H. H. Odland and S. Wall
    Workshop on Models for surgical decision support at VPH2014 in Trondheim, 2014
  449. CCFEM implementation in FEniCS
    A. Logg
    Simula multiphysics workshop, 2014
  450. Automated Solution of Differential Equations
    A. Logg
    Computer science and engineering seminar, Chalmers University of Technology, Gothenburg, Sweden, 2014
  451. A Finite Element method for the Einstein-Vlasov system
    A. Logg
    Biocomp lunch seminar, Simula, Oslo, 2014
  452. An Adjoint-Enabled Simulation Framework for Cardiac Electrophysiology
    M. E. Rognes
    CBC and CCI Workshop on Cardiac Modelling at Simula Research Laboratory, Fornebu, 2014
  453. Metamodelling of Structural Abnormalities in the ARVC Heart
    K. S. Mcleod, K. Tøndel, S. Wall and J. Saberniak
    VPH conference workshop on Metamodelling methodology for easing model construction and validation, 2014
  454. Periodic table of the Finite Elements (part I)
    A. Logg
    Computational and Applied Mathematics seminar, Chalmers University of Technology, Gothenburg, Sweden, 2014
  455. Perspectives on the Current State of the Art of Computational Modelling of Fluid Flow in the Brain Parenchyma
    M. E. Rognes
    CBC and CINPLA Workshop on Modelling Liquid Transport in the Brain, Simula Research Laboratory, Fornebu, 2014
  456. Automated Solution of Differential Equations
    A. Logg
    Hyperfit seminar, University of Copnehagen, Denmark, 2014
  457. Periodic table of the Finite Elements (part II)
    A. Logg
    Computational and Applied Mathematics seminar, Chalmers University of Technology, Gothenburg, Sweden, 2014
  458. Periodic table of the Finite Elements (part III)
    A. Logg
    Computational and Applied Mathematics seminar, Chalmers University of Technology, Gothenburg, Sweden, 2014
  459. Multimesh FEM in FEniCS
    A. Logg
    FEniCS'14 Workshop, University of Chicago center in Paris, France, 2014
  460. Mshr - Mesh Generation in FEniCS
    B. Kehlet
    FEniCS'14 Workshop, University of Chicago center in Paris, France, 2014
  461. Robust Preconditioners for PDE-Constrained Optimization With Limited Observations
    M. Nordaas
    European Multigrid Conference, 2014
  462. High level abstractions for finite element methods – The Unified Form Language and the FEniCS project
    M. S. Alnaes
    CBC/Uppsala workshop, Simula Research Laboratory, 2014
  463. Automated Solution of Differential Equations
    A. Logg
    Svenska matematikersamfunnets høstmøte, 2014
  464. Action Potential Repolarisation in Healthy and Fibrillating Human Atria: Contribution of Small Conductance Calcium-Activated Potassium Channels
    J. Koivumäki, L. Skibsbye, T. Christ, M. Maleckar and T. Jespersen
    Conference of the Scandinavian Physiological Society, 2014
  465. Periodic table of the Finite Elements
    A. Logg
    Biocomp lunch seminar, Simula, Oslo, 2014
  466. Passive Cardiac Mechanics Calibration Using Reduced Order Unscented Kalman Filtering
    G. Balaban
    Uppsala-Simula Scientific Computing Seminar, 2014
  467. Minimization of Multi-Penalty Functionals by Alternating Iterative Thresholding and Optimal Parameter Choices
    V. Naumova
    SIAM Conference on Uncertainty Quantification, 2014
  468. Meta-Learning Based Blood Glucose Predictor for Diabetic Smartphone App
    V. Naumova
    SIAM Conference on Imaging Science, 2014
  469. In Silico Physiological Flows
    M. E. Rognes
    Seminar in connection with Villani visit at Simula Research Laboratory, Fornebu, 2014
  470. Computational Models of Cardiac Electrophysiology in Healthy and Fibrillating Human Atria
    J. Koivumäki
    Seminar at the Institute of Experimental and Clinical Pharmacology and Toxicology, UKE, Hamburg, 2014
  471. Er Zombier En Trussel Mot Menneskeheten?
    K.-A. Mardal, T. Seland, H. P. Langtangen and P. Røtnes
    Upop aften - Det norske student samfund, 2014
  472. High-Level Advanced Abstractions and Techniques in Finite Element Software
    M. E. Rognes
    CBC Workshop on Computational Modeling with Applications in Biomedicine and Geophysics at Simula Research Laboratory, 2014
  473. On the Assumption of Laminar Flow in the Modeling of Physiological Flow
    K.-A. Mardal
    Anvendt og beregningsorientert matematikk, Bergen, 2014
  474. Automated Goal-Oriented Error Control and Adaptivity
    M. E. Rognes
    RCN site visit to the CBC, Simula Research Laboratory, Fornebu, 2014
  475. On the Assumption of Laminar Flow of CSF in Chiari Patients
    K.-A. Mardal, A. Helgeland, V. Haughton, B. A. P. Reif and K.-H. Støverud
    international Chiari Research Group, 2014
  476. Computing at a Million of Mobiles Per Second
    S. Baden
    Rutgers University, 2014
  477. CSF Flow at Foramen Magnum
    K.-A. Mardal, K.-H. Støverud, G. Ringstad and P. K. Eide
    International Hydrocephalus Imaging Working Group, Montreal, Canada, 2014
  478. Embedded domain specific languages: How everyone can be an expert performance programmer
    S. Baden
    Stony Brook University, Dept of Biomedical Informatics, 2014
  479. On Numerical Methods for Transitional Flow - Application to Blood Flow in Aneurysms
    K.-A. Mardal, O. M. Khan, K. Valen-Sendstad and D. A. Steinman
    Quality and Validation of Computational Cardio-vascular Biomechanics, WCCM-ECCM-ECCOM, 2014
  480. Engineering for High Performance through Domain Specific Translations
    S. Baden
    Royal Institute of Technology, Stockholm, Sweden, 2014
  481. Cerebrospinal Fluid Flow in Association With the Central Nervous System - Chiari and Drug Delivery
    K.-A. Mardal, K.-H. Støverud, M. Mortensen, K. Jain, B. Martin and S. Pahlavian
    MS on Computational Biomechanics, WCCM-ECCM-ECCOM, 2014
  482. Engineering for High Performance through Domain Specific Translations
    S. Baden
    Computer Science Department, University in Uppsala, 2014
  483. How to Easily Implement Sophisticated Tailored Algorithms in Computational Turbulence
    H. P. Langtangen
    Department of Mathematics, University of Oxford, UK, 2014
  484. Cut Finite Element Methods for Fluid and Fluid-Structure Interaction Problems
    A. Massing
    Advances in Fluid-Structure Interaction, Tokyo, 2014
  485. Patient Specific Models of Cardiac Electro-Mechanics
    J. Sundnes, S. Wall, S. U. Gjerald, J. E. Hake and B. L. d. Oliveira
    Seminar at Ecole des Mines, St Etienne, France, 2014
  486. Code Generation for High-Level Problem Specification and HPC
    H. P. Langtangen
    London University College, London, UK, 2014
  487. Cut Finite Element Methods for Multi-Physics Problems (in FEniCS!)
    E. Burman, S. Claus, P. Hansbo, M. G. Larson and A. Massing
    18th European Conference on Mathematics for Industry, 2014
  488. Lecture on PDE-constrained optimization with FEniCS
    S. W. Funke
    Zhjiang University, Hangzhou, China, 2014
  489. The Unified Form Language – Features, implementation and future
    M. S. Alnaes
    PRISM Workshop, Imperial College London, 2014
  490. Computational Models of Electro-Mechanical Interactions in the Heart
    J. Sundnes, S. Wall, S. Pezzuto, J. E. Hake and B. L. d. Oliveira
    the European Conference for Mathematics in Industry, Taormina, Italy, 2014
  491. Meta-Learning Approach to the Image Denoising Problem
    V. Naumova
    SIAM Conference on Imaging Science, 2014
  492. Adaptive Finite Elements: Practice and Implementation
    M. E. Rognes
    Centre for Mathematics for Applications, University of Oslo, 2014
  493. Multi-Scale Modeling of the Failing Heart:
From Mouse to Man
    A. D. McCulloch
    Simula-UiO-UCSD Summer School in Cardiac Modeling, 2014
  494. Computational Models of Electro-Mechanical Interactions in the Heart
    J. Sundnes
    The Nordic Seminar on Computational Mechanics, Stockholm, 2014
  495. FEniCS - A Free Software Framework for Efficient Solution of Differential Equations, with Applications in Mechanics
    M. Mortensen
    Prague, 2014
  496. It's not the size, but what you do with it: CFD solver settings trump model resolution.
    K. Valen-Sendstad, O. M. Khan, M. Piccinelli and D. A. Steinman
    Zurich, 2014
  497. Supercomputing-Enabled Study of Subcellular Calcium Dynamics
    X. Cai, J. E. Hake and G. T. Lines
    Article in "meta" - a magazine published by the notur project, 2014
  498. Vad går at berekna, vad går inte? Om fraktaler - matematiske fantasiskapelser - och kaos
    A. Logg
    Talk at Senioruniversitetet in Stockholm, 2014

Posters

  1. A Stochastic Model of the Ryanodine Receptor Featuring Coupled Gating and Competitive Binding of Luminal and Cytosolic Ca2+ and Mg2+
    J. E. Hake, W. E. Louch, K. Haugen, I. Sjaastad, S. O. M., A. D. McCulloch, A. P. Michailova and G. T. Lines
    Annual meeting in Biophysical Society, 2011
  2. Contributions of Multiple T-Tubules and Membrane Ca2+ Flux Localization to Sub-Cellular Ca2+ Signaling in Rabbit Ventricular Myocytes
    P. Kekenes-Huskey, J. E. Hake, Y. Cheng, F. Sachse, J. Bridge, A. McCammon and A. P. Michailova
    2. Gordon Research Conferences: Calcium Signalling, 2011
  3. Contributions of Structural T-Tubule Heterogeneities and Membrane Ca2+ Flux Localization to Local Ca2+ Signaling in Rabbit Ventricular Myocytes
    P. Kekenes-Huskey, J. E. Hake, Y. Cheng, F. Sachse, J. Bridge, A. J. McCammon and A. P. Michailova
    4th Cardiac Physiome Workshop, Merton College, Oxford, 2011
  4. Excitation-contraction Coupling in Human Atrial Myocytes: Remodeling in Atrial Fibrillation
    J. Koivumäki
    35th Meeting of the European Working Group on Cardiac Cellular Electrophysiology, 2011
  5. Rate-Dependent Regulation of Sarcoplasmic Reticulum Ca2+ ATPase in Human Atrial Myocytes
    J. Koivumäki
    The Scandinavian Physiological Society Annual Meeting, 2011
  6. PDE-Constrained Optimization Problems With Box Constraints; Effective Solution and Real World Applications
    O. L. Elvetun and B. F. Nielsen
    Applied Inverse Problems, Daejeon, South Korea, 2013
  7. Mechanisms Promoting Chronic Atrial Fibrillation: Role of Remodelled Intracellular Calcium Handling and Cellular Hypertrophy
    J. Koivumäki, M. Maleckar and P. Tavi
    Gordon Research Conference on Cardiac Arrhythmia Mechanisms, 2013
  8. The Controversial Late INa in Human Atrial Myocytes: a Computational Analysis of Ranolazine's Effects
    J. Koivumäki, T. Christ, U. Ravens and M. Maleckar
    37th Annual Meeting of the ESC Working Group on Cardiac Cellular Electrophysiology, 2013

Preprints

  1. A Multilevel Solver for Gaussian Constrained CMB Realizations
    D. S. Seljebotn, K.-A. Mardal, J. Jewell, H. K. Eriksen and P. Bull
    2013