CBC Publications

CBC only reports publications where a significant part of the research has been funded by CBC. By this we mean that at least one of the authors of the reported publications must have his/her main affiliation with CBC, and has contributed to the publication as laid out in Simula's publication guidelines.

Publications from people with part time positions at CBC are generally not counted, unless the research is particularly relevant for a CBC project. Such exceptions from the main rule are few, and must in all cases be approved by the director of the center.

Authors in bold are part of CBC

Articles in International Journals

1. Computation of Hemodynamics in the Circle of Willis
   M. S. Alnaes, J. G. Isaksen, K.-A. Mardal, B. Romner, M. K. Morgan and T. Ingebrigtsen
   Stroke, vol. 38, pp. 2500—2505, 2007
2. Vorticity–strain Residual-Based Turbulence Modelling of the Taylor–Green Vortex
   R. E. Bensow, M. G. Larson and P. Westerlund
   International Journal for Numerical Methods in Fluids, vol. 54, pp. 745—756, 2007
3. A Unified Framework of Multi-Objective Cost Functions for Partitioning Unstructured Finite Element Meshes
   X. Cai and N. Bouhmala
   Applied Mathematical Modelling, vol. 31, pp. 1711—1728, 2007
4. A Note on the Efficiency of the Conjugate Gradient Method for a Class of Time-Dependent Problems
   X. Cai, B. F. Nielsen and A. Tveito
   Numerical Linear Algebra with Applications, vol. 14, pp. 459—467, 2007
5. Tsunami Generation and Propagation From the Mjølnir Asteroid Impact
   S. Glimsdal, G. K. Pedersen, H. P. Langtangen, V. Shuvalov and H. Dypvik
   Metheoritics & Planetary Science, vol. 42, pp. 1473—1493, 2007
6. An Unconditionally Stable Numerical Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
   M. Hanslien, J. Sundnes and A. Tveito
   Mathematical Biosciences, vol. 208, pp. 375—392, 2007
7. A Sharp Interface Finite Element Method for Elliptic Interface Problems; Formulation and Investigation in One Space Dimension
   K. Holmås and H. P. Langtangen
   International Journal of Pure and Applied Mathematics, vol. 34, pp. 287—312, 2007
8. Efficient Compilation of a Class of Variational Forms
   R. C. Kirby and A. Logg
   ACM Transactions on Mathematical Software, vol. 33, 2007
9. Adaptive Finite Element Approximation of Multiphysics Problems
   M. G. Larson and F. Bengzon
   Communications in Numerical Methods in Engineering, vol. 24, pp. 505—521, 2007
10. Automating the Finite Element Method
    A. Logg
    Archives of Computational Methods in Engineering, vol. 14, pp. 93—138, 2007
11. A Comparison of Non-Standard Solvers for ODEs Describing Cellular Reactions in the Heart
    M. MacLachlan, J. Sundnes and R. J. Spiteri
    Computer Methods in Biomechanics and Biomedical Engineering, vol. 10, pp. 317—326, 2007
12. A Linear System of Partial Differential Equations Modeling the Resting Potential of a Heart With Regional Ischemia
    M. MacLachlan, J. Sundnes, O. Skavhaug, O. M. Lysaker, B. F. Nielsen and A. Tveito
    Mathematical Biosciences, vol. 210, pp. 238—252, 2007
13. An Order Optimal Solver for the Discretized Bidomain Equations
    K.-A. Mardal, B. F. Nielsen, X. Cai and A. Tveito
    Numerical Linear Algebra with Applications, vol. 14, pp. 83—98, 2007
14. Order Optimal Preconditioners for Implicit Runge-Kutta Schemes Applied to Parabolic PDE's
    K.-A. Mardal, T. K. Nilssen and G. A. Staff
    SIAM Journal on Scientific Computing, vol. 29, pp. 361—375, 2007
15. Using Python to Solve Partial Differential Equations
    K.-A. Mardal, O. Skavhaug, G. T. Lines, G. A. Staff and Å. Ødegård
    Computing in Science & Engineering, vol. 9, pp. 48—51, 2007
16. Optimal Monodomain Approximations of the Bidomain Equations
    B. F. Nielsen, T. S. Ruud, G. T. Lines and A. Tveito
    Applied Mathematics and Computation, vol. 184, pp. 276—290, 2007
17. On the Possibility for Computing the Transmembrane Potential in the Heart With a One Shot Method; an Inverse Problem
    B. F. Nielsen, X. Cai and O. M. Lysaker
    Mathematical Biosciences, vol. 210, pp. 523—553, 2007
18. On the Use of the Resting Potential and Level Set Methods for Identifying Ischemic Heart Disease; an Inverse Problem
    B. F. Nielsen, O. M. Lysaker and A. Tveito
    Journal of Computational Physics, vol. 220, pp. 772—790, 2007
19. Transversely Isotropic Membrane Shells With Application to Mitral Valve Mechanics. Constitutive Modelling and Finite Element Implementation
    V. E. Prot, B. H. Skallerud and G. A. Holzapfel
    International Journal for Numerical Methods in Engineering, vol. 71, pp. 987—1008, 2007
20. A Finite Element Method for Modelling Electromechanical Wave Propagation in Anisotropic Piezoelectric Media
    S. Rahman, H. P. Langtangen and C. H. W. Barnes
    Communications in Computational Physics, vol. 2, pp. 271—292, 2007
21. Pulse-Induced Acoustoelectric Vibrations in Surface-Gated GaAs-Based Quantum Devices
    S. Rahman, T. M. Stace, H. P. Langtangen, M. Kataoka and C. H. W. Barnes
    Physical Review B: Condensed Matter and Materials Physics, vol. 75, 2007
22. On the Accuracy of Operator Splitting As Applied to Discretized Reaction Diffusion Systems
    A. Schroll, G. T. Lines and A. Tveito
    International Journal of Computer Mathematics, vol. 84, pp. 871—885, 2007
23. Two-Parameter Fracture Mechanics and Circumferential Crack Growth in Surface Cracked Pipelines Using Line-Spring Elements
    E. Berg, B. H. Skallerud and C. Thaulow
    Engineering Fracture Mechanics, vol. 75, pp. 17—30, 2008
24. Ultimate Fracture Capacity of Pressurized Pipes With Defects - Comparisons of Large Scale Testing and Numerical Simulations
    E. Berg, E. Østby, C. Thaulow and B. H. Skallerud
    Engineering Fracture Mechanics, vol. 75, pp. 2352—2366, 2008
25. Tracking Airborne Legionella and Legionella Pneumophila at a Biological Treatment Plant
    J. M. Blatny, B. A. P. Reif, G. Skogan, Ø. Andreassen, E. A. Høiby, E. Ask, V. Waagen, D. Aanonsen, I. S. Aaberge and D. A. Caugant
    Enviromental Science & Technology, vol. 42, pp. 7360—7367, 2008
26. Mechanisms of Transmurally Varying Myocyte Electromechanics in an Integrated Computational Model
    S. G. Campbell, S. N. Flaim, C. H. Leem and A. D. McCulloch
    Philosophical Transactions of the Royal Society A, vol. 366, pp. 3361–3380, 2008
27. Convection Models in the Kamchatka Region Using Imposed Plate Motion and Thermal Histories
    S. R. Clark and R. D. MÜller
    Journal of Geodynamics, vol. 46, pp. 1—9, 2008
28. Episodicity in Back-Arc Tectonic Regimes
    S. R. Clark, D. Stegman and R. D. MÜller
    Physics of the Earth and Planetary Interiors, vol. 171, pp. 265—279, 2008
29. An Explicit Finite Difference Scheme for the Camassa-Holm Equation
    G. M. Coclite, K. H. Karlsen and N. H. Risebro
    Advances in Differential Equations, vol. 13, pp. 681—732, 2008
30. Discovering Regulators of the Drosophila Cardiac Hypoxia Response Using Automated Phenotyping Technology
    J. D. Feala, J. H. Omens, G. Paternostro and A. D. McCulloch
    Annals of the New York Academy of Science, vol. 1123, pp. 169—177, 2008
31. Stochastic Binding of Ca2+ in the Dyadic Cleft: Continuous Vs. Random-Walk Description of Diffusion
    J. E. Hake and G. T. Lines
    Biophysical Journal, vol. 94, pp. 4184—4201, 2008
32. A Pseudospectral Fourier Method for a 1D Incompressible Two-Fluid Model
    H. Holmås, D. Clamond and H. P. Langtangen
    International Journal for Numerical Methods in Fluids, vol. 58, pp. 639—658, 2008
33. Algorithms and Data Structures for Multi-Adaptive Time-Stepping
    J. Jansson and A. Logg
    ACM Trans. Math. Software, vol. 35, pp. 1—24, 2008
34. Unified Finite Element Discretizations of Coupled Darcy-Stokes Flow
    T. K. Karper, K.-A. Mardal and R. Winther
    Numerical Methods for Partial Differential Equations, vol. 25, pp. 311—326, 2008
35. Effect of Heterogeneous APD Restitution on VF Organization in a Model of the Human Ventricles
    R. H. Keldermann, K. ten Tusscher, M. P. Nash, R. Hren, P. Taggart and A. V. Panfilov
    American Journal of Physiology - Heart and Circulatory Physiology, vol. 294, pp. H764—H774, 2008
36. Cardiac Resynchronization: Insight From Experimental and Computational Models
    R. C. P. Kerckhoffs, J. Lumens, K. Vernooy, J. H. Omens, L. J. Mulligan, T. Delhaas, T. Arts, A. D. McCulloch and F. W. Prinzen
    Progress in Biophysics and Molecular Biology, vol. 97, pp. 543—561, 2008
37. Benchmarking Domain-Specific Compiler Optimizations for Variational Forms
    R. C. Kirby and A. Logg
    ACM Transactions on Mathematical Software, vol. 35, pp. 1—18, 2008
38. The Role of Mechanoelectric Feedback in Vulnerability to Electric Shock
    W. Li, V. Gurev and A. D. McCulloch
    Progress in Biophysics and Molecular Biology, vol. 97, pp. 461—478, 2008
39. On the Frequency of Automaticity During Ischemia in Simulations Based on Stochastic Perturbations of the Luo-Rudy 1 Model
    S. Linge, G. T. Lines, J. Sundnes and A. Tveito
    Computers in Biology and Medicine, vol. 38, pp. 1218—1227, 2008
40. On the Applicability of Bovine Morsellized Cortico-Cancellous Bone As a Substitute for Human Morsellized Cortico-Cancellous Bone for in Vitro Mechanical Testing
    K. B. Lunde, O. A. Foss and B. H. Skallerud
    Journal of Biomechanics, vol. 41, pp. 3469—3474, 2008
41. Constitutive Models for Constrained Compression of Unimpacted and Impacted Human Morselized Bone Grafts
    K. B. Lunde, O. A. Foss, L. Fosse and B. H. Skallerud
    Journal of Biomechanical Engineering, vol. 130, pp. 61014, 2008
42. The Fluid Phase of Morsellized Bone: Characterization of Viscosity and Chemical Composition
    K. B. Lunde, M. Sletmoen, B. T. Stokke and B. H. Skallerud
    Journal of the Mechanical Behavior of Biomedical Materials, vol. 1, pp. 199—205, 2008
43. Conditional Velocity Statistics in the Double Scalar Mixing Layer - a Mapping Closure Approach
    M. Mortensen and S. M. d. B. Kops
    Combustion Theory and Modelling, vol. 12, pp. 929—941, 2008
44. Penalty Methods for the Numerical Solution of American Multi-Asset Option Problems
    B. F. Nielsen, O. Skavhaug and A. Tveito
    Journal of Computational and Applied Mathematics, vol. 222, pp. 3—16, 2008
45. Automated Code Generation for Discontinuous Galerkin Methods
    K. B. Oelgaard, A. Logg and G. N. Wells
    SIAM Journal on Scientific Computing, vol. 31, pp. 849—864, 2008
46. Fracture of Anodic-Bonded Silicon-Thin Film Glass-Silicon Triple Stacks
    L. Y. Shang, Z. L. Shang and B. H. Skallerud
    Engineering Fracture Mechanics, vol. 75, pp. 1064—1082, 2008
47. Analysis of a 1D Incompressible Two-Fluid Model Including Artificial Diffusion
    H. Sira, T. Nordsveen, H. P. Langtangen and R. Shulkes
    IMA Journal of Applied Mathematics, pp. 651—667, 2008
48. Modeling of the Ventricular Conduction System
    K. ten Tusscher and A. V. Panfilov
    Progress in Biophysics and Molecular Biology, vol. 96, pp. 152—170, 2008
49. Three-Component Vectorial Proper Orthogonal Decomposition of Axisymmetric Wake Behind a Disk
    M. Tutkun, P. B. V. Johansson and W. K. George
    AIAA Journal, vol. 46, pp. 1118—1134, 2008
50. A Condition for Setting Off Ectopic Waves in Computational Models of Excitable Cells
    A. Tveito and G. T. Lines
    Mathematical Biosciences, vol. 213, pp. 141—150, 2008
51. A View Toward the Future of Subsurface Characterization: CAT Scanning Groundwater Basins
    J. T.-C. Yeh, C.-H. Lee, K.-C. Hsu, W. A. Illman, W. Barrash, X. Cai, J. Daniels, E. Sudicky, L. Wan, G. Li and C. L. Winter
    Water Resources Research, vol. 44, 2008
52. Surface Roughness Characterization for Fatigue Life Predictions Using Finite Element Analysis
    S. K. Ås, B. H. Skallerud and B. W. Tveiten
    International Journal of Fatigue, vol. 30, pp. 2200—2209, 2008
53. Unified Framework for Finite Element Assembly
    M. S. Alnaes, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
    International Journal of Computational Science and Engineering, vol. 4, pp. 231—244, 2009
54. Stability of Lagrange Elements for the Mixed Laplacian
    D. N. Arnold and M. E. Rognes
    Calcolo, vol. 46, pp. 245—260, 2009
55. Bifurcating Solutions to the Monodomain Model Equipped With FitzHugh-Nagumo Kinetics
    R. Artebrant
    Journal of Applied Mathematics, vol. 2009, 2009
56. Cyclic Plasticity Modelling for ANDES Thin Shell and Line-Spring Finite Elements
    E. Berg, K. H. Holthe and B. H. Skallerud
    International Journal of Applied Mechanics, vol. 1, pp. 201—233, 2009
57. A Multilevel Approach for the Satisfiability Problem
    N. Bouhmala and X. Cai
    ISAST Transactions on Computers and Intelligent Systems, vol. 1, pp. 29—37, 2009
58. Aproaching Cardiac Modeling Challenges to Computer Science With CellMl-Based Web Tools
    R. S. Campos, R. M. Amorim, C. M. Costa, B. L. d. Oliveira, C. Barbosa, J. Sundnes and R. W. dos Santos
    Future Generation Computer Systems, vol. 26, pp. 462—470, 2009
59. Double Large Field Stereoscopic PIV in a High Reynolds Number Turbulent Boundary Layer
    S. Coudert, J. M. Foucaut, J. Kostas, M. Stanislas, P. Braud, C. Fourment, J. Delville, M. Tutkun, F. Mehdi, P. B. V. Johansson and W. K. George
    Experiments in Fluids, pp. 1—12, 2009
60. Adaptive Finite Element Simulation of Ventricular Fibrillation Dynamics
    P. Deuflhard, B. Erdmann, R. Roitzsch and G. T. Lines
    Computing and Visualization in Science, vol. 12, pp. 201—205, 2009
61. Mind the Gap: a Guideline for Large Eddy Simulation
    W. K. George and M. Tutkun
    Philosophical Transactions of the Royal Society A, vol. 367, pp. 2839—2847, 2009
62. Lagrangian Particle Dispersion in Turbulent Flow Over a Wall Mounted Obstacle
    D. G. E. Grigoriadis and S. C. Kassinos
    International Journal of Heat and Fluid Flow, vol. 30, pp. 462—470, 2009
63. Immersed Boundary Method for the MHD Flows of Liquid Metals
    D. G. E. Grigoriadis, S. C. Kassinos and E. V. Votyakov
    Journal of Computational Physics, vol. 228, pp. 903—920, 2009
64. An Unconditionally Stable Second Order Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
    M. Hanslien, R. Artebrant, J. Sundnes and A. Tveito
    International Journal of Numerical Analysis and Modeling, vol. 6, pp. 627—641, 2009
65. Motion of the Cerebellar Tonsils in the Foramen Magnum During the Cardiac Cycle
    V. Haughton and J. Cousins
    American Journal of Neuroradiology, vol. 30, pp. 1587—1588, 2009
66. An Assessment of Ductus Venosus Tapering and Wave Transmission From the Fetal Heart
    L. R. Hellevik, J. Vierendeels, T. Kiserud, N. Stergiopulos, F. Irgens, E. Dick, K. Riemslagh and P. Verdonck
    Biomechanics and Modeling in Mechanobiology, vol. 8, pp. 509—517, 2009
67. A Computational Study of Mother Rotor VF in the Human Ventricles
    R. H. Keldermann, K. ten Tusscher, M. P. Nash, C. P. Bradley, R. Hren, P. Taggart and A. V. Panfilov
    American Journal of Physiology - Heart and Circulatory Physiology, vol. 296, pp. H370—H379, 2009
68. Intracellular Ca2+ Nonlinear Wave Behaviours in a Three Dimensional Ventricular Cell Model
    P. Li and A. V. Holden
    Physica D: Nonlinear Phenomena, vol. 238, pp. 992—999, 2009
69. Synchronizing Computer Simulations With Measurement Data for a Case of Atrial Flutter
    G. T. Lines, S. Linge, M. MacLachlan and A. Tveito
    Annals of Biomedical Engineering, vol. 37, pp. 1287—1293, 2009
70. Numerical Solution of the Bidomain Equations
    S. Linge, J. Sundnes, M. Hanslien, G. T. Lines and A. Tveito
    Philosophical Transactions of the Royal Society A, vol. 367, pp. 1931—1951, 2009
71. Efficient Representation of Computational Meshes
    A. Logg
    International Journal of Computational Science and Engineering, vol. 4, pp. 283—295, 2009
72. The Modified Cam Clay Model for Constrained Compression of Human Morsellised Bone: Effects of Porosity on the Mechanical Behaviour
    K. B. Lunde and B. H. Skallerud
    Journal of the Mechanical Behavior of Biomedical Materials, vol. 2, pp. 43—50, 2009
73. Global C¹ Maps on General Domains
    A. E. Løvgren, Y. Maday and E. M. Rønquist
    Mathematical Models and Methods in Applied Sciences (M3AS), vol. 19, pp. 803—832, 2009
74. Direct Simulation of the Limiting Flux: I. Interpretation of the Experimental Results
    S. Ma, S. C. Kassinos and D. Kassinos
    Journal of Membrane Science, vol. 337, pp. 81—91, 2009
75. K+ Current Changes Account for the Rate Dependence of the Action Potential in the Human Atrial Myocyte
    M. M. Maleckar, J. L. Greenstein, W. R. Giles and N. A. Trayanova
    American Journal of Physiology - Heart and Circulatory Physiology, vol. 297, pp. 1398—1410, 2009
76. Electrotonic Coupling Between Human Atrial Myocytes and Fibroblasts Alters Excitability and Repolarization
    M. M. Maleckar, J. L. Greenstein, W. R. Giles and N. A. Trayanova
    Biophysical Journal, vol. 97, pp. 2179—2190, 2009
77. Derivation of the Conditional Moment Closure Equations for Spray Combustion
    M. Mortensen and R. W. Bilger
    Combustion and Flame, vol. 156, pp. 62—72, 2009
78. Preconditioning by Inverting the Laplacian; an Analysis of the Eigenvalues
    B. F. Nielsen, A. Tveito and W. Hackbusch
    IMA Journal of Numerical Analysis, vol. 29, pp. 24—42, 2009
79. Towards a Computational Method for Imaging the Extracellular Potassium Concentration During Regional Ischemia
    B. F. Nielsen, X. Cai, J. Sundnes and A. Tveito
    Mathematical Biosciences, vol. 220, pp. 118—130, 2009
80. Subject Specific Finite Element Analysis of Implant Stability for a Cementless Femoral Stem
    S. H. Pettersen, T. S. Wik and B. H. Skallerud
    Clinical Biomechanics, vol. 24, pp. 480—487, 2009
81. Subject Specific Finite Element Analysis of Stress Shielding Around a Cementless Femoral Stem
    S. H. Pettersen, T. S. Wik and B. H. Skallerud
    Clinical Biomechanics, vol. 24, pp. 196—202, 2009
82. Towards Reproducible Descriptions of Neuronal Network Models
    H. E. Plesser, M.-O. Gewaltig and E. Nordlie
    PLoS Computational Biology, vol. 5, 2009
83. Nonlinear Solid Finite Element Analysis of Mitral Valves With Heterogeneous Leaflet Layers
    V. E. Prot and B. H. Skallerud
    Computational Mechanics, vol. 43, pp. 353—368, 2009
84. Towards Sensitizing the Nonlinear v^2 - f Model to Turbulence Structures
    B. A. P. Reif, M. Mortensen and C. A. Langer
    Flow, Turbulence and Combustion, vol. 83, pp. 185—203, 2009
85. Efficient Assembly of H(div) and H(curl) Conforming Finite Elements
    M. E. Rognes, R. C. Kirby and A. Logg
    SIAM Journal on Scientific Computing, vol. 36, pp. 4130—4151, 2009
86. Modelling of and Mixed Finite Element Methods for Gels in Biomedical Applications
    M. E. Rognes, M.-C. Calderer and C. Micek
    SIAM Journal on Applied Mathematics, vol. 70, pp. 1305—1329, 2009
87. Characterization of CSF Hydrodynamics in the Presence and Absence of Tonsillar Ectopia by Means of Computational Flow Analysis
    A. Roldan, O. Wieben, V. Haughton, T. Osswald and C. N.
    American Journal of Neuroradiology, vol. 30, pp. 941—946, 2009
88. A Computationally Efficient Method for Determining the Size and Location of Myocardial Ischemia
    T. S. Ruud, B. F. Nielsen, O. M. Lysaker and J. Sundnes
    IEEE Transactions on Biomedical Engineering, vol. 56, pp. 263—272, 2009
89. Evaluation of Fracture Mechanics Parameters for Free Edges in Multi-Layered Structures With Weak Singularities
    L. Y. Shang, Z. L. Zhang and B. H. Skallerud
    International Journal of Solids and Structures, vol. 46, pp. 1134—1148, 2009
90. Comments on the Evaluation of the Stress Intensity Factor for a General Re-Entrant Corner in Anisotropic Bi-Materials
    L. Y. Shang, Z. L. Zhang and B. H. Skallerud
    Engineering Fracture Mechanics, vol. 76, pp. 1373—1379, 2009
91. Idiopathic Syringomyelia: Phase-Contrast MR of Cerebrospinal Fluid Flow Dynamics at Level of Foramen Magnum
    A. F. Struck and V. Haughton
    Radiology, vol. 253, pp. 184—90, 2009
92. A Second Order Algorithm for Solving Dynamic Cell Membrane Equations
    J. Sundnes, R. Artebrant, O. Skavhaug and A. Tveito
    IEEE Transactions on Biomedical Engineering, vol. 56, pp. 2546—2548, 2009
93. Organization of Ventricular Fibrillation in the Human Heart: Experiments and Models
    K. ten Tusscher, A. Mourad, M. P. Nash, R. H. Clayton, C. P. Bradley, D. J. Paterson, R. Hren, M. Hayward, A. V. Panfilov and P. Taggart
    Experimental Physiology, vol. 94, pp. 553—562, 2009
94. The Role of Genome and Gene Regulatory Network Canalization in the Evolution of Multi-Trait Polymorphisms and Sympatric Speciation.
    K. ten Tusscher and P. Hogeweg
    BMC Evolutionary Biology, vol. 9, pp. 159, 2009
95. In Situ Calibration of Hot Wire Probes in Turbulent Flows
    M. Tutkun, W. K. George, J. M. Foucaut, S. Coudert, M. Stanislas and J. Delville
    Experiments in Fluids, vol. 46, pp. 617—629, 2009
96. Two-Point Correlations in High Reynolds Number Flat Plate Turbulent Boundary Layers
    M. Tutkun, W. K. George, J. Delville, M. Stanislas, P. B. V. Johansson, J. M. Foucaut and S. Coudert
    Journal of Turbulence, vol. 10, 2009
97. A Note on a Method for Determining Advantageous Properties of an Anti-Arrhythmic Drug Based on a Mathematical Model of Cardiac Cells
    A. Tveito and G. T. Lines
    Mathematical Biosciences, vol. 217, pp. 167—173, 2009
98. Analytic Models of Heterogenous Magnetic Fields for Liquid Metal Flow Simulations
    E. V. Votyakov, S. C. Kassinos and X. Albets-Chico
    Theoretical and Computational Fluid Dynamics, vol. 23, pp. 571—578, 2009
99. The Multigrid Algorithm Applied to a Degenerate Equation; a Convergence Analysis
    A. A. V´zquez and B. F. Nielsen
    Journal of Computational and Applied Mathematics, vol. 225, pp. 251—267, 2009
100. Variational Multiscale Turbulence Modelling in a High Order Spectral Element Method
     C. E. Wasberg, T. Gjesdal, B. A. P. Reif and Ø. Andreassen
     Journal of Computational Physics, vol. 228, pp. 7333—7356, 2009
101. Analysis of Tracer Tomography Using Temporal Moments of Tracer Breakthrough Curves
     J. Zhu, X. Cai and J. T.-C. Yeh
     Advances in Water Resources, vol. 32, pp. 391—400, 2009
102. A Lumped Particle Modeling Framework for Simulating Particle Transport in Fluids
     O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
     Communications in Computational Physics, vol. 8, pp. 115—142, 2010
103. On the Efficiency of Symbolic Computations Combined With Code Generation for Finite Element Methods
     M. S. Alnaes and K.-A. Mardal
     ACM Transactions on Mathematical Software, vol. 37, 2010
104. A Method for Analyzing the Stability of the Resting State for a Model of Pacemaker Cells Surrounded by Stable Cells
     R. Artebrant, A. Tveito and G. T. Lines
     Mathematical Biosciences and Engineering, vol. 7, pp. 505—526, 2010
105. Adaptive Finite Element Approximation of Multiphysics Problems: a Fluid-Structure Interaction Model Problem
     F. Bengzon and M. G. Larson
     International Journal for Numerical Methods in Engineering, vol. 84, pp. 1451—1465, 2010
106. Residual Based VMS Subgrid Modeling for Vortex Flows
     R. E. Bensow and M. G. Larson
     Computer Methods in Applied Mechanics and Engineering, vol. 199, pp. 802—809, 2010
107. Stability Analysis of the Inverse Transmembrane Potential Problem in Electrocardiography
     M. Burger, K.-A. Mardal and B. F. Nielsen
     Inverse Problems, vol. 26, 2010
108. Coupling of Adjacent Tropomyosins Enhances Cross-Bridge-Mediated Cooperative Activation in a Markov Model of the Cardiac Thin Filament
     S. G. Campbell, F. V. Lionetti, K. S. Campbell and A. D. McCulloch
     Biophysical Journal, vol. 98, pp. 2254—2264, 2010
109. Blockwise Adaptivity for Time Dependent Problems Based on Coarse Scale Adjoint Solutions
     V. Carey, D. Estep, A. Johansson, M. G. Larson and S. Tavener
     SIAM Journal on Scientific Computing, vol. 32, pp. 2121—2145, 2010
110. FSI-Simulation of Asymmetric Mitral Valve Dynamics During Diastolic Filling
     S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, L. R. Hellevik and B. H. Skallerud
     Accepted for publication in Computer Methods in Biomechanics and Biomedical Engineering, 2010
111. Consequence Assessment of Indoor Dispersion of Sarin-A Hypothetical Scenario
     M. Endregård, B. A. P. Reif, T. Vik and O. Busmundrud
     Journal of Hazardous Materials, vol. 176, pp. 381—388, 2010
112. Numerical Analysis of Ca2+ Signaling in Rat Ventricular Myocotes With Realistic Transverse-Axial Tubular Geometry and Inhibited Sarcoplasmic Reticilum
     G. Erikstad, Z. Yu, M. Hoshijima, M. J. Holst, A. D. McCulloch, J. A. McCammon and A. P. Michailova
     Accepted for publication in PLoS Computational Biology, 2010
113. Systems Approaches and Algorithms for Discovery of Combinatorial Therapies
     J. D. Feala, J. Cortes, P. M. Duxbury, C. Piermarocchi, A. D. McCulloch and G. Paternostro
     Wiley Interdisciplinary Reviews: Systems Biology and Medicine, vol. 2, pp. 93, 2010
114. MHD Flow Past a Circular Cylinder Using the Immersed Boundary Method
     D. G. E. Grigoriadis, I. E. Sarris and S. C. Kassinos
     Computers & Fluids, vol. 39, pp. 345—358, 2010
115. An Adaptive Finite Element Method for Second-Order Plate Theory
     P. Hansbo, D. Heintz and M. G. Larson
     International Journal for Numerical Methods in Engineering, vol. 81, pp. 584—603, 2010
116. Characterization of Cyclical CSF Flow in the Foramen Magnum and Upper Cervical Spinal Canal With MR Flow Imaging and Computational Fluid Dynamics
     S. Hentschel, K.-A. Mardal, A. E. Løvgren, S. Linge and V. Haughton
     American Journal of Neuroradiology, vol. 31, pp. 997—1002, 2010
117. Convergence Analysis of Finite Element Method Approximations of Joule Heating Problem in Three Spatial Dimensions
     M. Holst, M. G. Larson, A. Målqvist and R. Söderlund
     Accepted for publication in BIT, 2010
118. A Convergent Nonconforming Finite Element Method for Compressible Stokes Flow
     K. H. Karlsen and T. K. Karper
     SIAM Journal on Numerical Analysis, vol. 48, pp. 1846—1876, 2010
119. Ventricular Dilation and Electrical Dyssynchrony Synergistically Increase Regional Mechanical Non-Uniformity But Not Mechanical Dyssynchrony; a Computational Model
     R. C. P. Kerckhoffs, J. H. Omens, A. D. McCulloch and L. J. Mulligan
     Circulation: Heart Failure, vol. 3, pp. 528—536, 2010
120. Computational Modeling of the Initiation and Development of Spontaneous Intracellular Ca2+ Waves in Ventricular Myocytes
     P. Li, W. Wei, X. Cai, C. Soeller, M. Cannell and A. V. Holden
     Philosophical Transactions of the Royal Society A, vol. 368, pp. 3953—3965, 2010
121. Sex Differences in Intracranial Arterial Bifurcations
     H. Lindekleiv, K. Valen-Sendstad, M. K. Morgan, K.-A. Mardal, K. Faulder, J. Magnus, K. Waterloo, B. Romner and T. Ingebrigtsen
     Gender Medicine, vol. 7, pp. 149—155, 2010
122. CSF Flow Dynamics at the Cranio-Vertebral Junction Studied With an Idealized Model of the Subarachnoid Space and Computational Flow Analysis
     S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
     American Journal of Neuroradiology, vol. 31, pp. 185—192, 2010
123. DOLFIN: Automated Finite Element Computing
     A. Logg and G. N. Wells
     ACM Transactions on Mathematical Software, vol. 37, 2010
124. Control of Ca2+ Release by Action Potential Configuration in Normal and Failing Murine Cardiomyocytes
     W. E. Louch, J. E. Hake, G. F. Jølle, H. K. Mørk, I. Sjaastad, G. T. Lines and O. M. Sejersted
     Biophysical Journal, vol. 99, pp. 1377—1386, 2010
125. Fibroblast-Myocyte Coupling Induces Alterations in Potassium Currents That Trigger Regional Action Potential Duration (APD) Prolongation in Infarcted Myocardium
     K. McDowell, H. Arevalo, M. M. Maleckar, R. C. Blake and N. A. Trayanova
     Heart Rhythm, vol. 5S, pp. 163—164, 2010
126. Assessment of the Finite Volume Method Applied to the v^2 -F Model
     M. Mortensen, B. A. P. Reif and C. E. Wasberg
     International Journal for Numerical Methods in Fluids, vol. 63, pp. 495—516, 2010
127. In Silico Estimates of the Free Energy Changes in Growing, Avascular, Tumor Spheroids
     H. Narayanan, S. N. Verner, K. L. Mills, R. Kemkemer and K. Garikipati
     Journal of Physics: Condensed Matter, vol. 22, 2010
128. Efficient Preconditioners for Optimality Systems Arising in Connection With Inverse Problems
     B. F. Nielsen and K.-A. Mardal
     SIAM Journal on Control and Optimization, vol. 48, pp. 5143—5177, 2010
129. Simplifying the Parallelization of Scientific Codes by a Function-Centric Approach in Python
     J. K. Nilsen, X. Cai, B. Høyland and H. P. Langtangen
     Computational Science & Discovery, vol. 3, pp. 015003, 2010
130. Order Optimal Preconditioners for Fully Implicit Runge-Kutta Schemes Applied to the Bidomain Equations
     T. K. Nilssen, G. A. Staff and K.-A. Mardal
     Numerical Methods for Partial Differential Equations, 2010
131. Visualizing Neuronal Network Connectivity With Connectivity Pattern Tables
     E. Nordlie and H. E. Plesser
     Frontiers in Neuroinformatics, vol. 3, pp. 1—15, 2010
132. On Modelling and Analysis of Healthy and Pathological Human Mitral Valves: Two Case Studies
     V. E. Prot, B. H. Skallerud, G. Sommer and G. A. Holzapfel
     Journal of the Mechanical Behavior of Biomedical Materials, vol. 3, pp. 167—177, 2010
133. Mixed Finite Element Methods for Viscoelasticity With Weak Symmetry
     M. E. Rognes and R. Winther
     Mathematical Models and Methods in Applied Sciences (M3AS), vol. 20, pp. 955—985, 2010
134. Wire Tension Versus Wire Frequency: an Experimental Ilizarov Frame Study
     V. L. Russa, B. H. Skallerud, J. Klaksvik and O. A. Foss
     Journal of Biomechanics, vol. 43, pp. 2327—2331, 2010
135. Reduction in Wire Tension Caused by Wire Clamping and Wire Tensioner Removal: an Experimental Ilizarov Frame Study
     V. L. Russa, B. H. Skallerud, J. Klaksvik and O. A. Foss
     Accepted for publication in Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine, 2010
136. Modeling Active Muscle Contraction in Mitral Valve Leaflets During Systole: a First Approach
     B. H. Skallerud, V. E. Prot and I. S. Nordrum
     Biomechanics and Modeling in Mechanobiology, pp. 1—16, 2010
137. Computing the Stability of Steady-State Solutions of Mathematical Models of the Electrical Activity in the Heart
     A. Tveito, O. Skavhaug, G. T. Lines and R. Artebrant
     Accepted for publication in Computers in Biology and Medicine, 2010
138. Accuracy and Reproducibility of Phase-Contrast MR Imaging Measurements for CSF Flow
     A. L. Wentland, O. Wieben, F. R. Korosec and V. Haughton
     American Journal of Neuroradiology, vol. 31, pp. 1331—1336, 2010
139. Computational Vascular Fluid–structure Interaction: Methodology and Application to Cerebral Aneurysms
     B. Y., M.-C. Hsu, Y. Zhang, W. Wang, T. Kvamsdal, S. Hentschel and J. G. Isaksen
     Biomechanics and Modeling in Mechanobiology, vol. 9, pp. 481—498, 2010
140. Void Coalescence With Or Without Prestrain
     Z. L. Zhang and B. H. Skallerud
     International Journal of Damage Mechanics, vol. 19, pp. 153—174, 2010
141. Particle Collisions in a Lumped Particle Model
     O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
     Communications in Computational Physics, vol. 10, pp. 823—843, 2011
142. Dispersion of Legionella-Containing Aerosols From a Biological Treatment Plant
     J. M. Blatny, H. E. Fossum, J. Ho, M. Tutkun, G. Skogan, Ø. Andreassen, E. M. Fykse, V. Waagen and B. A. P. Reif
     Frontiers in Bioscience, vol. E3, pp. 1300—1309, 2011
143. Efficient Block Preconditioners for the Coupled Equations of Pressure and Deformation in Highly Discontinuous Media
     J. B. Haga, H. Osnes and H. P. Langtangen
     International Journal for Numerical and Analytical Methods in Geomechanics, vol. 35, pp. 1466—1482, 2011
144. A Posteriori Error Estimates for Continuous/discontinuous Galerkin Approximations of the Kirchhoff–Love Plate
     P. Hansbo and M. G. Larson
     Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 3289—3295, 2011
145. A Finite Element Method With Discontinuous Rotations for the Mindlin-Reissner Plate Model
     P. Hansbo, D. Hentza and M. G. Larson
     Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 638—648, 2011
146. Energy Norm a Posteriori Error Estimates for Discontinuous Galerkin Approximations of the Linear Elasticity Problem
     P. Hansbo and M. G. Larson
     Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 3026—3030, 2011
147. Stability of Two Time-Integrators for the Aliev-Panfilov System
     M. Hanslien, R. Artebrant, A. Tveito, G. T. Lines and X. Cai
     International Journal of Numerical Analysis and Modeling, vol. 8, pp. 427—442, 2011
148. Improvement in Pump Function With Endocardial Biventricular Pacing Increases With Activation Time at the Left Ventricular Pacing Site in Failing Canine Hearts
     E. J. Howard, j. W. Covell, L. J. Mulligan, A. D. McCulloch, J. H. Omens and R. C. P. Kerckhoffs
     American Journal of Physiology - Heart and Circulatory Physiology, vol. 301, pp. H1447—H1455, 2011
149. Adaptive Component Mode Synthesis in Linear Elasticity
     H. Jakobsson, F. Bengzon and M. G. Larson
     International Journal for Numerical Methods in Engineering, vol. 86, pp. 829—844, 2011
150. A Posteriori Error Analysis of Component Mode Synthesis for the Elliptic Eigenvalue Problem
     H. Jakobsson and M. G. Larson
     Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 2840—2847, 2011
151. Flow Characteristics in a Canine Aneurysm Model: a Comparison of 4-D Accelerated Phase-Contrast MR Measurements and Computational Fluid Dynamics Simulations
     J. Jiang, K. Johnson, K. Valen-Sendstad, K.-A. Mardal, O. Wieben and C. Strother
     Medical Physics, vol. 38, pp. 6300—6313, 2011
152. A Posteriori Error Estimates for Mixed Finite Element Approximations of Parabolic Problems
     M. G. Larson and A. Målquist
     Numerische Mathematik, vol. 118, pp. 33—48, 2011
153. Effect of Tonsilar Herniation on Cyclic CSF Flow Studied With Computational Flow Analysis
     S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland and H. P. Langtangen
     American Journal of Neuroradiology, vol. 32, pp. 1474—1481, 2011
154. Preconditioning Discretizations of Systems of Partial Differential Equations
     K.-A. Mardal and R. Winther
     Numerical Linear Algebra with Applications, vol. 18, pp. 1—40, 2011
155. Susceptibility to Reentry in the Infarcted Heart Depends on the Active Fibroblast Density
     K. McDowell, H. Arevalo, M. M. Maleckar and N. Trayanova
     Biophysical Journal, vol. 110, pp. 1307—15, 2011
156. A FEniCS-Based Programming Framework for Modeling Turbulent Flow by the Reynolds-Averaged Navier-Stokes Equations
     M. Mortensen, H. P. Langtangen and G. Wells
     Advances in Water Resources, vol. 34, pp. 1082—1101, 2011
157. N-Version Benchmark Evaluation of Cardiac Tissue Electrophysiology Simulators
     S. Niederer, E. Kerfoot, A. Benson, M. Bernabeu, O. Bernus, C. Bradley, E. Cherry, R. Clayton, F. Fenton, A. Garny, E. Heidenreich, S. Land, M. M. Maleckar, P. Pathmanathan, G. Plank, J. Rodriguez, I. Roy, F. Sachse, G. Seemann, O. Skavhaug and N. Smith
     Philosophical Transactions of the Royal Society A, vol. 369, pp. 4331—51, 2011
158. Order Optimal Preconditioners for Fully Implicit Runge-Kutta Schemes Applied to the Bidomain Equations
     T. K. Nilssen, G. A. Staff and K.-A. Mardal
     Numer. Methods Partial Differential Equations, vol. 27, pp. 1290—1312, 2011
159. An Adaptive Finite Element Splitting Method for the Incompressible Navier-Stokes Equations
     K. Selim, A. Logg and M. G. Larson
     Computer Methods in Applied Mechanics and Engineering, vol. 209-212, pp. 54—65, 2011
160. CSF Flow Through the Upper Cervical Spinal Canal in Chiari I Malformation
     S. Shah, V. Haughton and A. M. D. Río
     American Journal of Neuroradiology, vol. 32, pp. 1149—1153, 2011
161. CSF Flow in Chiari I and Syringomyelia From the Perspective of Computational Fluid Dynamics
     K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
     The Neuroradiology Journal, vol. 24, pp. 20—23, 2011
162. Existence of Excitation Waves for a Collection of Cardiomyocytes Electrically Coupled to Fibroblasts
     A. Tveito, G. T. Lines, R. Artebrant, O. Skavhaug and M. M. Maleckar
     Mathematical Biosciences, pp. 79—86, 2011
163. Unstable Eigenmodes As Possible Drivers for Cardiac Arrhythmias
     A. Tveito, G. T. Lines, O. Skavhaug and M. M. Maleckar
     Journal of the Royal Society Interface, vol. 8, pp. 1212—6, 2011
164. Computing the Stability of Steady-State Solutions of Mathematical Models of the Electrical Activity in the Heart
     A. Tveito, O. Skavhaug, G. T. Lines and R. Artebrant
     Mathematical Biosciences and Engineering, vol. 41, pp. 611—618, 2011
165. On Defining Candidate Drug Characteristics for Long-QT
     A. Tveito, G. T. Lines, P. Li and A. D. McCulloch
     Mathematical Biosciences and Engineering, vol. 8, pp. 861—873, 2011
166. Direct Numerical Simulation of Transitional Flow in a Patient–Specific Intracranial Aneurysm
     K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
     Journal of Biomechanics, vol. 44, pp. 2826—2832, 2011
167. Modeling the Evaporation From a Thin Liquid Surface Beneath a Turbulent Boundary Layer
     T. Vik and B. A. P. Reif
     International Journal of Thermal Sciences, vol. 50, pp. 2311—2317, 2011

Books

1. Python Scripting for Computational Science
   H. P. Langtangen
   Springer, 2008
2. A Primer on Scientific Programming With Python
   H. P. Langtangen
   Springer, 2009
3. Statistical Theory and Modeling for Turbulent Flows
   P. A. Durbin and B. A. P. Reif
   Wiley, 2010
4. Elements of Scientific Computing
   A. Tveito, H. P. Langtangen, B. F. Nielsen and X. Cai
   Springer, 2010
5. A Primer on Scientific Programming With Python
   H. P. Langtangen
   Springer, 2011

Edited Books

1. Quantitative Information Fusion for Hydrological Sciences
   X. Cai and J. T.-C. Yeh
   Springer, 2008
2. MekIT´09. Fifth National Conference on Computational Mechanics
   B. H. Skallerud and H. I. Andersson
   Tapir Academic Press, 2009
3. Scale Space and Variational Methods in Computer Vision
   X.-C. Tai, K. Mørken, O. M. Lysaker and K.-A. Lie
   Springer, 2009
4. Simula Research Laboratory — by Thinking Constantly About It
   A. Tveito, A. M. Bruaset and O. Lysne
   Springer, 2009

Chapters in Books

1. A Hybrid Approach to Efficient Finite Element Code Development
   A. Logg, K.-A. Mardal, M. S. Alnaes, H. P. Langtangen and O. Skavhaug
   in Petascale Computing – Algorithms and Applications, Edited by D. A. Bader, Chapman and Hall, chapter 19, 2007
2. The Reduced Basis Element Method for Fluid Flows
   A. E. Løvgren, E. M. Rønquist and Y. Maday
   in Analysis and Simulation of Fluid Dynamics, Edited by C. Calgaro, J.-F. Coulombel and T. Goudon, Birkhäuser, chapter 8, pp. 129—154, 2007
3. A Multilevel Greedy Algorithm for the Satisfiability Problem
   N. Bouhmala and X. Cai
   in Advances in Greedy Algorithms, Edited by W. Bednorz, IN-TECH Education and Publishing, chapter 3, pp. 39—54, 2008
4. On the Efficiency of Python for High-Performance Computing: a Case Study Involving Stencil Updates for Partial Differential Equations
   H. P. Langtangen and X. Cai
   in Modeling, Simulation and Optimization of Complex Processes, Edited by H. G. Bock, E. Kostina, H. X. Phu and R. Rannacher, Springer, pp. 337—358, 2008
5. Att Lösa En Differentialekvation
   A. Logg
   in Människor och matematik. Läsebok för nyfikna, Edited by O. Helenius and K. Wallby, Nationellt centrum för matematikutbildning, NCM, chapter 3, pp. 95—110, 2008
6. Turning Rocks Into Knowledge — Experiences and Results From an Industrial Collaboration in Computational Geosciences
   A. M. Bruaset
   in Simula Research Laboratory — by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 40, pp. 553—600, 2009
7. Scientific Computing: Why - How - What - What's Next
   H. P. Langtangen and J. Sundnes
   in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 18, pp. 237—248, 2009
8. The Hamming Experience
   H. P. Langtangen and O. Lysne
   in Simula Research Laboratory — by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 5, pp. 33—36, 2009
9. Computer Simulations of the Heart
   G. T. Lines and J. Sundnes
   in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 20, pp. 259—276, 2009
10. Past and Future Perspectives on Scientific Software
    A. Logg, H. P. Langtangen and X. Cai
    in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 23, pp. 321—362, 2009
11. Can ECG Recordings and Mathematics Tell the Condition of Your Heart?
    B. F. Nielsen, O. M. Lysaker, P. Grøttum, K.-A. Mardal, A. Tveito, C. Tarrou, K. H. Haugaa, A. Abildgaard and J. G. Fjeld
    in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, chapter 22, pp. 287—319, 2009
12. A Computational Framework for Patient-Specific Multi-Scale Cardiac Modeling
    J. Aguado-Sierra, R. C. P. Kerckhoffs, F. V. Lionetti, D. Hunt, C. Villongco, M. Gonzales, S. G. Campbell and A. D. McCulloch
    in Patient-Specific Modeling of the Cardiovascular System; Technology-Driven Personalized Medicine, Edited by R. C. Kerckhoffs, Springer, chapter 12, pp. 202—223, 2010
13. The Mjølnir Tsunami
    S. Glimsdal, G. K. Pedersen, H. P. Langtangen, V. Shuvalov and H. Dypvik
    in The Mjølnir Impact Event and its Consequences, Edited by F. Tsikalas, H. Dypvik and M. Smelror, Springer, chapter 10, pp. 257—271, 2010
14. Diagnostic Properties of Structure Tensors in Turbulent Flows,
    D. G. E. Grigoriadis, C. A. Langer and S. C. Kassinos
    in Direct and Large-Eddy Simulation VII, Edited by V. Armenio, B. Geurts and J. Fröhlich, Springer, 2010
15. Parallel Computing Engines for Subsurface Imaging Technologies
    J. T.-C. Yeh, X. Cai, H. P. Langtangen, J. Zhu and C.-F. Ni
    in Advanced Computational Infrastructures for Parallel and Distributed Adaptive Applications, Edited by X. L. M. Parashar, John Wiley & Sons, Inc., chapter 3, pp. 29—43, 2010
16. On the Construction of Preconditioners for Systems of Partial Differental Equations
    K.-A. Mardal and R. Winther
    in Efficient preconditioning methods for elliptic partial differential equations, Edited by O. Axelsson and J. Karatson, Bentham Science Publishers, 2011
17. Construction of Preconditioners by Mapping Properties for Systems of Partial Differential Equations
    K.-A. Mardal and R. Winther
    in Efficient preconditioning methods for elliptic partial differential equations, Edited by O. Axelsson and J. Karatson, Bentham Science Publishers, chapter 4, pp. 65—84, 2011

Refereed Proceedings

1. Lattice Boltzmann Method and Turbidity Flow Modeling
   O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
   in MekIT'07 : Fourth National Conference in Computational Mechanics, 2007
2. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
   M. S. Alnaes, K.-A. Mardal and J. Sundnes
   in MekIT-07, Fourth national conference on Computational Mechanics, 2007
3. Benchmark of a Tsunami Run-Up Code
   R. E. Bredesen, H. P. Langtangen and G. K. Pedersen
   in MekIT-07, Fourth national conference on Computational Mechanics, 2007
4. Making Hybrid Tsunami Simulators in a Parallel Software Framework
   X. Cai and H. P. Langtangen
   in Proceedings of the PARA'06 Workshop, 2007
5. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow and Heat Transfer in Sedimentary Basins
   J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
   in MekIT-07, Fourth national conference on Computational Mechanics, 2007
6. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
   L. R. Hellevik, S. K. Dahl and B. H. Skallerud
   in MekIT-07, Fourth national conference on Computational Mechanics, 2007
7. A Case Study in High-Performance Mixed-Language Programming
   H. P. Langtangen
   in Applied Parallel Computing - State of the Art in Scientific Computing (PARA'06), 2007
8. Efficient Representation of Computational Meshes
   A. Logg
   in MekIT-07, Fourth national conference on Computational Mechanics, 2007
9. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
   S. K. Dahl, L. R. Hellevik and B. H. Skallerud
   in 8th world Congress on Computational Mechanics/5th European Congress on Computational Methods in Applied sciences and Engineering, Venice, Italy, 2008
10. Lagrangian Particle Dispersion in Turbulent Flow Over a Wall Mounted Obstacle
    D. G. E. Grigoriadis and S. C. Kassinos
    in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
11. Efficient Simulations of Wall Bounded Magnetohydrodynamics Flows
    D. G. E. Grigoriadis and S. C. Kassinos
    in 6th GRACN International Congress on Computational Mechanics, 2008
12. Modelling Adverse Pressure-Gradient Boundary Layers Using the Nonlinear V2F Model in Combinationwith a Structure Based Model
    M. Mortensen, B. A. P. Reif and C. A. Langer
    in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
13. Effect of Embedded Defects in Pipelines Subjected to Plastic Strains During Operation
    E. Olsø, E. Berg, K. H. Holthe, B. Nyhus, B. H. Skallerud, C. Thaulow and E. Østby
    in Proceedings of the Eighteenth (2008) International Offshore and Polar Engineering Conference, 2008
14. Modeling Particle Deposition in the Human Lungs
    H. Radhakrishnan and S. C. Kassinos
    in 6th GRACM International Congress on Computational Mechanics, 2008
15. Using LES to Model Turbulent Particle Transport in Lungs
    H. Radhakrishnan and S. C. Kassinos
    in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
16. Multiscale Modeling of the Acoustic Properties of Lung Parenchyma
    M. Siklosi, O. Jensen, R. Tew and A. Logg
    in Modelling of the Respiratory System Biomechanical, Computational and Mathematical Aspects, 2008
17. Space-Time Correlations From a 143 Hot-Wire Rake in High Reynold Number Turbulent Boundary Layer
    M. Tutkun, W. K. George, J. Delville, J. M. Foucaut, S. Coudert and M. Stanislas
    in AIAA Theoretical Fluid Mechanics Conference, 2008
18. Turbulent Effects of Liquid Metal Flow Under Strong Fringing Magnetic Fields
    X. Albets-Chico, D. G. E. Grigoriadis, S. C. Kassinos and B. Knaepen
    in 6th International Symposium on Turbulence and Shear Flow Phenomena, 2009
19. Tracking Pathogenic Biological Agents in Air - a Case Study of the Outbreak of Legionellosis in Norway
    J. M. Blatny, E. M. Fykse, B. A. P. Reif, Ø. Andreassen, J. S. Olsen and V. Waagen
    in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
20. Teaching PhD Students Effective Communication of Scientific Research
    A. M. Bruaset, M. M. Sundet, M. Alley, M. D. Marshall and S. E. Zappe
    in ICERI2009 Proceedings CD, 2009
21. Bioinformatics' Challenges to Computer Science: Bioinformatics Tools and Biomedical Modeling
    M. Cannataro, R. W. dos Santos and J. Sundnes
    in Computational Science - ICCS 2009, 2009
22. A Flexible Stochastic Approach to Constraining Uncertainty in Forward Stratigraphic Models
    S. R. Clark, A. M. Bruaset, T. O. Sømme and T. M. Løseth
    in 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 2009
23. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
    S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
    in Proceedings of MekIT'09, 2009
24. Numerical Simulation of Low-Velocity Impact Loading of Polymeric Materials
    H. Daiyan, F. Grytten, E. Andreassen, O. V. Lyngstad, H. Osnes, R. Gaarder and E. Hinrichsen
    in Proceedings of the 7th European Conference, 2009
25. Consequence Management Challenges After Indoor Dispersion of a Toxic Chemical
    M. Endregård, B. A. P. Reif, T. Vik and O. Busmundrud
    in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
26. Predicting Particle Deposition in the Human Airways With RANS
    H. E. Fossum and B. A. P. Reif
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
27. Extension of the Immersed Boundary Method for Liquid-Metal Magnetohydrodynamics
    D. G. E. Grigoriadis and S. C. Kassinos
    in Immersed Boundary Methods: Current status and Future Research Directions, 2009
28. On the Performance of an Algebraic Multigrid Preconditioner for the Pressure Equation With Highly Discontinuous Media
    J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
    in Proceedings of MekIT'09, 2009
29. On Material Modelling of Umbilical Vein
    P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
    in MekIT'09: Fifth National Conference on Computational Mechanics Trondheim 26-27 May 2009, 2009
30. Evolution of Intracellular Ca2+ Waves From About 10,000 RyR Clusters: Towards Solving a Computationally Daunting Task
    P. Li, W. Wei, X. Cai, C. Soeller, M. Cannell and A. V. Holden
    in Proceedings of Fifth International Conference on Functional Imaging and Modeling of the Heart, 2009
31. Effect of Tonsilar Position on Cerebrospinal Fluid Flow in the Spinal Subarachnoid Space Studied With Computational Fluid Dynamics
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    in Proceedings of the ASNR 47th annual meeting, May 16-21, Vancouver, BC, Canada, 2009
32. Mathematical Based Imaging of Regional Ischemia
    O. M. Lysaker, B. F. Nielsen, P. Grøttum, K. H. Haugaa, J. G. Fjeld and A. Abildgaard
    in World Congress on Medical Physics and Biomedical Engineering, 2009
33. Subject Specific Finite Element Analysis of Callus Distraction – a Preliminary Study
    S. H. Pettersen, A. Aamodt, O. A. Foss and B. H. Skallerud
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
34. Using LES to Model Turbulent Particle Transport in Human Lungs
    H. Radhakrishnan and S. C. Kassinos
    in Proceedings of the 6th International Symposium on Turbulence and Shear Flow Phenomena (TSFP6), 2009
35. CFD Modeling of Turbulent Flow and Particle Deposition in Human Lungs
    H. Radhakrishnan and S. C. Kassinos
    in Conference Proceedings of the International Conference of IEEE Engineering in Medicine and Biology Society (2009), 2009
36. A Two Dimensional Model of Coupled Electromechanics in Cardiac Tissue
    B. M. Rocha, B. Lino, R. W. dos Santos, E. M. Toledo, L. P. S. Barra and J. Sundnes
    in Proceedings of the World Congress on Medical Physics and Biomedical Engineering, 2009
37. Simulating Heart Valve Dynamics in FEniCS
    K. Selim and A. Logg
    in MekIT'09, 2009
38. Proper Orthogonal Decomposition of Velocity and Scalar Fields in Shear Generated Turbulence
    M. Tutkun, B. A. P. Reif, P. B. V. Johansson and J. Werne
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
39. An Adaptive Sub-Sampling Method for In-Memory Compression of Scientific Data
    D. Unat, T. H. III and S. Baden
    in Data Compression Conference, 2009
40. Implementing a k - ε Turbulence Model in the FEniCS Finite Element Programming Environment
    K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
    in MekIT'09, 2009
41. Numerical Modeling of Aerosol Dispersion Inside a Rotating Aerosol Chamber
    M. Vartdal and B. A. P. Reif
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
42. Large Eddy Simulations of the Evaporation From a Liquid Pool Beneath a Turbulent Air Flow
    T. Vik and B. A. P. Reif
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
43. CFD Simulations of the Evaporation From a Liquid Pool in a Turbulent Flow
    T. Vik, B. A. P. Reif and M. Endregård
    in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
44. Using Cython to Speed Up Numerical Python Programs
    I. Wilbers, H. P. Langtangen and Å. Ødegård
    in Proceedings of MekIT'09, 2009
45. Unsteady RANS Modelling of Pollutant Dispersion in an Idealized Urban Area
    E. M. M. Wingstedt and B. A. P. Reif
    in MekIT´09. Fifth national conference on Computational Mechanics, 2009
46. Numerical Analysis of a Dual-Sediment Transport Model Applied to Lake Okeechobee, Florida
    S. R. Clark, W. Wei and X. Cai
    in Proceedings of the 2010 Ninth International Symposium on Parallel and Distributed Computing, 2010
47. Control of Ca Release Synchrony by Action Potential Configuration in Murine Cardiomyocytes
    J. E. Hake, G. F. Jølle, H. K. Mørk, I. Sjaastad, O. M. Sejersted, W. E. Louch and G. T. Lines
    in Biophysical Journal, 2010
48. A Note on Discontinuous Rate Functions for the Gate Variables in Mathematical Models of Cardiac Cells
    M. Hanslien, N. Holden and J. Sundnes
    in Proceedings of the International Conference on Computational Science, ICCS, 2010
49. FSI Simulation of the Mitral Valve With Contact and Active Anisotropic Material Models
    L. R. Hellevik, M. Astorino, P. Moireau, V. E. Prot, B. H. Skallerud and J. F. Gerbeau
    in 6th World Congress of Biomechanics, 2010
50. Transition to Turbulence in the Wake of a Confined Circular Cylinder
    N. Kanaris, X. Albets-Chico and S. C. Kassinos
    in Proceedings of the 8th International ERCOFTAC Symposium on Engineering Turbulence Models and Measurements (ETMM8), 2010
51. A Reference Solution for the Lorenz System on [0, 1000]
    B. Kehlet and A. Logg
    in AIP Conference Proceedings, 2010
52. Initial Study on Material Modeling of Umbilical Veins in Fetal Sheep
    P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
    in 6th World Congress of Biomechanics, 2010
53. Source-to-Source Optimization of CUDA C for GPU-Accelerated Cardiac Cell Modeling
    F. V. Lionetti, A. D. McCulloch and S. Baden
    in The Sixteenth International Conference on Parallel Computing, EuroPar '10, Ischia, Italy, Aug 31-Sept 3, 2010, 2010
54. Building Flexible User Interfaces for Solving PDEs
    A. Logg and G. N. Wells
    in AIP Conference Proceedings, 2010
55. The Spectral Element Method Used to Assess the Quality of a Global C¹ Map.
    A. E. Løvgren, Y. Maday and E. M. Rønquist
    in Spectral and High Order Methods for Partial Differential Equations. Selected papers from the ICOSAHOM '09 conference, June 22-26, Trondheim, Norway, 2010
56. The Reduced Basis Element Method: Offline-Online Decomposition in the Nonconforming, Nonaffine Case.
    A. E. Løvgren, Y. Maday and E. M. Rønquist
    in Spectral and High Order Methods for Partial Differential Equations. Selected papers from the ICOSAHOM '09 conference, June 22-26, Trondheim, Norway, 2010
57. Towards an Implementation of Nitsche's Method on Overlapping Meshes in 3D
    A. Massing, M. G. Larson and A. Logg
    in AIP Conference Proceedings, 2010
58. The Development of a New Computational Model for the Electromechanics of the Human Myocyte
    B. L. d. Oliveira, J. Sundnes and R. W. dos Santos
    in Proceedings of the 32nd International Conference of the IEEE EMBS, 2010
59. Numerical Modeling of Turbulent Airflow and Particle Deposition in a Bifurcating Airway Model
    H. Radhakrishnan and S. C. Kassinos
    in World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, 2010
60. CFD Analysis of Turbulent Flow and Particle Deposition in a Symmetrically Bifurcating Human Airway Model
    H. Radhakrishnan and S. C. Kassinos
    in 6th World Congress on Biomechanics, 2010
61. Computation of Turbulent Flow for Some Benchmark Cases Using the ASBM RANS Model
    H. Radhakrishnan and S. C. Kassinos
    in Proceedings of the 8th International ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2010
62. Exploring Automated Adaptivity and Error Control
    M. E. Rognes and A. Logg
    in AIP Conference Proceedings, 2010
63. Ductile Fracture Analysis of Plates and Shells With Embedded Defects
    B. H. Skallerud, B. K. Hauge, E. Berg, K. H. Holthe and E. Olsø
    in 18. European Conference on Fracture, Dresden, 2010
64. CSF Flow in Chiari I and Syringomyelia - From the Perspective of Fluid Dynamics
    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
    in The Neuroradiology Journal, 2010
65. CSF Flow in Chiari I and Syringomyelia - From the Perspective of Fluid Dynamics
    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
    in Proceedings of the XIX Symposium Neuroradiologicum, Bologna, Italy, 2010
66. Simplified Mathematical Models of Defibrillation
    A. Tveito, G. T. Lines, M. M. Maleckar and O. Skavhaug
    in Conference Abstracts, VPH 2010, 2010
67. Structure Dimensionality Tensors for the Description of Turbulent Passive Scalar Fields
    X.Albets-Chico, D. G. E. Grigoriadis, V. Akylas and S. C. Kassinos
    in Proceedings of the 8th International ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2010
68. Post-Processing of Marginally Resolved Spectral Element Data
    C. E. Wasberg
    in Spectral and High Order Methods for Partial Differential Equations, 2011

Proceedings without referee

1. Trends in Computational Mechanics Software
   H. P. Langtangen and A. Logg
   in 21st Nordic Seminar on Computational Mechanics, 21st Nordic Seminar on Computational Mechanics, 2008
2. An Overview of the FEniCS Project
   A. Logg
   in 21st Nordic Seminar on Computational Mechanics, 2008
3. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
   A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
   in 21st Nordic Seminar on Computational Mechanics, 2008
4. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
   O. C. Myklebust, S. Hentschel and K.-A. Mardal
   in 21st Nordic Seminar on Computational Mechanics, 2008
5. Collaborative Computational Frameworks and the Growth Problem
   H. Narayanan, K. Garikipati and A. Logg
   in The mathematics of growth and remodelling of soft biological tissues, 2008
6. Automated Computational Modelling for Solid Mechanics
   K. B. Oelgaard, G. N. Wells and A. Logg
   in IUTAM Symposium on Theoretical, Modelling and Computational Aspects of Inelastic Media, 2008
7. Mitral Valve Finite Element Analysis Using Human Uniaxial Tensile Data
   V. E. Prot, B. H. Skallerud and G. A. Holzapfel
   in 8th world congress on computational mechanics, 2008
8. Solid Versus Membrane Finite Elements in Analysis of the Mitral Valve: a Case Study
   V. E. Prot and B. H. Skallerud
   in 6th International Conference on Computation of Shell & Spatial Structures, Ithaca, N.Y., 2008
9. On the Biomechanical Analysis of Bruises
   B. H. Skallerud, A. Winnem, L. L. Randeberg and L. O. Svaasand
   in 21st Nordic Seminar on Computational Mechanics, 2008
10. Two-Point Cross-Spectral and POD Analysis of High Reynold Number Zero Pressure Gradient Turbulent Boundary Layer
    M. Tutkun, W. K. George, J. M. Foucaut, S. Coudert, M. Stanislas and J. Delville
    in Bulletin of American Physical Society, 61th Annual meeting of the APS Division of fluid dynamics, 2008
11. Measuring Spectra With Burst-Mode LDA
    C. Velte, W. K. George, M. Tutkun and B. Frohnapfel
    in Bulletin of the American Physical Society, 61th Annual meeting of the APS Division of fluid dynamics, 2008
12. Rapid Pliocene Rollback of the Tonga-Kermadec Trench Caused by Differential Kinematic Plate Motion
    S. R. Clark
    in Geophysical Research Abstracts, 6th EGU General Assembly, Vienna 2009, 2009
13. GPU Accelerated Solvers for ODEs Describing Cardiac Membrane Equations
    F. V. Lionetti, A. D. McCulloch and S. Baden
    in Proceeding of the GPU technology Conference, 2009
14. GPU Accelerated Electrophysiology Simulations
    F. V. Lionetti, A. D. McCulloch and S. Baden
    in Proceedings of the 2009 ACM/IEEE Conference on supercomputing (SC 2009), 2009
15. Uncertainty Analysis of the Mechanics of the Heart
    H. Osnes, S. R. Clark and J. Sundnes
    in Proceedings of the Twenty Second Nordic Seminar on Computational Mechanics, 2009
16. Python for Scientific Computing at SIAM CSE 2009
    F. Perez, H. P. Langtangen and R. LeVeque
    in SIAM News, 2009
17. Simulation and Visualization of the Early Visual System Using PyNEST and ConnPlotter
    H. E. Plesser, K. Austvoll and E. Nordlie
    in Scandinavian Journal of Vision Science, 2009
18. Specification and Generation of Structured Neuronal Network Models With the NEST Topology Module
    H. E. Plesser and K. Austvoll
    in Eighteenth Annual Computational Neuroscience Meeting, 2009
19. Concise and Informative Diagrams of Neuronal Network Models: a Proposal
    H. E. Plesser, E. Nordlie and M.-O. Gewaltig
    in Neuroscience Meeting Planner, 2009
20. Alternative Elasticity Modeling Approaches for Mitral Valve Analysis: Consequences for Stress and Deformation Prediction
    B. H. Skallerud and V. E. Prot
    in Proceeding of the 22nd Nordic Seminar on Computational Mechanics, 2009
21. Tissue Fiber Families in the Mitral Valve - Constitutive Modelling Numerical Analysis and Potential Clinical Application
    B. H. Skallerud
    in Proceeding of the 22nd Nordic Seminar on Computational Mechanics, 2009
22. Biomedical and Bioinformatics Challenges to Computer Science
    M. Cannataro, R. W. dos Santos and J. Sundnes
    in Proceedings of the International Conference on Computational Science, ICCS,, 2010
23. Geodynamic Models Assist in Determining the South Loyalty Basin's Slab Location and Its Implications for Regional Topography
    S. R. Clark
    in Geophysical Research Abstracts, 2010
24. Experimental and Computational Investigation of Viscoelasticity of Native and Engineered Ligament and Tendon
    J. Ma, H. Narayanan, K. Garikipati, K. Grosh and E. M. Arruda
    in Cellular, Molecular and Tissue Mechanics, 2010
25. Modeling Pulsatile Flow in an Aneurystic Carotid Artery
    H. Radhakrishnan and S. C. Kassinos
    in Proceedings of the 8th Euromech Fluid Mechanics Conference, 2010
26. Automatic Calibration of Depositional Models
    A. Schroll
    in Book of Abstracts, Scientific Computing Seminar, 2010
27. On High-Resolution Shock Simulations - Breaking the Course of Godunov's Theorem
    A. Schroll
    in Book of Abstracts, Cut Cell Methods for Atmosphere and Ocean Modeling, 2010
28. A Strong Coupling FSI Scheme for Simulating BMHV Dynamics
    S. Annerel, J. Degroote, T. Claessens, S. Dahl, B. Skallerud, L. R. Hellevik, P. V. Ransbeeck, P. Segers, P. Verdonck and J. Vierendeels
    in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
29. Modeling the Dispersion and Transport of Aerosols Emitted From Industrial Facility During 2005 and 2008 Outbreaks of Legionnaire's Disease in Norway
    H. E. Fossum, M. Tutkun, B. A. P. Reif and Ø. Andreassen
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
30. Flow Patterns and Aerosol Dispersion Inside an Aerosol Test Chamber
    H. E. Fossum, B. A. P. Reif and G. Skogan
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
31. Verification of Markovian Properties of Turbulent Boundary Layer at High Reynolds Number
    M. Fredbo and M. Tutkun
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
32. A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding
    T. Gillberg
    in MODSIM2011, 19th International Congress on Modelling and Simulation, 2011
33. A Biomechanical Model for Human Umbilical Veins and Wharton's Jelly
    P. R. Leinan, P. Victorien, C. N. v. d. Broek, T. Kiserud, B. Skallerud, L. R. Hellevik and F. N. v. d. Vosse
    in 8th International Conference on Computational Fluid Dynamics in the Oil & Gas, Metallurgical and Process Industries, 2011
34. Cerebrospinal Fluid Flow Characteristics at Double Heart Rate
    S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
    in Neuroradiology, 53 (Suppl. 1), S33, 35th European Soc of Neuroradiology ann. meeting, Antwerpen, Belgium, 2011
35. Cyclic Cerebrospinal Fluid Flow (I): Towards the Understanding of Cerebrospinal Fluid Flow Dynamics in Chiari I Malformation
    S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland, H. P. Langtangen and K.-H. Støverud
    in ASNR 49th Annual Meeting & the Foundation of the ASNR Symposium, June 4 - 9, 2011., 2011
36. CBC.RANS - a New Flexible, Programmable Software Framework for Computational Fluid Dynamics
    M. Mortensen, H. P. Langtangen and J. Myhre
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
37. The Effect of Varying Cross-Sectional Areas on Cerebrospinal Fluid Flow and Pressure in the Cervical Spine
    K.-H. Støverud, K.-A. Mardal, H. P. Langtangen and V. Haughton
    in MekIT'11, 2011
38. Mint: Realizing CUDA Performance in 3D Stencil Methods With Annotated C
    D. Unat, X. Cai and S. Baden
    in Proceedings of the 25th International Conference on Supercomputing (ICS'11), 2011
39. Auto-Optimization of a Feature Selection Algorithm
    D. Unat, H. S. Kim, J. P. Schulze and S. Baden
    in Proceedings of the 4th Workshop on Emerging Applications and Many-core Architecture, 2011
40. On the Complexity of Stationary Flow in Patient–Specific Aneurysms
    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
    in MekIT'11 Sixth national conference on Computational Mechanics, 2011
41. Direct Numerical Simulation of Transitional Flow in a Patient-Specific MCA Aneurysm
    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
    in Proceedings of the ASME 2011 Summer Bioengineering Conference, 2011
42. Investigations of Transistional Flows Using Image Based Hemodynamics
    K. Valen-Sendstad, M. Mortensen, K.-A. Mardal, B. A. P. Reif and H. P. Langtangen
    in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
43. Large Eddy Simulations of the Release of Liquified Chlorine From a Pressurized Tank Into the Atmosphere
    T. Vik and B. A. P. Reif
    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
44. FEniCS Framework in Geoscientific Applications
    L. Vynnytska and S. R. Clark
    in MODSIM 2011, 2011
45. An OpenMP-Enabled Parallel Simulator for Particle Transport in Fluid Flows
    W. Wei, O. Al-Khayat and X. Cai
    in Proceedings of the 2011 International Conference on Computational Science, 2011

Technical Reports

1. Mohr-Coulomb Stress in the Code for Deformation and Heat Flow in Sedimentary Basins
   H. Osnes
   Simula Research Laboratory, 2007
2. Finding the Set of Measurements Necessary to Reveal the State of a Static System
   R. Lorentzen
   Simula Research Laboratory, 2011

Manuals

1. UFC Specification and User Manual 1.0
   M. S. Alnaes, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
   2007
2. DOLFIN User Manual
   A. Logg and G. N. Wells
   2007
3. FFC User Manual
   A. Logg
   2007
4. UFL Specification and User Manual
   M. S. Alnaes and A. Logg
   2009

Theses

1. Modelling and Numerical Analysis of the Porcine and Human Mitral Apparatus
   V. E. Prot
   Ph.D. Thesis, Department of Structural Engineering, Norwegian University of Science and Technology, 2008
2. Structure of Zero Pressure Gradient High Reynolds Number Turbulent Boundary Layers
   M. Tutkun
   Ph.D. Thesis, Chalmers University of Technology, 2008
3. A Compiler Framework for Automatic Linearization and Efficient Discretization of Nonlinear Partial Differential Equations
   M. S. Alnaes
   Ph.D. Thesis, University of Oslo, 2009
4. Calcium Dynamics in Signaling Micro Domains of Cardiac Myocytes - a Modelling Study
   J. E. Hake
   Ph.D. Thesis, University of Oslo, 2009
5. Subject Specific Finite Element Analysis of Bone for Evaluation of the Healing of a Leg Lengthening and Evaluation of Femoral Stem Design
   S. H. Pettersen
   Ph.D. Thesis, Norwegian University of Science and Technology, 2009
6. Mixed Finite Element Methods With Applications to Viscoelasticity and Gels
   M. E. Rognes
   Ph.D. Thesis, University of Oslo, 2009
7. Contributions to Simplifying Bidomain Simulations
   T. S. Ruud
   Ph.D. Thesis, Department of Informatics, University of Oslo, 2009
8. Mesoscale Modeling of Particle Flow
   O. Al-Khayat
   Ph.D. Thesis, Department of Informatics, University of Oslo, 2010
9. Numerical Methods for Basin-Scale Poroelastic Modelling
   J. B. Haga
   Ph.D. Thesis, University of Oslo, 2011
10. Adaptive Finite Element Methods for Fluid–Structure Interaction and Incompressible Flow
    K. Selim
    Ph.D. Thesis, University of Oslo, 2011
11. Computational Cerebral Hemodynamics
    K. Valen-Sendstad
    Ph.D. Thesis, Faculty of Mathematics and Natural Sciences, University of Oslo, 2011

Talks

1. Lattice Boltzmann Method and Turbidity Flow Modeling
   O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
   MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
2. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
   M. S. Alnaes, K.-A. Mardal and J. Sundnes
   MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
3. Computing the Mechanics of the Heart
   M. S. Alnaes
   CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
4. Overcoming Obstacles With Graph Based Programming Models
   S. Baden
   CBC Workshop on Biomedical Computing, Simula, 2007
5. A Data Centric View of Scientific Computing
   S. Baden
   CBC Workshop on Biomedical Computing, Simula, 2007
6. A Sustainable Software Ecosystem
   S. Baden
   CBC Workshop on High-Performance and Parallel Computing, October 24, 2007
7. Benchmark of a Tsunami Run-Up Code
   R. E. Bredesen, G. K. Pedersen and H. P. Langtangen
   MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
8. On a Future Software Platform for Demanding Multi-Scale and Multi-Physics Problems
   X. Cai and H. P. Langtangen
   SIAM CSE07 Conference, Costa Mesa, February 19-23, 2007
9. Simulating Tsunami Propagation on Parallel Computers Using a Hybrid Software Framework
   X. Cai
   Guest lecture, University of Stuttgart, March 12, 2007
10. On Building Parallel Algorithms and Software for Hydraulic Tomography
    X. Cai
    SIAM GS2007 Conference, Santa Fe, New Mexico, March 19-22, 2007
11. Building Hybrid Parallel PDE Software by Domain Decomposition and Object-Oriented Programming
    X. Cai
    ICCM 2007 Conference, Hiroshima, Japan, April 4-6, 2007
12. Making Parallel PDE Software by Object-Oriented Programming
    X. Cai
    Guest lecture, Hohai University, China, May 17, 2007
13. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
    S. K. Dahl
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
14. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
    S. K. Dahl
    CBC seminar on Biomechanics, Trondheim, November 15, 2007
15. Optimal Coupling in a Multiscale Model
    H. Enger, J. Feder, A. Malthe-Sørenssen and H. P. Langtangen
    Kongsberg Seminar on geology, Kongsberg, Norway, 2007
16. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow, and Heat Transport in Porous Geological Formations
    J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
17. Stochastic Binding of Ca2+ Ions in the Dyadic Cleft Continuous Vs Random Walk Description of Diffusion
    J. E. Hake and G. T. Lines
    ICIAM 07: 6th International Congress on Industrial and Applied Mathematics, ZÜrich, July 16-20, 2007
18. Stochastic Binding of Ca2+ Ions in the Dyadic Cleft Continuous Vs Random Walk Description of Diffusion
    J. E. Hake and G. T. Lines
    5th Annual CHFR Symposium, 2007
19. Subcellular Calsium Handling
    J. E. Hake
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
20. Stable Numerical Methods for Cell Models Used in Simulations of Ventricular Defibrillation
    M. Hanslien
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
21. A Pseudospectral Fourier Method Applied to an Incompressible Two-Fluid Model
    H. Holmås, D. Clamond and H. P. Langtangen
    International Conference on Multiphase Flow (ICMF), Leipzig, Germany, 2007
22. Computational Modeling of Huge Tsunamis From Asteroid Impacts
    H. P. Langtangen
    International conference on Computational Science (ICCS'07), Beijing, China, 2007
23. Multiscale Modeling of Turbulent Flow
    M. G. Larson
    CBC Workshop on Biomedical Computing, Simula, 2007
24. Adaptivity and Error Estimation for Multiphysics Problems
    M. G. Larson
    CBC Workshop on Biomedical Computing, Simula, 2007
25. Simulations and Experiments With the BSCC Mechanical Heart Valve Prosthesis
    P. R. Leinan
    CBC Workshop on Biomechanics, Trondheim, November 15, 2007
26. Cardiac Computing at Simula
    G. T. Lines
    CBC Workshop on Biomedical Computing, Simula, 2007
27. Overview of the Cardiac Computations Project
    G. T. Lines
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
28. Requirements on PDE Solver Componentsfor Multiphysics Simulation
    M. Ljungberg
    Minisymposium talk at the SIAM Conference on Computational Science and Engineering, Miami, USA, 2007
29. Efficient Representation of Computational Meshes
    A. Logg
    MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2007
30. Activities at Simula: FEniCS and the Center for Biomedical Computing
    A. Logg
    Computational and Applied Mathematics Seminar, Chalmers University of Technology, Göteborg, September 26, 2007
31. Automated Solution of Differential Equations
    A. Logg
    ICIAM 07: 6th International Congress on Industrial and Applied Mathematics, ZÜrich, July 16-20, 2007
32. Finite Element Code Generation: Simplicity, Generality, Efficiency
    A. Logg
    Software Issues in Computational Science and Engineering (SCSE), Uppsala, August 11, 2007
33. Finite Element Code Generation: Simplicity, Generality, Efficiency
    A. Logg
    Software Issues in Computational Science and Engineering (SCSE), Uppsala, August 11, 2007
34. PDE Methods for Identifying Ischemic Heart Disease
    O. M. Lysaker and B. F. Nielsen
    6th International Congress on Industrial and Applied Mathematics, 2007
35. Reduced Basis Modeling of Complex Flow Systems
    A. E. Løvgren, E. M. Rønquist and Y. Maday
    Modelling and Scientific Computing group at EPFL, Switzerland, November, 2007
36. Simulation of Atrial Arrhytmias
    M. MacLachlan
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
37. Finite Elements With Symbolic Computations and Code Generation
    K.-A. Mardal and M. S. Alnaes
    Software Issues in Computational Science and Engineering (SCSE), Uppsala, August 11, 2007
38. Computation of Hemodynamics in the Circle of Willis
    K.-A. Mardal
    Modelling and Computation of Biomedical Processess Workshop, Simula Oslo, June 7-14, 2007
39. Multi-Scale Modeling of Cardiac Electromechanical Interactions
    A. D. McCulloch
    CBC Workshop on Biomedical Computing, Simula, 2007
40. Can Inverse Problems Tell You the Condition of Your Heart?
    B. F. Nielsen, O. M. Lysaker and M. G. Larson
    ICIAM 07: 6th International Congress on Industrial and Applied Mathematics, ZÜrich, July 16-20, 2007
41. Inverse Solutions for Assesing Myocardial Ischemia
    B. F. Nielsen
    CBC Seminar on Electrophysiology Modeling, Simula, September 6, 2007
42. The G3 F2PY for Connection Python and Fortran 90 Programs
    P. Peterson
    Software Issues in Computational Science and Engineering (SCSE), Uppsala, August 11, 2007
43. Solid Finite Element Analysis of the Mitral Valve
    V. E. Prot
    CBC Workshop on Biomechanics, Trondheim, November 15, 2007
44. Effects on Connective Tissue Pathologies on Mitral Valve Response
    V. E. Prot, B. H. Skallerud and G. A. Holzapfel
    Conference on Modeling of heterogeneous materials with application in construction and biomedical engineering, Prague, 2007
45. Multiscale Modeling of the Acoustic Properties Og Lung Parenchyma
    M. Siklosi
    CBC Workshop on Biomedical Computing, Simula, 2007
46. Modeling of the Mitral Valve in the Heart
    B. H. Skallerud
    CBC Workshop on Biomedical Computing, Simula, 2007
47. Using Mathematical Models to Test Physiological Hypotheses
    J. Sundnes
    Annual meeting of the Scandinavian Physiological Society, 2007
48. Computational Techniques for Heart Muscle Mechanics
    J. Sundnes
    ICIAM 07: 6th International Congress on Industrial and Applied Mathematics, ZÜrich, July 16-20, 2007
49. Software Components for Biomedical Flows
    J. Sundnes
    National seminar on medical technology, NFA (Norsk forening for automatisering), 2007
50. A Finite Element Model of Cardiac Electrophysiology and Mechanics
    J. Sundnes, M. S. Alnaes and K.-A. Mardal
    VII International conference on computational plasticity, 2007
51. Challenges With Distributing PyCC Environment
    Å. Ødegård
    CBC Workshop on Biomedical Computing, Simula, 2007
52. Particle-Based Methods in the Modelling of Turbidity Currents and Turbidites
    O. Al-Khayat, T. M. Løseth, A. M. Bruaset and H. P. Langtangen
    33rd International Geological Congress, Oslo, 2008
53. Numerical Modeling of Turbidity Flow With the Lattice Boltzmann Method
    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
    Computational Geoscience workshop, 2008
54. A Coupled Lattice Boltzmann Model for a Turbulent Sand-Laden Fluid Flow
    O. Al-Khayat, H. P. Langtangen and A. M. Bruaset
    DSFD conference, Brazil, 2008
55. SFC - the SyFi Form Compiler
    M. S. Alnaes and K.-A. Mardal
    International FEniCS'08 Workshop, March 5-7, Baton Rouge, 2008
56. Surface and Embedded Crack in the Offshore Pipelines Subjected to Plastic Strains
    E. Berg, B. H. Skallerud and K. H. Holthe
    6th international Conference on Computation of Shell and Spatial Structures, 2008
57. Parallel Computing; Why & How?
    X. Cai
    Winter School on Parallel Computing, January 20-25, Geilo, Norway, 2008
58. High-Performance Computing on Distributed-Memory Architecture
    X. Cai
    Winter School on Parallel Computing, January 20-25, Geilo, Norway, 2008
59. Simulation of Tsunami Propagation
    X. Cai
    2nd eScience Meeting, January 21-22, Geilo, Norway, 2008
60. Use of Advanced Computing in Tomographic Surveys
    X. Cai
    PARA 2008, Trondheim, May 13-16, 2008
61. Resource-Efficient Simulation of Tsunami Wave Propagation on Parallel Computers
    X. Cai
    2nd Internationsal Symposium for Integrated Predictive Simulation System for Earthequake and Tsunami Disaster, Tokyo, October 21-22, 2008
62. Geodynamics: the Physics and Mathematics of Terrestrial and Extra-Terrestrial Processes
    S. R. Clark
    CBC Annual Meeting, November 5-6, 2008
63. Time-Dependant Evolution of Subduction Zones
    S. R. Clark
    Invited talk given at Ludwig-Maximilians University (LMU), Munich, Germany., 2008
64. Simulating and Visualising the Earth As a Dynamic System
    S. R. Clark
    Lecture given to Valler High School Teachers, 2008
65. Handling Uncertainty in Numerical Models of Sedimentary Deposition: a Stochastic Approach
    S. R. Clark, A. M. Bruaset and T. M. Løseth
    33rd International Geological Congress, Oslo, 2008
66. Slabs in the Mantle - Dynamic Topography and Mantle Rheology in the South-Western Pacific
    S. R. Clark, M. Gurnis and M. Dietmar
    33rd International Geological Congress, Oslo, 2008
67. Lithospheric Modelling: Research Directions at Simula
    S. R. Clark
    GeoMath08, workshop, Santa Fe, New Mexico, 2008
68. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
    S. K. Dahl, L. R. Hellevik and B. H. Skallerud
    8th World Congress on Computational Mechanics (WCCM8)/5th European Congress on Computational Methods in Applied Sciences and Engineeering (ECCOMAS 2008), Venice, Italy, 2008
69. Parallel Computations and the Finite Element Method
    J. B. Haga
    SINTEF Applied Mathematics group, 2008
70. Modelling the Mesoscopic Length Scale of EC Coupling: the Diadic Cleft
    J. E. Hake and G. T. Lines
    European Conference on Mathematical and Theoretical Biology, 2008
71. Imaging the Craniovertebral Juction
    V. Haughton
    35th Annual Course on Computed Tomography and Magnetic Resonance Imaging of the Brain Rush-Presbyterian, Chicago, 2008
72. The Chiari I Malformation From the Perspective of Hans Chiari
    V. Haughton
    Chiari Conference, Northwest Research and Education Institute, 2008
73. The Chiari I Malformation From the Perspective of Modern Imaging
    V. Haughton
    Chiari Conference, Northwest Research and Education Institute, 2008
74. Wave Propagation in the Human Fetal Ductus Venosus-Umbilical Vein Bifurcation
    L. R. Hellevik
    Reproductive Bioengineering, Wenns im Piztal, Austria, 2008
75. Numerical Python
    H. P. Langtangen, O. Al-Khayat and A. M. Bruaset
    Four day course at the University of Erlangen, 2008
76. Fluid Structure Interaction Modeling of Pulsations of the Fetal Umbilical Cord
    P. R. Leinan
    8th World Congress on Computational Mechanics, Venice, 2008
77. Chiari Malformation - the Problem and a Mathematical Approach
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    Vindern Medical Center, Oslo, December 8, 2008
78. Cerebrospinal Fluid Flow in Normal and Chiari Subjects
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    CBC Workshop on Current Issues and Activities in the Robust Flow Solvers Project, Simula, December 16, 2008
79. Cerebrospinal Fluid Flow Simulations - Normal Subjects and Patients With Chiari I Malformation
    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
    CBC Workshop on experimental, analytical and numerical investigations of blood flow, Simula, October 31, 2008
80. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
    S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
    CBC Workshop on Simulation of Biomedical Flow Problems, Simula, June 25, 2008
81. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
    S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
    CBC Workshop on High-Performance Computing and Biomedical Flows, Simula, May 19-21, 2008
82. The FEniCS Project
    A. Logg
    Workshop on Data Structures for Finite Element and Finite Volume Computations, Freie Universität, Berlin, February 29, 2008
83. A Symbolic Engine for Finite Element Exterior Calculus
    A. Logg
    Automating the development of scientific computing software, Louisiana State University, 2008
84. Just-in-Time Compilation of Finite Element Variational Forms
    A. Logg
    Finite Element Circus and Rodeo, Louisiana State University, Baton Rogue, March 7, 2008
85. FSI Development at CBC
    A. Logg
    Workshop on FSI for Biomedical Applications, Trondheim, September 08, 2008
86. FEniCS Tutorial
    A. Logg
    CBC Annual Meeting, November 5-6, 2008
87. A Symbolic Engine for Finite Element Exterior Calculus
    A. Logg
    European Finite Element Fair, Chalmers, Göteborg, May 30, 2008
88. Computer Simulations for Identifying Ischemic Heart Disease; a Validation Study
    O. M. Lysaker, B. F. Nielsen, P. Grøttum, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
    BBG-MedViz seminar at the Department of Mathematics, University of Bergen, 2008
89. Theoretical and Practical Aspects of the Inverse Problem of Electrocardiography
    O. M. Lysaker, B. F. Nielsen, P. Grøttum, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
    Fourth International Conference on Inverse Problems: Modeling and Simulation, Turkey, 2008
90. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
    A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
    21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
91. Scientific Computing at Simula
    K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
    Workshop on Cerebral Aneurysms and Subarachnoidal Hemorrhage, January 24-26, Tromsø, 2008
92. Two Steps Towards Automating Efficient Solution of Inverse Problems
    K.-A. Mardal, B. F. Nielsen and M. S. Alnaes
    International FEniCS'08 Workshop, March 5-7, Baton Rouge, 2008
93. Blood Flow Computations at Simula
    K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
    Medical Physics, University of Wisconsin, March 11, 2008
94. Hemodynamics in the Circle of Willis
    K.-A. Mardal
    Institute for Computational and Applied Mathematics, Muenster, November 18, Germany, 2008
95. Seminar: Multi-Scale Modeling of the Heart
    A. D. McCulloch
    MURPA eSeminar, Monash University, Melbourne, Australia, 2008
96. Towards Image-Based Patient-Specific Multi-Scale Modeling of the Failing Heart
    A. D. McCulloch
    2008 SIAM Life Sciences Conference, Session MS35, Montreal, Canada, 2008
97. Multi-Scale Modeling of Cardiac Electromechanics
    A. D. McCulloch
    Biomechanical Engineering Math Seminar, Worchester Polytechnic Institute, 2008
98. Physiome Research in the USA
    A. D. McCulloch
    Invited talk at ICT-BIO, The European Commission, Brussels, 2008
99. Mechanobiology of Normal and Failing Myocardium
    A. D. McCulloch
    The Physiology Department, Oxford University, 2008
100. Emerging Role for Multi-Scale Modeling in the Biomechanical Device Industry
     A. D. McCulloch
     3rd ASME Frontiers in Biomechanical Devices Conference, Irvine, California, USA, 2008
101. Systems Biology and Multi-Scale Modeling of the Heart
     A. D. McCulloch
     University of Washington, Department of Bioengineering, 2008
102. Systems Biology and Multi-Scale Modeling of the Heart
     A. D. McCulloch
     Pacific Biocomputing Symposium, Kona, Hawaii, 2008
103. Systems Biology and Multi-Scale Modeling of the Heart
     A. D. McCulloch
     University of Illinois, Chicago, Department of Physiology and Biophysics, 2008
104. Multi-Scale Modeling of Cardiac Mechanoenergetics
     A. D. McCulloch
     Welcome Trust Physiome Workshop on Multi-scale Modeling of the heart, Auckland, New Zealand, 2008
105. Multi-Scale Modeling of Cardiac Electromechanics
     A. D. McCulloch
     Symposium on Computational Physiology, Experimental Biology 2008, San Diego, 2008
106. Multi-Scale Modeling and Systems Biology of Cardiac Regulatory Mechanisms
     A. D. McCulloch
     MEI International Symposium "Physiome and Systems Biology for Integrated Life Sciences and Predictive Medicine", San Fransisco, 2008
107. Multi-Scale Modeling of the Heart
     A. D. McCulloch
     NCRR P41 Directors, National Library of Medicine, NIH, Bethesda, Maryland, USA, 2008
108. Multi-Scale Modeling of Ventricular Electromechanics
     A. D. McCulloch
     Cardiovascular System Dynamics Society HVIII Conference, St. Louis, USA, 2008
109. Mechanosensing and Mechanotransduction in the Myocardium
     A. D. McCulloch
     Seminar at the Cardiology Department, Academic Hospital Maastricht, The Netherlands, 2008
110. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
     O. C. Myklebust, S. Hentschel and K.-A. Mardal
     21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
111. Toward a Goal-Oriented Error-Controlled Solver for the Incompressible Navier-Stokes Equations
     H. Narayanan
     CBC workshop on Current Issues and Activities in the Robust Flow Solvers Project, Simula, December 16, 2008
112. On the Use of Computer Simulations for Identifying Ischemic Heart Disease; Theoretical and Practical Aspects
     B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
     Workshop on Mathematics in Medicine/Biology, Centre of Mathematics for Applications, University of Oslo, 2008
113. Theoretical and Practical Aspects of the Inverse Problem of Electrocardiography
     B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
     Institut fÜr Mathematik und Wissenschaftliches Rechnen, Karl Franzes Universität in Graz, Austria., 2008
114. The Inverse Problem of Identifying Ischemic Heart Disease
     B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. H. Haugaa
     Annual meeting of European Cardiac Simulation Group, Bologna, Italy, 2008
115. Mitral Valve Finite Element Analysis Using Human Uniaxial Tensile Data
     V. E. Prot
     8th World Congress on Computational Mechanics, Venice, 2008
116. Solid Versus Membrane Finite Elements in Analysis of the Mitral Valve: a Case Study
     V. E. Prot and B. H. Skallerud
     6th International Conference on Computation of Shell & Spatial Structures, 2008
117. Turbulens - Det Siste Uløste Problemet I Klassisk Fysikk
     B. A. P. Reif
     Popular Mathematics (POPMAT), University of Oslo, 2008
118. On Computational Mathematical Modeling
     A. Schroll
     The University of Southern Danmark, 2008
119. Well-Based Calibration of Geological Models
     A. Schroll
     Mathematisches Forschungsinstitut Oberwolfach, 2008
120. Automatic Calibration of Depositional Models: an Inverse Problems Approach
     A. Schroll
     33rd International Geological Congress, Oslo, 2008
121. Stochastic Analysis of Turbulence: N-Scale and N-Point Correlations in Homogeneous an Inhomogeneous Turbulent Flows
     R. Stresing, M. Tutkun, S. LÜck and J. Peinke
     Presented at the iTi Conference on Turbulence III, Bertinoro, Italy, 2008
122. Computational Challenges in Mathematical Models of the Heart
     J. Sundnes
     Norwegian University of Life Sciences, January 30, 2008
123. The Role of Genome and Regulatory Network Architecture Canalization in the Evolution of Multi-Trait Polymorphism and Sympatric Speciation
     K. ten Tusscher
     Centre for Ecological and Evolutionary Synthesis at the University of Oslo, Department of Biology, 2008
124. Evolutionary Biology for Non-Biologists
     K. ten Tusscher
     CBC Annual Meeting, November 5-6, 2008
125. Genome and Gene Regulatory Network Canalization in the Evolution of Polymorhism and Sympatric Speciation
     K. ten Tusscher
     Symposium "Celebrating 30 years of Bioinformatics" at Utrecht University, 2008
126. Large Scale Structures of High Reynold Number Turbulent Boundary Layers
     M. Tutkun
     Workshop on Wall Bounded Shear Flows: Transistion and Turbulence, Cambridge University, Isaac Newton Institute for Mathematical Science, 2008
127. Developing Flow Solver Methodology for Patientspecific Simulation of Hemodynamics
     K. Valen-Sendstad, A. Logg and K.-A. Mardal
     Workshop on Finite Element Methods for Fluids and Fluid-Structure Interaction, June 5, 2008
128. The Unified Form Language
     M. S. Alnaes
     International FEniCS'09 workshop, Simula, June 11-12, 2009
129. Preconditioning in Inverse Problems
     M. Burger and B. F. Nielsen
     Applied Inverse Problems conference, Vienna, Austria, 2009
130. Fluid-Structure Interaction Simulation of Mitral Valve Dynamics in a Subject-Specific Geometry During Diastolic Filling
     S. K. Dahl
     MI-Lab seminar; Cardiac imaging and LV mechanics, Trondheim, Norway, November 10, 2009
131. Fluid Structure Interaction With an User Defined Subroutine
     S. K. Dahl
     Fluent Users Group at SINTEF / NTNU, June 3, 2009
132. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
     S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
133. Predicting Particle Deposition in the Human Airways With RANS
     H. E. Fossum and B. A. P. Reif
     MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, 2009
134. On the Perfermance of an Algebraic Multigrid Preconditioner for the Pressure Equationwith Highly Discontinuous Media
     J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
135. MRI Research and Techniques for CSF Flow
     V. Haughton
     ASAP's Chiari & Syringomyelia Conference: Quest for Understanding, 2009
136. CSF Flow in the Chiari I Malformation Evaluated With PC MR and Computation Flow Design
     V. Haughton
     Nordic Society of Neuroradiology Meeting, 2009
137. Imaging Evaluation of the Chiari I Malformation
     V. Haughton
     Meeting and symposium of the American Syringomyelia Alliance Project, 2009
138. Experience With Merging Mathematics, Numerical Methods, Physics and Programming From Day 1
     H. P. Langtangen
     Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
139. Techniques for Achieving High Performance in Numerical Python Codes
     H. P. Langtangen
     Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
140. Experience With Python in a Major Educational Reform
     H. P. Langtangen
     Minisymposium talk at the SIAM Conference on Computational Science and Engineering, Miami, USA, 2009
141. Modeling and Simulation
     H. P. Langtangen
     Invited talk at a Tekna Labor Union seminar, 2009
142. Python As an Important Tool in a Major Science Education Reform
     H. P. Langtangen
     Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
143. Sex Differences in Intracranial Bifurcation Geometry and Blood Flow Velocity Result in Stronger Hemodynamic Forces Upon the Female Vessel Wall
     H. Lindekleiv and K. Valen-Sendstad
     Nordic Society of Neuroradiology Meeting, 2009
144. Antiarrhythmic Drug Identifaction
     G. T. Lines, A. Tveito and P. Li
     Bidomain Workshop, Graz, Austria, 2009
145. Cerebrospinal Fluid Flow Investigations With Modelling and Simulation
     S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
     The Chiari Institute, New York, January 14, 2009
146. Simulating Normal and Abnormal CSF Flow With Idealized Geometries
     S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
     Seminar on cerebrospinal fluid flow, University of Wisconsin, Madison, January 16, 2009
147. Tonsilar Herniation - How Is the CSF Flow Influenced?
     S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
     Rikshospitalet University Hospital, Oslo, Norway, June 5, 2009
148. GPU Accelerated Electrophysiology Simulations.
     F. V. Lionetti, A. D. McCulloch and S. Baden
     GPU Technology conference, San Jose, California, 2009
149. GPU Accelerated Electrophysiology Simulations
     F. V. Lionetti, A. D. McCulloch and S. Baden
     ACM/IEEE Conference on Supercomputing (SC 2009), 2009
150. FEniCS: Automated Computing
     A. Logg
     Workshop on Computational Fluid Dynamics, Simula Research Laboratory, Oslo, 2009
151. Introduction to FEniCS'09
     A. Logg
     International FEniCS'09 workshop, Simula, June 11-12, 2009
152. Automatic Code Generation and the FEniCS Project
     A. Logg
     Opportunities and Challenges in Computational Geodynamics, Caltech, March 30, 2009
153. Automated Finite Element Discretization
     A. Logg
     Workshop on Compatible and Innovative Discretizations for Partial Differential Equations, Oslo, June 18, 2009
154. Parallel Data Structures and Algorithms in DOLFIN
     A. Logg
     CBC Workshop on High-Performance Computing, Simula, June 16, 2009
155. DOLFIN: Automated Finite Element Computing
     A. Logg
     ENUMATH'09, Uppsala, July 03, 2009
156. Automation of Error Control With Application to FSI
     A. Logg
     AC/DC seminar series, 2009
157. Mathematical Based Imaging of Regional Ischemia
     O. M. Lysaker, B. F. Nielsen, P. Grøttum, K. H. Haugaa, J. G. Fjeld and A. Abildgaard
     World Congress 2009, Medical physics and biomedical engineering, 2009
158. Real-Time Flow Simulation
     A. E. Løvgren, Y. Maday, E. M. Rønquist and S. Deparis
     The Chiari Institute, New York, January 14, 2009
159. Real-Time Computation of CSF Flow
     A. E. Løvgren, Y. Maday, E. M. Rønquist and S. Deparis
     Seminar on cerebrospinal fluid flow, University of Wisconsin, Madison, January 16, 2009
160. The Reduced Basis Element Method: Offline-Online Decomposition in the Nonconforming, Nonaffine Case
     A. E. Løvgren, Y. Maday and E. M. Rønquist
     International Conference on Spectral and High Order Methods (ICOSAHOM), Trondheim, June 22-26, 2009
161. The Spectral Element Method Used to Assess the Quality of a Deformed Mesh
     A. E. Løvgren, Y. Maday and E. M. Rønquist
     International Conference on Spectral and High Order Methods (ICOSAHOM), Trondheim, June 22-26, 2009
162. Stabilized Reduced Basis Approximation of the Navier-Stokes Equations in Deformed Domains
     A. E. Løvgren and S. Deparis
     Workshop on Model Reduction of Parametrized Systems, MÜnster, Germany, September 16-18, 2009
163. Electrotonic Coupling Between Human Atrial Myocytes and Fibroblasts Alters Excitability and Repolarization
     M. M. Maleckar
     GRC Conference - Cardiac Arrhythmia Mechanisms, 2009
164. Computing and Medical Applications at Simula
     K.-A. Mardal, A. Helgeland, S. Hentschel, H. P. Langtangen, A. Logg, S. Linge, A. E. Løvgren and K. Valen-Sendstad
     CBC Workshop on Computational Biology with Norwegian University of Life Sciences, 2009
165. Cerebral Blood Flow
     K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
     Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
166. Patient-Specific Hemodynamics in FEniCS
     K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
     Invited talk at the minisymposium on Computational Vascular and Cardiovascular Mechanics at USNCCM, 2009
167. Patient-Specific Simulations of Stroke and Syringomyelia
     K.-A. Mardal, S. Hentschel, A. Helgeland, H. P. Langtangen, S. Linge, A. E. Løvgren, A. Logg and K. Valen-Sendstad
     Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, Nov 03, 2009
168. CSF Flow Modelling
     K.-A. Mardal, V. Haughton, S. Hentschel, H. P. Langtangen, S. Linge, A. E. Løvgren and K. Valen-Sendstad
     CSR Flow Research Conference at University of Wisconsin, Nov 9, 2009
169. Patient-Specific Hemodynamics in FEniCS
     K.-A. Mardal, A. Logg, S. Hentschel, O. C. Myklebust and K. Valen-Sendstad
     International FEniCS'09 workshop, Simula, June 11-12, 2009
170. Tiny Introduction to Jabref
     A. Massing
     AC/DC seminar series, 2009
171. An Informal Guide to Continuum Mechanics
     H. Narayanan
     AC/DC seminar series, 2009
172. An Informal Guide to Continuum Mechanics, Part II
     H. Narayanan
     AC/DC seminar series, 2009
173. The Inverse Ischemia Problem; Mathematical Models and Validation
     B. F. Nielsen, O. M. Lysaker, P. Grøttum, K. H. Haugaa, J. G. Fjeld and A. Abildgaard
     Applied Inverse Problems conference, Vienna, Austria, 2009
174. An Operator Theoretical Approach to Preconditioning Optimality Systems
     B. F. Nielsen and K.-A. Mardal
     Applied Inverse Problems conference, Vienna, Austria, 2009
175. Recent Contributions to the Inverse Problem of Electrocardiography
     B. F. Nielsen
     Applied Inverse Problems conference, Vienna, Austria, 2009
176. Modelling, Mathematical Properties and Validation of the Inverse Ischemia Problem
     B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, K. H. Haugaa, A. Abildgaard, J. G. Fjeld and M. Burger
     Bidomain Workshop, Graz, Austria, 2009
177. Subject Specific Finite Element Analysis of a Callus Distraction - a Preliminary Study
     S. H. Pettersen, A. Aamodt, O. A. Foss and B. H. Skallerud
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
178. Simulation and Visualization of the Early Early Visual System Using PyNEST and ConnPlotter
     H. E. Plesser, K. Austvoll and E. Nordlie
     Kongsberg Vision Meeting, The Norwegian Association of Optometrists, 2009
179. Mixed Finite Element Methods for Linear Viscoelasticity
     M. E. Rognes
     Compatible and innovative discretizations for PDEs. Algorithms, analysis and implementation. Norwegian Academy of Science and Letters, 2009
180. Efficient Assembly of H(div) and H(curl) Conforming Variational Forms
     M. E. Rognes
     Chalmers University of Technology, 2009
181. Automated Error Control. Current Status and Future Ambitions
     M. E. Rognes
     Simula seminar, 2009
182. Simulating the Heart Valve Dynamics in FEniCS
     K. Selim and A. Logg
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
183. Alternative Elasticity Modeling Approaches for Mitral Valve Analysis: Consequences for Stress and Deformation Prediction
     B. H. Skallerud and V. E. Prot
     22nd Nordic Seminar on Computational Mechanics, Aalborg, Denmark, October 22-23, 2009
184. Tissue Fiber Families in the Mitral Valve - Constitutive Modelling Numerical Analysis and Potensial Clinical Application
     B. H. Skallerud
     22nd Nordic Seminar on Computational Mechanics, Aalborg, Denmark, October 22-23, 2009
185. Computer Modeling of Cardiac Electro-Mechanics - Models and Numerical Methods
     J. Sundnes, S. Wall and H. Osnes
     Cardiac Modeling seminar, Simula Research Laboratory, 2009
186. Multiscale Models of Physiological Systems
     J. Sundnes
     Course "Bioinformatics for molecular biology", University of Oslo, 2009
187. Simulation of Strongly Coupled Electro-Mechanics in an Infarcted Left Ventricle
     J. Sundnes, S. Wall and H. Osnes
     Bidomain Workshop, Graz, Austria, 2009
188. Proper Orthogonal Decomposition of Velocity and Scalar Fields in Shear Generated Turbulence
     M. Tutkun, B. A. P. Reif, P. B. V. Johansson and J. Werne
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
189. Optimizations of Common Scientific Kernels on GPU
     D. Unat and S. Baden
     Early Adopters PhD Workshop: Building the Next Generation of Application Scientists, Supercomputing Conference 2009, Portland, 2009
190. Implementing a k - ε Turbulence Model in the FEniCS Finite Element Programming Environment
     K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
191. Simulation Methodology for Bioflows
     K. Valen-Sendstad, K.-A. Mardal and A. Logg
     Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, May 05, 2009
192. Numerical Modeling of Aerosol Dispersion Inside a Rotating Aerosol Chamber
     M. Vartdal and B. A. P. Reif
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
193. Large Eddy Simulations of the Evaporation From a Liquid Pool Beneath a Turbulent Air Flow
     T. Vik and B. A. P. Reif
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
194. Parallel Simulation of Dual Lithology Sedimentation
     W. Wei, S. R. Clark, X. Cai and A. M. Bruaset
     NOTUR 2009 conference, Trondheim, May 18-20, 2009
195. Using Cython to Speed Up Numerical Python Programs
     I. Wilbers, H. P. Langtangen and Å. Ødegård
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
196. Unsteady RANS Modelling of Pollutant Dispersion in an Idealized Urban Area
     E. M. M. Wingstedt and B. A. P. Reif
     MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
197. A Lumped Particle Modeling Framework for the Transport of Particles
     O. Al-Khayat
     CBC Workshop on Tsunami Modeling, June 3-4, 2010
198. A Multiscale Lumped Particle Modeling Framework for the Simulation of Turbidity Currents
     O. Al-Khayat
     Poster at the 7th EGU General Assembly, vol 12, Vienna, 2010
199. Technological Disruption: Opportunities for Change
     S. Baden
     International FEniCS'10 workshop, KTH, Stockholm, 2010
200. GPUs: Supercomputers for All, Opportunities and Folklore
     S. Baden
     Section for Scientific Computing, Technical University of Denmark, 2010
201. GPUs: Supercomputers for All, Opportunities and Folklore
     S. Baden
     PDC/CSC, KTH, Stockholm, 2010
202. Microplate Modeling of the Afar Depression Using 4D Lithospheric Model (4DLM) and Splates: Implications for Development of Plate Boundaries
     H. C. Bender, A. K. Thurmond, J. Skogseid and S. R. Clark
     Geological Society of America, 2010
203. Computational Simulations of the Shaken Baby Syndrom - History and Challenges
     A. Blechingberg
     AC/DC seminar series, 2010
204. The Baby Justicia Project: Biomechanical Investigations of the Shaken Baby Syndrome (SBS),
     A. Blechingberg, K.-A. Mardal, F. Strisland, J. Sundnes, T. O. Rognum, Å. Vege, M. Weensvangen and A. Stray-Pedersen
     WCB2010, Seminar session, Head/Brain Injury - Models, 2010., 2010
205. Comparisons Between the Runup-Models MOST and GEO- CLAW in 2HD
     R. E. Bredesen
     CBC Workshop on Tsunami Modeling, June 3-4, 2010
206. Detailed Numerical Analyses of the Aliev-Panfilov Model on GPGPU
     X. Cai, D. Unat and S. Baden
     Para 2010: State of the Art in Scientific and Parallel Computing in Reykjavík on June 6-9, 2010
207. Parallel Programming Using Python
     X. Cai
     CBC Seminar on advanced use of Python programming language, 2010
208. Effect of Mitral Valve Shape on Flow Dynamics During Left Ventricular Contraction
     S. K. Dahl and B. H. Skallerud
     World Congress in Biomechanics, Singapore, 2010
209. Mitralklaffens Form I Systolen
     S. K. Dahl
     Rikshospitalet University Hospital, Oslo, Norway, March, 2010
210. Propagation and Run-Up of Rockslide Generated Tsunamies in Complex Fjord Systems
     S. Glimsdal, C. B. Harbitz, G. K. Pedersen, R. E. Bredesen, A. Jensen and F. Løvholt
     EGU General Assembly, Geophysical Research Abstracts (European Geoscience Union), Copernicus, GmbH, 2010
211. Modeling of Ca Dynamics in the Dyadic Cleft: Mixing Continuous Description of the Diffusive Process With Discrete Channel Dynamics
     J. E. Hake
     Biological Diffusion and Brownian Dynamics Brainstorm 2, 2010
212. On Cerebrospinal Fluid Flow
     V. Haughton
     CBC Workshop on Cerebrospinal Fluid Flow in the Brain and Spinal Canal - Clinical, Experimental and Mathematical Models and Problems, Simula, May 28, 2010
213. Analysis and Implementation of High-Precision Finite Element Methods for Ordinary Differential Equations With Application to the Lorenz System
     B. Kehlet
     AC/DC seminar series, 2010
214. Meshbuilder Brainstorming
     B. Kehlet
     AC/DC seminar series, 2010
215. A Reference Solution for the Lorenz System on [0, 1000]
     B. Kehlet and A. Logg
     8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
216. Computational Modeling of Huge Tsunamis From Asteroid Impacts
     H. P. Langtangen
     Computational Geoscience Seminar, 2010
217. HPC Needs for Biomedical Flows and Productivity of Future Computational Scientists
     H. P. Langtangen and X. Cai
     National Seminar on Future Needs for eInfrastructure in Norway, 2010
218. Nya Verktyg, Nyy Möjligheter
     A. Logg
     Sveriges matematiklärarförening (SMaL), 2010
219. FEniCS 1.0 (?)
     A. Logg
     International FEniCS'10 workshop, KTH, Stockholm, 2010
220. Automated Scientific Computing
     A. Logg
     Chalmers University of Technology, 2010
221. Implementation of FEM Assembling in DOLFIN
     A. Logg
     AC/DC seminar series, 2010
222. Automated Goal-Oriented Error Control
     A. Logg and M. E. Rognes
     China–Norway–Sweden Workshop on Computational Mathematics, 2010
223. Automated Scientific Computing
     A. Logg
     23rd Chemnitz FEM Symposium, 2010
224. FEniCS: Automated Scientific Computing
     A. Logg
     8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
225. Stochastic Variation of Tsunami Run-Ups Due to Heterogenous Slip on Reverse Faults
     F. Løvholt, S. Bazin, R. E. Bredesen, C. B. Harbitz, D. Kohn and H. Bungum
     7th EGU General Assembly, Geophysical Research Abstracts (European Geoscience Union), Copernicus, 2010
226. Right Through the Heart: Perspectives and Problems
     M. M. Maleckar
     CBC Workshop, Right Through the Heart: Snapshots of Current and Future Research in Cardiac Modeling, 2010
227. CSF Strømning I Forbindelse Med Chiari Malformasjon Og Syringomyelia
     K.-A. Mardal
     CBC Workshop on Clinical Issues Related to the Cerebrospinal Fluid, 2010
228. Is Zombies a Threat to Mankind
     K.-A. Mardal, H. P. Langtangen and P. Røtnes
     International FEniCS'10 workshop, KTH, Stockholm, 2010
229. Convergence Theory for Adaptive Finite Elements
     A. Massing
     AC/DC seminar series, 2010
230. Nitsche's Method on Overlapping Meshes in 3D
     A. Massing
     AC/DC seminar series, 2010
231. Introduction to Turbulence Modeling With FEniCS (CBC.RANS)
     M. Mortensen
     CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
232. The G2 Navier Stokes Solver – on Why It Failed the Benchmark Test
     M. Mortensen
     CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
233. What Is CBC.Twist
     H. Narayanan
     AC/DC seminar series, 2010
234. An Automated Computational Framework for Hyperelasticity
     H. Narayanan
     Fourth European Conference on Computational Mechanics, Paris, France, 2010
235. An Adaptive, Error-Controlled Scheme for the Navier-Stokes Equations With Applications to Biomedical Flow
     H. Narayanan
     International FEniCS'10 workshop, KTH, Stockholm, 2010
236. What Is Cbc.twist?
     H. Narayanan
     AC/DC seminar series, 2010
237. Theoretical and Practical Aspects of the Inverse Ischemia Problem
     B. F. Nielsen, O. M. Lysaker and P. Grøttum
     Karlsruhe Institute of Technology, Germany, 2010
238. An Operator Theoretical Approach to Preconditioning Optimality Systems
     B. F. Nielsen and K.-A. Mardal
     European Multi-Grid Conference, EMG, 2010
239. Automated Goal-Oriented Error Control for Stationary Variational Problems
     M. E. Rognes and A. Logg
     International FEniCS'10 workshop, KTH, Stockholm, 2010
240. Automated Goal-Oriented Error Control for Stationary Variational Problems
     M. E. Rognes and A. Logg
     European Finite Element Fair, University of Warwick, 2010
241. Automated Goal-Oriented Error Control With Applications to Fluid Flow
     M. E. Rognes and A. Logg
     CBC Workshop on Cerebral Blood Flow and Stroke - Clinical, Experimental and Mathematical Models and Problems, 2010
242. A Framework for Automated Goal-Oriented Error Control
     M. E. Rognes and A. Logg
     BIT 50 – Trends in Numerical Computing, 2010
243. Automated Goal-Oriented Error Control With Applications to Nonlinear Elasticity
     M. E. Rognes and A. Logg
     DSPDEs 2010 - Emerging Topics in Dynamical Systems and Partial Differential Equations, Barcelona, 2010
244. Automated Goal-Oriented Error Control
     M. E. Rognes
     8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
245. Scientific Computing - the (he)art of Modern Sciences
     A. Schroll
     Forskningens Dag, SDU, 2010
246. An Adaptive Finite Element Method for Fluid Structure-Interaction Problems
     K. Selim
     International FEniCS'10 workshop, KTH, Stockholm, 2010
247. A Posteriori Error Analysis of Adaptive Finite Element Methods for Fluid-Structure Interaction
     K. Selim
     AC/DC seminar series, 2010
248. Using Python for Scientific Computing
     O. Skavhaug
     CBC Seminar on advanced use of Python programming language, 2010
249. Cerebrospinal Fluid (CSF) - Oscillating Flow and Pressure
     K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
     CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
250. CSF Hydrodynamic in Patients With Syringomyelia and Chiari I Malformations
     K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
     Annual NUPUS meeting in Freudenstadt, 2010
251. Cerebrospinal Fluid (CSF) - Oscillating Flow and Pressure
     K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
     Selected Topics Seminar IWS Stuttgart, 2010
252. From a Physical Problem to Computer Simulations
     K.-H. Støverud, K.-A. Mardal and H. P. Langtangen
     CBC Workshop on Cerebrospinal Fluid Flow in the Brain and Spinal Canal - Clinical, Experimental and Mathematical Models and Problems, Simula, May 28, 2010
253. Evolution of Functional -Not Architectural Modularity in Body Plan Patterning
     K. ten Tusscher
     EuroEvoDevo conference, Paris, 2010
254. Evolution of Functional -Not Architectural Modularity in Body Plan Patterning
     K. ten Tusscher
     Dutch Theoretical Biology conference, Schoorl, 2010
255. Evolution of Complex Animal Body Plans
     K. ten Tusscher
     Dynamics of Patterns and Complex Systems meeting, Enschede, 2010
256. Optimizing the Aliev-Panfilov Model of Cardiac Excitation on Heterogeneous Systems
     D. Unat, X. Cai and S. Baden
     Para 2010: State of the Art in Scientific and Parallel Computing in Reykjavík on June 6-9, 2010
257. Revisiting Finite Element Matrix Assembly
     D. Unat
     AC/DC seminar series, 2010
258. Accelerating Finite Difference Method on Graphic Processors (GPUs)
     D. Unat
     CBC Talk, 2010
259. Introduction to Programming a GPU With CUDA and a Case Study: Accelerating Stencil Computation With GPUs
     D. Unat and S. Baden
     CBC Seminar on GPU Programming and Computing - May 4, 2010
260. Mint: an OpenMP to CUDA Translator
     D. Unat
     GPU Technology Conference, San Jose, CA, 2010
261. A Note on the Efficiency and Accuracy of Some Common Finite Element Schemes for the Incompressible Navier-Stokes Equations
     K. Valen-Sendstad
     AC/DC seminar series, 2010
262. Presence of Turbulence in Intracranial MCA Aneurysms
     K. Valen-Sendstad
     CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
263. Towards a Virtual Lung
     A. Wahlberg
     International FEniCS'10 workshop, KTH, Stockholm, 2010
264. Meshing the Human Lung
     A. Wahlberg
     AC/DC seminar series, 2010
265. Basic Electromechanical Simulations
     S. Wall
     CBC Seminar Series on Computational Cardiac Modeling, 2010
266. Parallel Programming, OpenMP
     W. Wei
     CBC Lecture on Parallel Programming, OpenMP, March 17, 2010
267. The Unified Form Language - a Domain Specific Language for Finite Element Methods
     M. S. Alnaes
     European Numerical Mathematics and Advanced Applications (ENUMATH), 2011
268. Parallel Simulation of Particle Transport Using OpenMP
     X. Cai
     Guest lecture at UCSD on January 31, 2011
269. A Function-Centric Generic Framework for Parallelization
     X. Cai
     CLS Workshop at UiO on April 13, 2011
270. Study of the Computational Efficiency for Different Usages of Pythoning
     X. Cai
     CLS Workshop at UiO on April 13, 2011
271. Programming With OpenMP and Mixed MPI-OpenMP
     X. Cai
     Invited lecture at pre-conference workshop of NOTUR 2011, 2011
272. Efficient Computations of Initial-Value Problems Involving Fractional Derivatives
     X. Cai and W. Zhang
     Seminar on wave propagation in complex media, November 23, 2011
273. Programming With OpenMP and Mixed MPI-OpenMP
     X. Cai
     Invited lecture during USIT's Research Computing Services training week, November 14-17, 2011
274. A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding
     T. Gillberg
     The 19th International Congress on Modelling and Simulation (MODSIM2011), 2011
275. Code Generation for Time Dependent Problems
     B. Kehlet
     FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
276. Computational Modeling of Intracellular Calcium Dynamics in Human Atrial Myocytes: Impact on Action Potential Morphology
     J. Koivumäki
     Seminar at the Technical University of Dresden, Germany, 2011
277. Kaos I Hjernen - Ny Innsikt Gjennom Simuleringer
     H. P. Langtangen
     The University of Oslo 1-day seminar: Realiseter invaderer helsevesenet, 2011
278. Abnormal Flows in the Brain and the Spine: How to Better Understand Diseases by Computations
     H. P. Langtangen
     The Computational Life Science seminar, University of Oslo, 2011
279. Kaos I Hjernen - Ny Innsikt Gjennom Simuleringer
     H. P. Langtangen
     Fysikkforeningen, 2011
280. Adaptive Finite Element Methods for Fluid-Structure Interaction and Incompressible Flow
     A. Logg
     FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
281. The FEniCS Project
     A. Logg
     Det Norske Veritas 2011-05-11, 2011
282. The FEniCS Project
     A. Logg
     NOTUR 2011, University of Oslo, 2011-05-23, 2011
283. The FEniCS Project
     A. Logg
     Workshop on Multiscale Problems and Methods, Simula Research Laboratory, 2011-06-17, 2011
284. The FEniCS Project
     A. Logg
     EuroSciPy 2011 / Python in Physics, Ecole normale sup\'erieure, Paris, 2011-08-09, 2011
285. Solving Poisson's Equation With DOLFIN 0.2.11 (2002): a Study of the Portability of Scientific Codes Across the Time Domain
     A. Logg
     Biocomp Seminar, Simula Research Laboratory, 2011-09-28, 2011
286. Adaptive Finite Element Methods for Fluid-Structure Interaction and Incompressible Flow
     A. Logg
     Simula/NTNU Workshop, Simula Research Laboratory, 2011-11-17, 2011
287. Efficient Implementation of Nitsche's Method on Overlapping Meshes for Interface Problems in 3D
     A. Massing
     FEF 2011, Munich, Germany, 2011
288. Efficient Implementation of Nitsche's Method on Overlapping Meshes for Coupled Problems in 3D
     A. Massing
     Coupled Problems 2011, Kos, Greece, 2011
289. Nitsche's Method for Fictitious Domain and Overlapping Meshes (in 3D)
     A. Massing
     FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
290. Efficient Implementation of Nitsche's Method on Overlapping Meshes in 3D
     A. Massing
     SIAM CSE Reno, Nevada, USA, 2011
291. Nitsche's Method for Fictitious Domain and Overlapping Meshes (in 3D)
     A. Massing
     UMIT Research Seminar, Umeå, Sweden, 2011
292. The Role of K+ Channels in Human Articular Chondrocyte Electrophysiology: a Computational Perspective
     H. Narayanan
     CaMo Seminar, 2011
293. Finite Element Analysis of the Mitral Valve With Active Muscle Fibres
     V. Prot and B. Skallerud
     SIAM CSE Reno, Nevada, USA, 2011
294. FEniCS After 1.0: Current Trends at CBC@Simula
     M. E. Rognes
     FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
295. More Or Less Shocking: Using Energy Estimates to Answer Scientific Questions
     M. E. Rognes
     Biocomp Seminar, Simula Research Laboratory, October 2011, 2011
296. Automated Goal-Oriented Error Control a Posteriori Error Estimation and Adaptivity in Finite Element Exterior Calculus
     M. E. Rognes
     USNCCM '11, Minneapolis, 2011
297. Bringing Error Control to the Non-Expert - Automation of a Posteriori Error Estimation
     M. E. Rognes
     CBC Workshop on Multiscale Problems and Methods, 2011
298. Automated Goal-Oriented Error Control
     M. E. Rognes
     CBC workshop on Biomechanics, November 2011, 2011
299. The FEniCS Project
     M. E. Rognes
     Imperial College, 2011
300. Goal-Oriented Error Control Automated!
     M. E. Rognes
     SIAM CSE Reno, Nevada, USA, 2011
301. Error Control and Adaptivity for the Non-Expert
     M. E. Rognes
     CBC Workshop on Biomedical Modeling, 2011
302. FEniCS: the Next Generation PDE Software
     M. E. Rognes
     CBC Workshop on Biomedical Modeling, 2011
303. On Automated Computational Modeling in the Geo- and Life Sciences
     A. Schroll
     Numerical methods for hyperbolic equations Recent trends and future directions (SAMHYP), ETH ZÜrich, Switzerland, 2011
304. Self Calibrating, Adaptive Models in the Geo- and Life Sciences
     A. Schroll
     Inverse Problems Workshop, 2011
305. Ongoing Research: Characterize CSF Flow and Identify the Cause of Syringomyelia With CFD
     K.-H. Støverud and V. Haughton
     The workshop "Working Toward a Day Without Pain Gala", Buffalo, 2011
306. Cerebrospinal Fluid (CSF) Oscillating Flow and Pressure
     K.-H. Støverud
     CBC Workshop on CSF Flow Associated with Chiari and Syringomyelia, 2011
307. Cerebrospinal Fluid (CSF) Flow in Chiari I and Syringomyelia
     K.-H. Støverud
     CBC Seminar / Third semester presentation, 2011
308. The Use and Potential of FEniCS in Medical Applications
     K.-H. Støverud
     FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
309. CSF Flow and Pressure in the Cervical Spine
     K.-H. Støverud
     CBC Workshop on Biomedical Modeling, 2011
310. The Effect of Varying Cross-Sectional Areas on Cerebrospinal Fluid Flow and Pressure in the Cervical Spine
     K.-H. Støverud
     MekIT'11 Sixth national conference on Computational Mechanics, 2011
311. Computational Cerebral Hemodynamics
     K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
     The Norwegian Defence Research Establishment, 2011
312. Simulation Methodology for Cerebral Blood Flow
     K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
     Biomedical Simulation Lab, Institute of Biomaterials and Biomedical Engineering at the University of Toronto, 2011
313. Direct Numerical Simulation of Transitional Flow in Patient–Specific Intracranial Aneurysms
     K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
     ASME 2011 Summer Bioengineering Conference, 2011
314. 'Turbulence' in Cerebral Aneurysms
     K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, H. P. Langtangen, B. A. P. Reif and D. A. Steinman
     CBC workshop on Biomechanics, November 2011, 2011
315. Multi-Scale Modeling of the Heart - Computational Approaches and Applications to Biomedicine
     S. Wall
     Scientific Computing and Imaging Institute, University of Utah,, 2011
316. Modeling the Infarct Injured Heart, Insights Into Mechanical Dysfunction
     S. Wall
     SIAM CSE Reno, Nevada, USA, 2011
317. Modeling Coupled Electromechanics in the Cardiovascular System
     S. Wall, J. Sundnes, N. Trayanova, R. C. P. Kerkhoffs and V. Prot
     SIAM CSE Reno, Nevada, USA, 2011

Posters

1. A Stochastic Model of the Ryanodine Receptor Featuring Coupled Gating and Competitive Binding of Luminal and Cytosolic Ca2+ and Mg2+
   J. E. Hake, W. E. Louch, K. Haugen, I. Sjaastad, S. O. M., A. D. McCulloch, A. P. Michailova and G. T. Lines
   Annual meeting in Biophysical Society, 2011
2. Contributions of Multiple T-Tubules and Membrane Ca2+ Flux Localization to Sub-Cellular Ca2+ Signaling in Rabbit Ventricular Myocytes
   P. Kekenes-Huskey, J. E. Hake, Y. Cheng, F. Sachse, J. Bridge, A. McCammon and A. P. Michailova
   2. Gordon Research Conferences: Calcium Signalling, 2011
3. Contributions of Structural T-Tubule Heterogeneities and Membrane Ca2+ Flux Localization to Local Ca2+ Signaling in Rabbit Ventricular Myocytes
   P. Kekenes-Huskey, J. E. Hake, Y. Cheng, F. Sachse, J. Bridge, A. J. McCammon and A. P. Michailova
   4th Cardiac Physiome Workshop, Merton College, Oxford, 2011
4. Excitation-contraction Coupling in Human Atrial Myocytes: Remodeling in Atrial Fibrillation
   J. Koivumäki
   35th Meeting of the European Working Group on Cardiac Cellular Electrophysiology, 2011
5. Rate-Dependent Regulation of Sarcoplasmic Reticulum Ca2+ ATPase in Human Atrial Myocytes
   J. Koivumäki
   The Scandinavian Physiological Society Annual Meeting, 2011