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CBC Publications sorted by author

CBC only reports publications where a significant part of the research has been funded by CBC. By this we mean that at least one of the authors of the reported publications must have his/her main affiliation with CBC, and has contributed to the publication as laid out in Simula's publication guidelines.

Publications from people with part time positions at CBC are generally not counted, unless the research is particularly relevant for a CBC project. Such exceptions from the main rule are few, and must in all cases be approved by the director of the center.

Authors in bold are part of CBC

Omar Al-Khayat

    Articles in International Journals

    1. A Lumped Particle Modeling Framework for Simulating Particle Transport in Fluids
      O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
      Communications in Computational Physics, vol. 8, pp. 115—142, 2010
    2. Particle Collisions in a Lumped Particle Model
      O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
      Communications in Computational Physics, vol. 10, pp. 823—843, 2011, [DOI]
    3. Computational Aspects of Multiscale Simulation With the Lumped Particle Framework
      O. Al-Khayat and H. P. Langtangen
      Communications in Computational Physics, vol. 12, pp. 1257—1274, 2012

    Refereed Proceedings

    1. Lattice Boltzmann Method and Turbidity Flow Modeling
      O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
      in MekIT'07 : Fourth National Conference in Computational Mechanics, 2007

    Theses

    1. Mesoscale Modeling of Particle Flow
      O. Al-Khayat
      Ph.D. Thesis, University of Oslo, 2010

    Talks

    1. Introduction to Particle Based Lattice Boltzmann Methods
      O. Al-Khayat
      Minisymposium Talk, 2007
    2. Lattice Boltzmann Method and Turbidity Flow Modeling
      O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
      Talk at MekIT'07: Fourth National Conference on Computational Mechanics, 2007
    3. Particle-Based Methods in the Modelling of Turbidity Currents and Turbidites
      O. Al-Khayat, T. M. Løseth, A. M. Bruaset and H. P. Langtangen
      Talk at the 33rd IGC Congress in Oslo, 2008
    4. Numerical Modeling of Turbidity Flow With the Lattice Boltzmann Method
      O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
      Talk at the Computational Geoscience workshop, 2008
    5. A Coupled Lattice Boltzmann Model for a Turbulent Sand-Laden Fluid Flow
      O. Al-Khayat, H. P. Langtangen and A. M. Bruaset
      Talk at the DSFD conference in Brazil, 2008
    6. Numerical Python
      H. P. Langtangen, O. Al-Khayat and A. M. Bruaset
      Four day course at the University of Erlangen, 2008
    7. A Lumped Particle Modeling Framework for the Transport of Particles
      O. Al-Khayat
      Talk at CBC workshop on Tsunami Modelling, 2010
    8. A Multiscale Lumped Particle Modeling Framework for the Simulation of Turbidity Currents
      O. Al-Khayat
      Poster at the 7th EGU General Assembly, vol 12, Vienna, 2010

    Martin Sandve Alnæs

      Articles in International Journals

      1. Computation of Hemodynamics in the Circle of Willis
        M. S. Alnæs, J. G. Isaksen, K.-A. Mardal, B. Romner, M. K. Morgan and T. Ingebrigtsen
        Stroke, vol. 38, pp. 2500—2505, 2007
      2. Unified Framework for Finite Element Assembly
        M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
        International Journal of Computational Science and Engineering, vol. 4, pp. 231—244, 2009
      3. On the Efficiency of Symbolic Computations Combined With Code Generation for Finite Element Methods
        M. S. Alnæs and K.-A. Mardal
        ACM Transactions on Mathematical Software, vol. 37, 2010
      4. Unified Form Language: a Domain-Specific Language for Weak Formulations of Partial Differential Equations
        M. S. Alnæs, A. Logg, K. B. Ølgaard, M. E. Rognes and G. N. Wells
        ACM Transactions on Mathematical Software, vol. 40, 2014
      5. Computational fluid dynamics evaluation of flow reversal treatment of giant basilar tip aneurysm
        M. S. Alnæs, K.-A. Mardal, S. J. Bakke and A. Sorteberg
        Interventional Neuroradiology, vol. 21, pp. 586—591, 2015, [DOI]
      6. Poro-elastic modeling of Syringomyelia – a systematic study of the effects of pia mater, central canal, median fissure, white and gray matter on pressure wave propagation and fluid movement within the cervical spinal cord
        K.-H. Støverud, M. S. Alnæs, H. P. Langtangen, V. Haughton and K.-A. Mardal
        Computer Methods in Biomechanics and Biomedical Engineering, vol. 19, pp. 686—698, 2015, [DOI]
      7. The FEniCS Project Version 1.5
        M. S. Alnæs, J. Blechta, J. E. Hake, A. Johansson, B. Kehlet, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
        Archive of Numerical Software, vol. 3, 2015
      8. Adjoint Multi-Start Based Estimation of Cardiac Hyperelastic Material Parameters using Shear Data
        G. Balaban, M. S. Alnæs, J. Sundnes and M. E. Rognes
        Biomechanics and Modeling in Mechanobiology, pp. 1—13, 2016
      9. Variational data assimilation for transient blood flow simulations
        S. W. Funke, M. Nordaas, Ø. Evju, M. S. Alnæs and K.-A. Mardal
        Accepted for publication in International Journal for Numerical Methods in Biomedical Engineering, 2017

      Chapters in Books

      1. A Hybrid Approach to Efficient Finite Element Code Development
        A. Logg, K.-A. Mardal, M. S. Alnæs, H. P. Langtangen and O. Skavhaug
        in Petascale Computing - Algorithms and Applications, Edited by D. A. Bader, Chapman and Hall, 2007
      2. Instant: Just-in-Time Compilation of C/C++ in Python
        I. Wilbers, K.-A. Mardal and M. S. Alnæs
        in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 253—268, 2012
      3. UFC: a Finite Element Code Generation Interface
        M. S. Alnæs, A. Logg and K.-A. Mardal
        in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 279—298, 2012
      4. UFL: a Finite Element Form Language
        M. S. Alnæs
        in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 299—334, 2012
      5. SyFi and SFC: Symbolic Finite Elements and Form Compilation
        M. S. Alnæs and K.-A. Mardal
        in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 269—278, 2012

      Refereed Proceedings

      1. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
        M. S. Alnæs, K.-A. Mardal and J. Sundnes
        in Fourth national conference on Computational Mechanics (MekIT'07), 2007

      Conference Proceedings

      1. Least Squares Fitting of a Cardiac Hyperelasticity Model Using an Automatically Derived Adjoint Equation
        G. Balaban, J. Sundnes, M. S. Alnæs and M. E. Rognes
        in Proceedings of NSCM-27: the 27th Nordic Seminar on Computational Mechanics, 2014

      Manuals

      1. UFC Specification and User Manual 1.0
        M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
        2007
      2. UFL Specification and User Manual
        M. S. Alnæs and A. Logg
        2009

      Theses

      1. A Compiler Framework for Automatic Linearization and Efficient Discretization of Nonlinear Partial Differential Equations
        M. S. Alnæs
        Ph.D. Thesis, University of Oslo, 2009

      Talks

      1. Computing the Mechanics of the Heart
        M. S. Alnæs
        Talk at CBC, Seminar on Electrophysiology Modeling, 2007
      2. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
        M. S. Alnæs, K.-A. Mardal and J. Sundnes
        Talk at MekIT'07: Fourth National Conference on Computational Mechanics, 2007
      3. A Finite Element Model of Cardiac Electrophysiology and Mechanics
        J. Sundnes, M. S. Alnæs and K.-A. Mardal
        VII International conference on computational plasticity, 2007
      4. Two Steps Towards Automating Efficient Solution of Inverse Problems
        K.-A. Mardal, B. F. Nielsen and M. S. Alnæs
        Invited Talk at the FEniCS 08 Workshop, March 5-7,Baton Rouge, Louisiana, 2008
      5. SFC - the SyFi Form Compiler
        M. S. Alnæs and K.-A. Mardal
        Talk at the FEniCS 08 Workshop, March 5-7,Baton Rouge, Louisiana, 2008
      6. The Unified Form Language
        M. S. Alnæs
        Presentation at the FEniCS'09 Workshop, 2009
      7. The Unified Form Language
        M. S. Alnæs
        Internal presentation at CBC, 2009
      8. The Finite Element Library FEniCS and Simulation of Blood Flow in Cerebral Aneurysms
        K.-A. Mardal, K. Valen-Sendstad, M. S. Alnæs, M. Mortensen, H. P. Langtangen and B. A. P. Reif
        Talk at CSB Seminar, University of Stuttgart, 2011
      9. The Unified Form Language - a Domain Specific Language for Finite Element Methods
        M. S. Alnæs
        European Numerical Mathematics and Advanced Applications (ENUMATH), 2011
      10. Efficient Preconditioning of Optimality Systems
        K.-A. Mardal, B. F. Nielsen and M. S. Alnæs
        EMG 2012, 2012
      11. News in C++11
        M. S. Alnæs
        CBC Seminar series, 2012
      12. Numerical Comparison of Preconditioned Oneshot and Steepest Descent on Linear Elliptic Optimal Control Problems
        M. S. Alnæs
        OCIP 2012, 2012
      13. Efficient Compilation of Complex Tensor Algebra Expressions
        M. S. Alnæs
        FEniCS Workshop 2012, Simula Research Laboratory, 2012
      14. Automation of PDE Constrained Optimization - Algorithmic Differentiation As Abstract Building Blocks in High Level Algorithms
        M. S. Alnæs
        ECCOMAS 2012, Wien, 2012
      15. A Domain Specific Language and Symbolic Library for FEM Formulations of PDEs - the Unified Form Language
        M. S. Alnæs
        FEniCS@Imperial Day, Imperial College London, 2012
      16. Status of Effective Translation of Complicated Forms in FEniCS - the UFLACS Project
        M. S. Alnæs
        Jesus College, Cambrigde, 2013
      17. Towards Navier-Stokes Data Assimilation for Hemodynamics Using Automated Adjoint Methods
        M. S. Alnæs
        V International Symposium on Modelling of Physiological Flows (MPF2013), 2013
      18. Computational Investigation of Parent Artery Flow Reversal for Basilar Top Aneurysm
        M. S. Alnæs
        5th Asia Pacific Congress on Computational Mechanics & 4th International Symposium on Computational Mechanics, 2013
      19. Data Assimilation With Navier-Stokes Splitting Schemes and Dolfin-Adjoint
        M. S. Alnæs
        CBC and CCI Workshop on Advancing Numerical Technologies in the Cardiac Domain, May 15, 2013
      20. Status of Effective Translation of Complicated Forms in FEniCS
        M. S. Alnæs
        CBC seminar series, 2013
      21. The Unified Form Language – Features, implementation and future
        M. S. Alnæs
        PRISM Workshop, Imperial College London, 2014
      22. High level abstractions for finite element methods – The Unified Form Language and the FEniCS project
        M. S. Alnæs
        CBC/Uppsala workshop, Simula Research Laboratory, 2014
      23. Towards a Unified Framework for Automated a Posteriori Error Estimation and Adaptivity in Space-Time
        M. E. Rognes, B. Kehlet, A. Logg and M. S. Alnæs
        SIAM CSE, Salt Lake City, USA, 2015
      24. Identifying the Parameters of the Heart: Variational Data Assimilation in Cardiac Mechanics Using Dolfin-Adjoint
        M. E. Rognes, G. Balaban, J. Sundnes and M. S. Alnæs
        FEniCS '15, Imperial College London, UK, 2015
      25. Variational data assimilation for blood flow simulations
        K.-A. Mardal, S. W. Funke, M. Nordaas, Ø. Evju and M. S. Alnæs
        MS at SIAM UQ, Zurich, 2016
      26. Diffing and Merging Jupyter Notebooks with nbdime
        B. Ragan-Kelley, V. T. Fauske and M. S. Alnæs
        SciPy 2016, 2016
      27. nbdime: diffing and merging notebooks
        V. T. Fauske, M. S. Alnæs and B. Ragan-Kelley
        JupyterDay Orsay, 2016
      28. nbdime: Notebook Diffing and Merging
        V. T. Fauske, M. S. Alnæs and B. Ragan-Kelley
        EuroSciPy 2016, Erlangen, Germany, 2016
      29. The Unified Form Language and Key Points on its Translation
        M. S. Alnæs
        SIAM CSE, Atlanta, USA, 2017
      30. 3D visualization in Jupyter Notebooks
        M. S. Alnæs, V. T. Fauske and B. Ragan-Kelley
        Luxembourg, 2017
      31. Notebooks in Version Control - diffing and merging with nbdime
        V. T. Fauske, B. Ragan-Kelley and M. S. Alnæs
        Computational Mathematics with Jupyter workshop, Edinburgh, Scotland, 2017

      Posters

      1. FEniCS: Sustainable Software Development Practices
        M. S. Alnæs, J. Blechta, J. S. Hale, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
        2017

      Øyvind Andreassen

        Articles in International Journals

        1. Tracking Airborne Legionella and Legionella Pneumophila at a Biological Treatment Plant
          J. M. Blatny, B. A. P. Reif, G. Skogan, Ø. Andreassen, A. Høiby, E. Ask, V. Waagen, D. Aanonsen, I. S. Aaberge and D. A. Caugant
          Enviromental Science & Technology, vol. 42, pp. 7360—7367, 2008, [DOI]
        2. Variational Multiscale Turbulence Modelling in a High Order Spectral Element Method
          C. E. Wasberg, T. Gjesdal, B. A. P. Reif and Ø. Andreassen
          Journal of Computational Physics, vol. 228, pp. 7333—7356, 2009, [DOI]
        3. Dispersion of Legionella-Containing Aerosols From a Biological Treatment Plant
          J. M. Blatny, H. E. Fossum, J. Ho, M. Tutkun, G. Skogan, Ø. Andreassen, E. M. Fykse, V. Waagen and B. A. P. Reif
          Frontiers in Bioscience, vol. E3, pp. 1300—1309, 2011

        Refereed Proceedings

        1. Tracking Pathogenic Biological Agents in Air - a Case Study of the Outbreak of Legionellosis in Norway
          J. M. Blatny, E. M. Fykse, B. A. P. Reif, Ø. Andreassen, J. S. Olsen and V. Waagen
          in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
        2. Modeling the Dispersion and Transport of Aerosols Emitted From Industrial Facility During 2005 and 2008 Outbreaks of Legionnaire's Disease in Norway
          H. E. Fossum, M. Tutkun, B. A. P. Reif and Ø. Andreassen
          in Sixth national conference on Computational Mechanics (MekIT'11), 2011

        Hermenegild Arevalo

          Articles in International Journals

          1. Susceptibility to Reentry in the Infarcted Heart Depends on the Active Fibroblast Density
            K. McDowell, H. Arevalo, M. Maleckar and N. A. Trayanova
            Biophysical Journal, vol. 110, pp. 1307—15, 2011
          2. Arrhythmia risk stratification of patients after myocardial infarction using personalized heart models
            H. Arevalo, F. Vadakkumpadan, E. Guallar, A. Jebb, P. Malamas, K. C. Wu and N. A. Trayanova
            Nature Communications, vol. 7, 2016, [DOI]
          3. Optogenetic defibrillation terminates ventricular arrhythmia in mouse hearts and human simulations
            T. Bruegmann, P. M. Boyle, C. Vogt, T. Karathanos, H. Arevalo, B. Fleishmann, N. A. Trayanova and P. Sasse
            The Journal of Clnical Investigation, vol. 126, 2016, [DOI]

          Refereed Proceedings

          1. From MR image to patient-specific simulation and population-based analysis:Tutorial for an openly available image-processing pipeline
            M. Marciniak, H. Arevalo, J. Tfelt-Hansen, T. Jespersen, R. Jabbari, C. Glinge, K. A. Ahtarovski, N. Vejlstrup, M. Maleckar and K. S. Mcleod
            in MICCAI Workshop on Statistical Atlases and Cardiac Models of the Heart, 2016
          2. A multiple kernel learning framework to investigate the relationship between ventricular fibrillation and first myocardial infarction
            M. Marciniak, H. Arevalo, J. Tfelt-Hansen, K. A. Ahtarovski, T. Jespersen, R. Jabbari, C. Glinge, N. Vejlstrup, T. Engstrom, M. Maleckar and K. S. Mcleod
            in Functional Imaging and Modelling of the Heart, 2017

          Posters

          1. Effects of Fibroblast-Myocyte Coupling in the Infarcted Rabbit Heart
            K. McDowell, H. Arevalo, M. Maleckar, B. RC, P. G. and N. A. Trayanova
            Heart Rhythm, 2009
          2. A data-driven framework uncovers arrhythmogenic mechanisms in a 'functionally calibrated' population of models
            M. Vagos, H. Arevalo, F. Sacco and M. Maleckar
            2017

          Robert Artebrant

            Articles in International Journals

            1. Third Order Accurate Non-Polynomial Reconstruction on Rectangular and Triangular Meshes
              R. Artebrant
              Journal of Scientific Computing, vol. 30, pp. 193—221, 2007
            2. Increasing the Accuracy in Locally Divergence-Preserving Finite Volume Schemes for MHD
              R. Artebrant and M. Torrilhon
              Journal of Computational Physics, vol. 227, pp. 3405—3427, 2008
            3. An Unconditionally Stable Second Order Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
              M. Hanslien, R. Artebrant, J. Sundnes and A. Tveito
              International Journal of Numerical Analysis and Modeling, vol. 6, pp. 627—641, 2009
            4. A Second Order Algorithm for Solving Dynamic Cell Membrane Equations
              J. Sundnes, R. Artebrant, O. Skavhaug and A. Tveito
              IEEE Transactions on Biomedical Engineering, vol. 56, pp. 2546—2548, 2009
            5. Bifurcating Solutions to the Monodomain Model Equipped With FitzHugh-Nagumo Kinetics
              R. Artebrant
              Journal of Applied Mathematics, vol. 2009, 2009, [DOI]
            6. A Method for Analyzing the Stability of the Resting State for a Model of Pacemaker Cells Surrounded by Stable Cells
              R. Artebrant, A. Tveito and G. T. Lines
              Mathematical Biosciences and Engineering, vol. 7, pp. 505—526, 2010
            7. Existence of Excitation Waves for a Collection of Cardiomyocytes Electrically Coupled to Fibroblasts
              A. Tveito, G. T. Lines, R. Artebrant, O. Skavhaug and M. Maleckar
              Mathematical Biosciences, vol. 230, pp. 79—86, 2011, [DOI]
            8. Computing the Stability of Steady-State Solutions of Mathematical Models of the Electrical Activity in the Heart
              A. Tveito, O. Skavhaug, G. T. Lines and R. Artebrant
              Mathematical Biosciences and Engineering, vol. 41, pp. 611—618, 2011, [DOI]
            9. Stability of Two Time-Integrators for the Aliev-Panfilov System
              M. Hanslien, R. Artebrant, A. Tveito, G. T. Lines and X. Cai
              International Journal of Numerical Analysis and Modeling, vol. 8, pp. 427—442, 2011

            Refereed Proceedings

            1. Locally Divergence-Preserving Schemes of Higher Order
              R. Artebrant
              in PAMM, Proceedings in Applied Mathematics and Mechanics, 2007

            Scott Baden

              Articles in International Journals

              1. Accelerating a 3D Finite-Difference Earthquake Simulation With a C-to-CUDA Translator
                D. Unat, J. Zhou, Y. Cui, S. Baden and X. Cai
                Computing in Science & Engineering, vol. 14, pp. 48—59, 2012, [DOI]
              2. Modeling and Predicting Performance of High Performance Computing Applications on Hardware Accelerators
                M. R. Meswani, L. Carrington, D. Unat, A. Snavely, S. Baden and S. Poole
                International Journal of High Performance Computing Applications, vol. 27, pp. 89—108, 2013, [DOI]
              3. Scalable heterogeneous CPU-GPU computations for unstructured tetrahedral meshes
                J. Langguth, M. Sourouri, G. T. Lines, S. Baden and X. Cai
                IEEE Micro, vol. 35, pp. 6—15, 2015, [DOI]
              4. Panda: A Compiler Framework for Concurrent CPU+GPU Execution of 3D Stencil Computations on GPU-accelerated Supercomputers
                M. Sourouri, S. Baden and X. Cai
                International Journal of Parallel Programming, 2016, [DOI]

              Refereed Proceedings

              1. Source-to-Source Optimization of CUDA C for GPU Accelerated Cardiac Cell Modeling
                F. V. Lionetti, A. D. McCulloch and S. Baden
                in Proceedings of Euro-Par 2010, 2010
              2. Mint: Realizing CUDA Performance in 3D Stencil Methods With Annotated C
                D. Unat, X. Cai and S. Baden
                in Proceedings of the 25th International Conference on Supercomputing (ICS'11), 2011
              3. Auto-Optimization of a Feature Selection Algorithm
                D. Unat, H. S. Kim, J. P. Schulze and S. Baden
                in Proceedings of the 4th Workshop on Emerging Applications and Many-core Architecture, 2011
              4. Modeling and Predicting Performance of High Performance Computing Applications on Hardware Accelerators
                M. Mitesh, L. Carrington, D. Unat, A. Snavely, S. Baden and S. Poole
                in Proceedings of IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012
              5. Effective Multi-GPU Communication Using Multiple CUDA Streams and Threads
                M. Sourouri, T. Gillberg, S. Baden and X. Cai
                in 20th International Conference on Parallel and Distributed Systems (ICPADS 2014), 2014
              6. CPU+GPU Programming of Stencil Computations for Resource-Efficient Use of GPU Clusters
                M. Sourouri, J. Langguth, F. Spiga, S. Baden and X. Cai
                in IEEE 18th International Conference on Computational Science and Engineering, 2015

              Conference Proceedings

              1. GPU Accelerated Solvers for ODEs Describing Cardiac Membrane Equations
                F. V. Lionetti, A. D. McCulloch and S. Baden
                in Proceeding of the GPU technology Conference, 2009
              2. GPU Accelerated Electrophysiology Simulations
                F. V. Lionetti, A. D. McCulloch and S. Baden
                in Proceedings of the 2009 ACM/IEEE Conference on supercomputing (SC 2009), 2009

              Talks

              1. Overcoming Obstacles With Graph Based Programming Models
                S. Baden
                Talk at CBC Workshop on Biomedical Computing, Simula, 2007
              2. A Data Centric View of Scientific Computing
                S. Baden
                Talk at CBC Workshop on Biomedical Computing, 2007
              3. A Sustainable Software Ecosystem
                S. Baden
                Talk at CBC Workshop on High-Performance and Parallel Computing, 2007
              4. Optimizations of Common Scientific Kernels on GPU
                D. Unat and S. Baden
                Poster presented at the Early Adopters PhD Workshop: Building the Next Generation of Application Scientists, Supercomputing Conference 2009, Portland, OR, USA, 2009
              5. GPU Accelerated Electrophysiology Simulations.
                F. V. Lionetti, A. D. McCulloch and S. Baden
                Talk, Poster at GPU Technology conference, San Jose, California, 2009
              6. GPU Accelerated Electrophysiology Simulations
                F. V. Lionetti, A. D. McCulloch and S. Baden
                Talk, poster at the 2009 ACM/IEEE Conference on Supercomputing (SC 2009), 2009
              7. Detailed Numerical Analyses of the Aliev-Panfilov Model on GPGPU
                X. Cai, D. Unat and S. Baden
                Talk at PARA2010 Conference, 2010
              8. Introduction to Programming a GPU With CUDA and a Case Study: Accelerating Stencil Computation With GPUs
                D. Unat and S. Baden
                2010
              9. Optimizing the Aliev-Panfilov Model of Cardiac Excitation on Heterogeneous Systems
                D. Unat, X. Cai and S. Baden
                Talk at Para 2010: State of the Art in Scientific and Parallel Computing in Reykjavik on June 6-9, 2010, 2010
              10. Technological Disruption: Opportunities for Change
                S. Baden
                International FEniCS'10 workshop, KTH, Stockholm, 2010
              11. GPUs: Supercomputers for All, Opportunities and Folklore
                S. Baden
                Talk at PDC/CSC, KTH, Stockholm, 2010
              12. GPUs: Supercomputers for All, Opportunities and Folklore
                S. Baden
                Talk at Section for Scientific Computing, Technical University of Denmark, 2010
              13. Mint: a User-Friendly C-to-CUDA Code Translator
                X. Cai, D. Unat and S. Baden
                Talk given at SIAM CSE'13, February 25, 2013
              14. Computing at a Million Mobiles Per Second
                S. Baden
                National University of Defense Technology, Changsha, China, 2013
              15. Computing at a Million Laptops Per Second
                S. Baden
                21st High Performance Computing Symposia, San Diego, 2013
              16. Computing at a Million of Mobiles Per Second
                S. Baden
                Rutgers University, 2014
              17. Embedded domain specific languages: How everyone can be an expert performance programmer
                S. Baden
                Stony Brook University, Dept of Biomedical Informatics, 2014
              18. Engineering for High Performance through Domain Specific Translations
                S. Baden
                Royal Institute of Technology, Stockholm, Sweden, 2014
              19. Engineering for High Performance through Domain Specific Translations
                S. Baden
                Computer Science Department, University in Uppsala, 2014

              Gabriel Balaban

                Articles in International Journals

                1. Adjoint Multi-Start Based Estimation of Cardiac Hyperelastic Material Parameters using Shear Data
                  G. Balaban, M. S. Alnæs, J. Sundnes and M. E. Rognes
                  Biomechanics and Modeling in Mechanobiology, pp. 1—13, 2016
                2. High resolution data assimilation of cardiac mechanics
                  G. Balaban, H. Finsberg, H. H. Odland, M. E. Rognes, S. Ross, J. Sundnes and S. Wall
                  International journal for numerical methods in biomedical engineering, 2017, [DOI]

                Refereed Proceedings

                1. A Newton Method for Fluid-Structure Interaction Using Full Jacobians Based on Automatic Form Differentiation
                  G. Balaban, A. Logg and M. E. Rognes
                  in 6th European Congress on Computational Methods in Applied Sciences and Engineering, ECCOMAS 2012, 2012
                2. Personalized Cardiac Mechanical Model using a High Resolution Contraction Field
                  H. Finsberg, G. Balaban, J. Sundnes, M. E. Rognes, H.-H. Odland, S. Ross and S. Wall
                  in VPH16 Translating VPH to the Clinic, 2016

                Conference Proceedings

                1. Least Squares Fitting of a Cardiac Hyperelasticity Model Using an Automatically Derived Adjoint Equation
                  G. Balaban, J. Sundnes, M. S. Alnæs and M. E. Rognes
                  in Proceedings of NSCM-27: the 27th Nordic Seminar on Computational Mechanics, 2014
                2. A Computational Method for Determining Left Ventricular Diastolic Fiber Strain Relative to a Zero Pressure Geometry
                  G. Balaban and S. Wall
                  in USART Workshop, 2015
                3. Personalization of a Cardiac Compuational Model using Clinical Measurements
                  H. Finsberg, G. Balaban, J. Sundnes, M. E. Rognes and S. Wall
                  in 28th Nordic Seminar on Computational Mechanics, 2015
                4. Optimization of a Spatially Varying Cardiac Contraction parameter using the Adjoint Method
                  H. Finsberg, G. Balaban, M. E. Rognes, J. Sundnes and S. Wall
                  in FEniCS'16, 2016

                Theses

                1. Adjoint Data Assimilation Methods for Cardiac Mechanics
                  G. Balaban
                  Ph.D. Thesis, University of Oslo, 2017

                Talks

                1. Automatic Differentiation of a Fluid-Structure Interaction Problem
                  G. Balaban
                  FEniCS'13 workshop, Cambridge, 2013
                2. Passive Cardiac Mechanics Calibration Using Reduced Order Unscented Kalman Filtering
                  G. Balaban
                  Presentation at the Uppsala-Simula Scientific Computing Seminar, 2014
                3. Patient Constrained Ventricular Stress Mapping
                  G. Balaban and H. Finsberg
                  Lugano Switzerland, 2015
                4. Identifying the Parameters of the Heart: Variational Data Assimilation in Cardiac Mechanics Using Dolfin-Adjoint
                  M. E. Rognes, G. Balaban, J. Sundnes and M. S. Alnæs
                  FEniCS '15, Imperial College London, UK, 2015
                5. Optimal Elasticity and Contraction in the Cardiac Cycle
                  G. Balaban
                  Oslo, Simula Research Laboratory, 2015
                6. Dyssynchronous Left Ventricular Stress Estimation
                  G. Balaban
                  Workshop on Advanced Numerical Techniques in Biomedical Computing: Simula Research Laboratory, 2015

                Posters

                1. Patient Specific Modeling of Cardiac Mechanics using the Active Strain Formulation
                  H. Finsberg, G. Balaban, S. Wall, J. Sundnes and M. E. Rognes
                  Geilo Winter School, 2016

                Aslak Bergersen

                  Refereed Proceedings

                  1. Implementation, verification and validation of large eddy simulation models in Oasis
                    J. Bø, A. Bergersen, K. Valen-Sendstad and M. Mortensen
                    in MekIT'15 8th National Conference on Computational Mechanics, 2015
                  2. The Oasis Navier-Stokes Solver: Theory, Accuracy, Applications, and High-Performance Computing Capabilities.
                    A. Bergersen, K. Valen-Sendstad and M. Mortensen
                    in FEniCS 16, 2016
                  3. The FDA Nozzle Benchmark: In Theory There Is No Difference Between Theory and Practice, but in Practice There Is.
                    A. Bergersen, M. Mortensen and K. Valen-Sendstad
                    in American Society of Mechanical Engineers Summer Biomechanics, Bioengineering and Biotransport Conference, 2016
                  4. An Objective Framework for Digital Removal of Bifurcation Aneurysms - Incremental Improvements?
                    A. Bergersen, C. Chnafa, D. Gallo, M. Piccinelli and K. Valen-Sendstad
                    in 11th International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, 2016
                  5. Inconsistency Is the Only Thing in Which Men Are Consistent: Can Subtle Flow Rate Assumptions Have Large Implications?
                    A. Bergersen and K. Valen-Sendstad
                    in 11th International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, 2016
                  6. Can Manipulation of Arterial Morphology Shed Light on the Mechanobiological Stimuli Behind Aneurysm Initiation?
                    A. Bergersen, J. Jimenez and K. Valen-Sendstad
                    in 11th International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, 2016
                  7. A Benchmark Standard Model of a Generic Medical Device; All Models Are Wrong, but Some Are Useful.
                    A. Bergersen, M. Mortensen and K. Valen-Sendstad
                    in 11th International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, 2016

                  Talks

                  1. Implementation, verification and validation of large eddy simulation models in Oasis
                    J. Bø, A. Bergersen, K. Valen-Sendstad and M. Mortensen
                    MekIT - Conference on Computational Mechanics - NTNU, Trondheim, Norway, 2015

                  Anna Blechingberg

                    Talks

                    1. The Baby Justicia Project: Biomechanical Investigations of the Shaken Baby Syndrome (SBS)
                      A. Blechingberg, K.-A. Mardal, F. Strisland, J. Sundnes, T. O. Rognum, Å. Vege, M. Weensvangen and A. Stray-Pedersen
                      WCB2010, Seminar session, Head/Brain Injury - Models, 2010
                    2. Computational Simulations of the Shaken Baby Syndrom - History and Challenges
                      A. Blechingberg
                      AC/DC seminar series, 2010

                    Rolv Erlend Bredesen

                      Refereed Proceedings

                      1. Benchmark of a Tsunami Run-Up Code
                        R. E. Bredesen, H. P. Langtangen and G. Pedersen
                        in MekIT'07. Fourth National Conference on Computational Mechanics, 2007

                      Talks

                      1. Benchmark of a Tsunami Run-Up Code
                        R. E. Bredesen, G. Pedersen and H. P. Langtangen
                        Talk at the MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, Norway, 2007
                      2. Stochastic Variation of Tsunami Run-Ups Due to Heterogenous Slip on Reverse Faults
                        F. Løvholt, S. Bazin, R. E. Bredesen, C. B. Harbitz, D. Kohn and H. Bungum
                        Poster at the 7th EGU General Assembly, Geophysical Research Abstracts (European Geoscience Union), Copernicus, 2010

                      Are Magnus Bruaset

                        Articles in International Journals

                        1. A Lumped Particle Modeling Framework for Simulating Particle Transport in Fluids
                          O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                          Communications in Computational Physics, vol. 8, pp. 115—142, 2010
                        2. Particle Collisions in a Lumped Particle Model
                          O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                          Communications in Computational Physics, vol. 10, pp. 823—843, 2011, [DOI]
                        3. Accuracy and Efficiency of Stencils for the Eikonal Equation in Earth Modelling
                          T. Gillberg, Ø. Hjelle and A. M. Bruaset
                          Computational Geosciences, vol. 16, pp. 933—952, 2012, [DOI]

                        Edited Books

                        1. Simula Research Laboratory - by Thinking Constantly About It
                          A. Tveito, A. M. Bruaset and O. Lysne
                          Springer, 2009
                        2. Conversations About Challenges in Computing
                          A. M. Bruaset and A. Tveito
                          Springer, 2013

                        Chapters in Books

                        1. Turning Rocks Into Knowledge - Experiences and Results From an Industrial Collaboration in Computational Geosciences
                          A. M. Bruaset
                          in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 553—600, 2009

                        Refereed Proceedings

                        1. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow and Heat Transfer in Sedimentary Basins
                          J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                          in MekIT'07. Fourth National Conference on Computational Mechanics, 2007
                        2. Lattice Boltzmann Method and Turbidity Flow Modeling
                          O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                          in MekIT'07 : Fourth National Conference in Computational Mechanics, 2007
                        3. Teaching PhD Students Effective Communication of Scientific Research
                          A. M. Bruaset, M. M. Sundet, M. Alley, M. D. Marshall and S. E. Zappe
                          in ICERI2009 Proceedings CD, 2009
                        4. A Flexible Stochastic Approach to Constraining Uncertainty in Forward Stratigraphic Models
                          S. Clark, A. M. Bruaset, T. O. Sømme and T. M. Løseth
                          in 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 2009
                        5. Development of a National Workshop to Teach Norwegian Ph.D. Students in Engineering and Science How to Communicate Research
                          M. Alley, A. M. Bruaset, M. D. Marshall, M. M. Sundet and S. Zappe
                          in 2009 ASEE Annual Conference & Exposition, 2009
                        6. A Parallel 3D Front Propagation Algorithm for Simulation of Geological Folding on GPUs
                          T. Gillberg, Ø. Hjelle and A. M. Bruaset
                          in EAGE 74th Conference & Exhibition, Copenhagen, 2012

                        Technical Reports

                        1. PhD: Simulation of Deformation and Heat Flow in Sedimentary Basins
                          J. B. Haga, H. Osnes, H. P. Langtangen and A. M. Bruaset
                          Simula, 2007
                        2. Extrapolation From a Very Low Number of Computer Experiments
                          R. Lorentzen, Ø. Hjelle, H. P. Langtangen and A. M. Bruaset
                          Simula Research Laboratory, 2010
                        3. Parallel Solvers for Static Hamilton-Jacobi Equations in Three Dimensions
                          T. Gillberg, A. M. Bruaset, M. Sourouri and Ø. Hjelle
                          Simula Research Laboratory, 2013

                        Talks

                        1. Lattice Boltzmann Method and Turbidity Flow Modeling
                          O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                          Talk at MekIT'07: Fourth National Conference on Computational Mechanics, 2007
                        2. By Thinking Constantly About It - Scientific Computing in Simula
                          A. M. Bruaset
                          Invited talk at College of Engineering, Pennsylvania State University, 2007
                        3. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow, and Heat Transport in Porous Geological Formations
                          J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                          Talk at the Fourth National Conference on Computational Mechanics (MekIT'07), Trondheim, Norway, 2007
                        4. Particle-Based Methods in the Modelling of Turbidity Currents and Turbidites
                          O. Al-Khayat, T. M. Løseth, A. M. Bruaset and H. P. Langtangen
                          Talk at the 33rd IGC Congress in Oslo, 2008
                        5. Numerical Modeling of Turbidity Flow With the Lattice Boltzmann Method
                          O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                          Talk at the Computational Geoscience workshop, 2008
                        6. A Coupled Lattice Boltzmann Model for a Turbulent Sand-Laden Fluid Flow
                          O. Al-Khayat, H. P. Langtangen and A. M. Bruaset
                          Talk at the DSFD conference in Brazil, 2008
                        7. Numerical Python
                          H. P. Langtangen, O. Al-Khayat and A. M. Bruaset
                          Four day course at the University of Erlangen, 2008
                        8. Handling Uncertainty in Numerical Models of Sedimentary Deposition: a Stochastic Approach
                          S. Clark, A. M. Bruaset and T. M. Løseth
                          Talk given at the 33rd International Geological Congress, 2008

                        Posters

                        1. Parallel Simulation of Dual Lithology Sedimentation
                          W. Wei, S. Clark, X. Cai and A. M. Bruaset
                          2009

                        Xing Cai

                          Articles in International Journals

                          1. A Unified Framework of Multi-Objective Cost Functions for Partitioning Unstructured Finite Element Meshes
                            X. Cai and N. Bouhmala
                            Applied Mathematical Modelling, vol. 31, pp. 1711—1728, 2007
                          2. An Order Optimal Solver for the Discretized Bidomain Equations
                            K.-A. Mardal, B. F. Nielsen, X. Cai and A. Tveito
                            Numerical Linear Algebra with Applications, vol. 14, pp. 83—98, 2007
                          3. On the Possibility for Computing the Transmembrane Potential in the Heart With a One Shot Method; an Inverse Problem
                            B. F. Nielsen, X. Cai and O. M. Lysaker
                            Mathematical Biosciences, vol. 210, pp. 523—553, 2007
                          4. A Note on the Efficiency of the Conjugate Gradient Method for a Class of Time-Dependent Problems
                            X. Cai, B. F. Nielsen and A. Tveito
                            Numerical Linear Algebra with Applications, vol. 14, pp. 459—467, 2007
                          5. A View Toward the Future of Subsurface Characterization: CAT Scanning Groundwater Basins
                            J. T. C. Yeh, C.-H. Lee, K.-C. Hsu, W. A. Illman, W. Barrash, X. Cai, J. Daniels, E. Sudicky, L. Wan, G. Li and C. L. Winter
                            Water Resources Research, vol. 44, 2008, [DOI]
                          6. A Study on Modified Szabo's Wave Equation Modeling of Frequency-Dependent Dissipation in Ultrasonic Medical Imaging
                            W. Chen, X. Zhang and X. Cai
                            Physica Scripta, vol. 2009, pp. 014014, 2009, [DOI]
                          7. A Multilevel Approach for the Satisfiability Problem
                            N. Bouhmala and X. Cai
                            ISAST Transactions on Computers and Intelligent Systems, vol. 1, pp. 29—37, 2009
                          8. Analysis of Tracer Tomography Using Temporal Moments of Tracer Breakthrough Curves
                            J. Zhu, X. Cai and J. T. C. Yeh
                            Advances in Water Resources, vol. 32, pp. 391—400, 2009, [DOI]
                          9. Simplifying the Parallelization of Scientific Codes by a Function-Centric Approach in Python
                            J. K. Nilsen, X. Cai, B. Høyland and H. P. Langtangen
                            Computational Science & Discovery, vol. 3, pp. 015003, 2010, [DOI]
                          10. Computational Modeling of the Initiation and Development of Spontaneous Intracellular Ca2+ Waves in Ventricular Myocytes
                            P. Li, W. Wei, X. Cai, C. Soeller, M. Cannell and A. V. Holden
                            Philosophical Transactions of the Royal Society A, vol. 368, pp. 3953—3965, 2010, [DOI]
                          11. Stability of Two Time-Integrators for the Aliev-Panfilov System
                            M. Hanslien, R. Artebrant, A. Tveito, G. T. Lines and X. Cai
                            International Journal of Numerical Analysis and Modeling, vol. 8, pp. 427—442, 2011
                          12. Accelerating a 3D Finite-Difference Earthquake Simulation With a C-to-CUDA Translator
                            D. Unat, J. Zhou, Y. Cui, S. Baden and X. Cai
                            Computing in Science & Engineering, vol. 14, pp. 48—59, 2012, [DOI]
                          13. Resource-Efficient Utilization of CPU/GPU-Based Heterogeneous Supercomputers for Bayesian Phylogenetic Inference
                            J. Chai, H. Su, M. Wen, X. Cai, N. Wu and C. Zhang
                            The Journal of Supercomputing, vol. 66, pp. 364—380, 2013, [DOI]
                          14. Balancing Efficiency and Accuracy for Sediment Transport Simulations
                            W. Wei, S. Clark, H. Su, M. Wen and X. Cai
                            Computational Science & Discovery, vol. 6, pp. 015011, 2013, [DOI]
                          15. Performance Modeling of Serial and Parallel Implementations of the Fractional Adams-Bashforth-Moulton Method
                            W. Zhang, W. Wei and X. Cai
                            Fractional Calculus and Applied Analysis, vol. 17, pp. 617—637, 2014
                          16. High Efficient Sedimentary Basin Simulations on Hybrid CPU-GPU Clusters
                            M. Wen, H. Su, W. Wei, N. Wu, X. Cai and C. Zhang
                            Cluster Computing, vol. 17, pp. 359—369, 2014, [DOI]
                          17. Time-Fractional Heat Equations and Negative Absolute Temperatures
                            W. Zhang, X. Cai and S. Holm
                            Computers & Mathematics with Applications, vol. 67, pp. 164—171, 2014, [DOI]
                          18. Parallel performance modeling of irregular applications in cell-centered finite volume methods over unstructured tetrahedral meshes
                            J. Langguth, N. Wu, J. Chai and X. Cai
                            Journal of Parallel and Distributed Computing, vol. 76, pp. 120—131, 2015, [DOI]
                          19. Communication-Hiding Programming for Clusters with Multi-Coprocessor Nodes
                            X. Dong, M. Wen, J. Chai, X. Cai, M. Zhao and C. Zhang
                            Concurrency and Computation: Practice and Experience, vol. 27, pp. 4172–4185, 2015, [DOI]
                          20. Enabling a Uniform OpenCL Device View for Heterogeneous Platforms
                            D. Huang, C. Xun, N. Wu, M. Wen, C. Zhang, X. Cai and Q. Yang
                            IEICE Transactions on Information and Systems, vol. E98-D, pp. 812—823, 2015, [DOI]
                          21. Towards Simulation of Subcellular Calcium Dynamics at Nanometre Resolution
                            J. Chai, J. E. Hake, N. Wu, M. Wen, X. Cai, G. T. Lines, J. Yang, H. Su, C. Zhang and X. Liao
                            International Journal of High Performance Computing Applications, vol. 29, pp. 51—63, 2015, [DOI]
                          22. An Analytical GPU Performance Model for 3D Stencil Computations from the Angle of Data Traffic
                            H. Su, X. Cai, M. Wen and C. Zhang
                            The Journal of Supercomputing, vol. 71, pp. 2433—2453, 2015, [DOI]
                          23. Scalable heterogeneous CPU-GPU computations for unstructured tetrahedral meshes
                            J. Langguth, M. Sourouri, G. T. Lines, S. Baden and X. Cai
                            IEEE Micro, vol. 35, pp. 6—15, 2015, [DOI]
                          24. Solving 3D Time-Fractional Diffusion Equations by High-Performance Parallel Computing
                            W. Zhang and X. Cai
                            Fractional Calculus and Applied Analysis, vol. 19, pp. 140—160, 2016, [DOI]
                          25. Accelerating Detailed Tissue-Scale 3D Cardiac Simulations Using Heterogeneous CPU-Xeon Phi Computing
                            J. Langguth, Q. Lan, N. Gaur and X. Cai
                            International Journal of Parallel Programming, pp. 1—23, 2016, [DOI]
                          26. Panda: A Compiler Framework for Concurrent CPU+GPU Execution of 3D Stencil Computations on GPU-accelerated Supercomputers
                            M. Sourouri, S. Baden and X. Cai
                            International Journal of Parallel Programming, 2016, [DOI]

                          Books

                          1. Elements of Scientific Computing
                            A. Tveito, H. P. Langtangen, B. F. Nielsen and X. Cai
                            Springer, 2010

                          Edited Books

                          1. Quantitative Information Fusion for Hydrological Sciences
                            X. Cai and J. T. C. Yeh
                            Springer, 2008

                          Chapters in Books

                          1. A Multilevel Greedy Algorithm for the Satisfiability Problem
                            N. Bouhmala and X. Cai
                            in Advances in Greedy Algorithms, Edited by W. Bednorz, IN-TECH Education and Publishing, pp. 39—54, 2008
                          2. Past and Future Perspectives on Scientific Software
                            A. Logg, H. P. Langtangen and X. Cai
                            in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 321—362, 2009
                          3. Parallel Computing Engines for Subsurface Imaging Technologies
                            J. T. C. Yeh, X. Cai, H. P. Langtangen, J. Zhu and C.-F. Ni
                            in Advanced Computational Infrastructures for Parallel and Distributed Adaptive Applications, Edited by M. Parashar and X. Li, Wiley, pp. 29—43, 2010
                          4. Parallel Computing
                            X. Cai
                            in Encyclopedia of Applied and Computational Mathematics, Edited by B. Engquist, Springer Berlin Heidelberg, pp. 1129—1132, 2015

                          Refereed Proceedings

                          1. Making Hybrid Tsunami Simulators in a Parallel Software Framework
                            X. Cai and H. P. Langtangen
                            in International Workshop on Applied Parallel Computing (PARA'06), 2007
                          2. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow and Heat Transfer in Sedimentary Basins
                            J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                            in MekIT'07. Fourth National Conference on Computational Mechanics, 2007
                          3. On the Efficiency of Python for High-Performance Computing: a Case Study Involving Stencil Updates for Partial Differential Equations
                            H. P. Langtangen and X. Cai
                            in Modeling, Simulation and Optimization of Complex Processes, 2008
                          4. Evolution of Intracellular Ca2+ Waves From About 10,000 RyR Clusters: Towards Solving a Computationally Daunting Task
                            P. Li, W. Wei, X. Cai, C. Soeller, M. Cannell and A. V. Holden
                            in The Fifth International Conference on Functional Imaging and Modeling of the Heart, 2009
                          5. Numerical Analysis of a Dual-Sediment Transport Model Applied to Lake Okeechobee, Florida
                            S. Clark, W. Wei and X. Cai
                            in Proceedings of the 2010 Ninth International Symposium on Parallel and Distributed Computing, 2010
                          6. Mint: Realizing CUDA Performance in 3D Stencil Methods With Annotated C
                            D. Unat, X. Cai and S. Baden
                            in Proceedings of the 25th International Conference on Supercomputing (ICS'11), 2011
                          7. A New Parallel 3D Front Propagation Algorithm for Fast Simulation of Geological Folds
                            T. Gillberg, M. Sourouri and X. Cai
                            in The International Conference on Computational Science, ICCS 2012, 2012
                          8. Performance of Sediment Transport Simulations on NVIDIA's Kepler Architecture
                            H. Su, N. Wu, M. Wen, C. Zhang and X. Cai
                            in The International Conference on Computational Science, ICCS 2013, 2013
                          9. Automated Transformation of GPU-Specific OpenCL Kernels Targeting Performance Portability on Multi-Core/Many-Core CPUs
                            D. Huang, M. Wen, C. Xun, D. Chen, X. Cai, Y. Qiao, N. Wu and C. Zhang
                            in Proceedings of Euro-Par 2014, 2014
                          10. Utilizing Multiple Xeon Phi Coprocessors on One Compute Node
                            X. Dong, J. Chai, J. Yang, M. Wen, N. Wu, X. Cai, C. Zhang and Z. Chen
                            in International Conference on Algorithms and Architectures for Parallel Processing, 2014
                          11. Effective Multi-GPU Communication Using Multiple CUDA Streams and Threads
                            M. Sourouri, T. Gillberg, S. Baden and X. Cai
                            in 20th International Conference on Parallel and Distributed Systems (ICPADS 2014), 2014
                          12. Heterogeneous CPU-GPU Computing for the Finite Volume Method on 3D Unstructured Meshes
                            J. Langguth and X. Cai
                            in 20th International Conference on Parallel and Distributed Systems (ICPADS 2014), 2014
                          13. CPU+GPU Programming of Stencil Computations for Resource-Efficient Use of GPU Clusters
                            M. Sourouri, J. Langguth, F. Spiga, S. Baden and X. Cai
                            in IEEE 18th International Conference on Computational Science and Engineering, 2015
                          14. Towards Detailed Tissue-Scale 3D Simulations of Electrical Activity and Calcium Handling in the Human Cardiac Ventricle
                            Q. Lan, N. Gaur, J. Langguth and X. Cai
                            in The 15th International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP 2015), 2015
                          15. On the Performance and Energy Efficiency of the PGAS Programming Model on Multicore Architectures
                            J. Lagravière, J. Langguth, M. Sourouri and X. Cai
                            in High Performance Computing & Simulation (2016) - International Workshop on Optimization of Energy Efficient HPC & Distributed Systems, 2016
                          16. Enabling Tissue-Scale Cardiac Simulations Using Heterogeneous Computing on Tianhe-2
                            J. Langguth, Q. Lan, N. Gaur, X. Cai and M. Wen
                            in IEEE 22nd International Conference on Parallel and Distributed Systems (ICPADS), 2016
                          17. Matlab2cpp: A Matlab-to-C++ code translator
                            G. Y. Paulsen, J. Feinberg, X. Cai and B. Nordmoen
                            in IEEE 2016 11th System of Systems Engineering Conference (SoSE), 2016

                          Technical Reports

                          1. Is PGAS ready for the challenge of energy efficiency? A study with the NAS benchmark.
                            J. Lagravière, P. H. Ha and X. Cai
                            UiT, 2015

                          Talks

                          1. On a Future Software Platform for Demanding Multi-Scale and Multi-Physics Problems
                            X. Cai and H. P. Langtangen
                            Talk at SIAM CSE07 Conference, Costa Mesa, CA, Feb. 19-23, 2007
                          2. Simulating Tsunami Propagation on Parallel Computers Using a Hybrid Software Framework
                            X. Cai
                            Guest lecture given at the University of Stuttgart, March 12, 2007
                          3. On Building Parallel Algorithms and Software for Hydraulic Tomography
                            X. Cai
                            Talk at SIAM GS2007 Conference, March 19-22, Santa Fe, New Mexico, USA, 2007
                          4. Building Hybrid Parallel PDE Software by Domain Decomposition and Object-Oriented Programming
                            X. Cai
                            Talk at the ICCM 2007 Conference, April 4-6, Hiroshima, Japan, 2007
                          5. Bridging the Gap Between Computational Scientists and HPC
                            X. Cai
                            Article published in Meta, Number 3, 2007
                          6. Making Parallel PDE Software by Object-Oriented Programming
                            X. Cai
                            Guest lecture given at Hohai University, China, May 17, 2007
                          7. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow, and Heat Transport in Porous Geological Formations
                            J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                            Talk at the Fourth National Conference on Computational Mechanics (MekIT'07), Trondheim, Norway, 2007
                          8. Parallel Computing; Why & How?
                            X. Cai
                            Lecture at the 2008 Winter School on Parallel Computing, Jan. 20-25, Geilo, Norway, 2008
                          9. High-Performance Computing on Distributed-Memory Architecture
                            X. Cai
                            Lecture at the 2008 Winter School on Parallel Computing, Jan. 20-25, Geilo, Norway, 2008
                          10. Simulation of Tsunami Propagation
                            X. Cai
                            Talk at the 2nd eScience Meeting, Jan. 21-22, Geilo, Norway, 2008
                          11. Use of Advanced Computing in Tomographic Surveys
                            X. Cai
                            Talk at PARA 2008, May 13-16, Trondheim, Norway, 2008
                          12. Resource-Efficient Simulation Of Tsunami Wave Propagation on Parallel Computers
                            X. Cai
                            Invited talk at 2nd Internationsal Symposium for Integrated Predictive Simulation System for Earthequake and Tsunami Disaster, October 21-22, Tokyo, Japan, 2008
                          13. Detailed Numerical Analyses of the Aliev-Panfilov Model on GPGPU
                            X. Cai, D. Unat and S. Baden
                            Talk at PARA2010 Conference, 2010
                          14. Optimizing the Aliev-Panfilov Model of Cardiac Excitation on Heterogeneous Systems
                            D. Unat, X. Cai and S. Baden
                            Talk at Para 2010: State of the Art in Scientific and Parallel Computing in Reykjavik on June 6-9, 2010, 2010
                          15. Parallel Programming Using Python
                            X. Cai
                            CBC Seminar on advanced use of Python programming language, 2010
                          16. A Function-Centric Generic Framework for Parallelization
                            X. Cai
                            Talk at CLS Workshop at UiO on April 13, 2011
                          17. Study of the Computational Efficiency for Different Usages of Pythoning
                            X. Cai
                            Talk at CLS Workshop at UiO on April 13, 2011
                          18. Efficient Computations of Initial-Value Problems Involving Fractional Derivatives
                            X. Cai and W. Zhang
                            Talk at the seminar on wave propagation in complex media, November 23, 2011
                          19. Parallel Simulation of Particle Transport Using OpenMP
                            X. Cai
                            Guest lecture at UCSD on January 31, 2011
                          20. Programming With OpenMP and Mixed MPI-OpenMP
                            X. Cai
                            Invited lecture at pre-conference workshop of NOTUR 2011, 2011
                          21. Programming With OpenMP and Mixed MPI-OpenMP
                            X. Cai
                            Invited lecture during USIT's Research Computing Services training week, November 14-17, 2011
                          22. Understanding the Performance of Stencil-Based Computations on Multicore CPU
                            X. Cai
                            CBC Seminar series, 2012
                          23. Some Perspectives on High-Performance Computing in the Geosciences
                            X. Cai
                            Computational Geoscience Workshop, Geilo, January 19, 2012
                          24. Elements of Scientific Computing
                            G. T. Lines and X. Cai
                            3-day intensive course given at National University of Defence Technology, China, October 16-18, 2012
                          25. Scientific Computing Needs Supercomputers, But Also Something Else!
                            X. Cai
                            Invited lecture at National University of Defence Technology, China, March 29, 2012
                          26. Mint: a User-Friendly C-to-CUDA Code Translator
                            X. Cai, D. Unat and S. Baden
                            Talk given at SIAM CSE'13, February 25, 2013
                          27. Scientific Computing on Accelerator-Based Supercomputers
                            X. Cai
                            Guest lecture at FFI, September 20, 2013
                          28. Adopting Heterogeneous Hardware Platforms for Scientific Computing
                            X. Cai
                            Guest lecture at Technical Unviersity of Denmark, December 5, 2013
                          29. Introduction to Scientific Writing
                            X. Cai
                            Intensive course given at National University of Defence Technology, China, October 17-19, 2013
                          30. Arrhythmogenic Mechanisms and Therapeutic Targets for Catecholaminergic Polymorphic Ventricular Tachycardia: A Simulation Study in a Human Ventricular Myocyte
                            N. Gaur, X. Cai and Y. Rudy
                            Simula Research Laboratory, 2014
                          31. Mathematical Modeling of Ca Handling and Computational Studies of Ca-related Arrhythmogenesis in Heart
                            N. Gaur, X. Cai and Y. Rudy
                            National University of Defense Technology, China, 2014
                          32. Heterogeneous Manycore Simulations in Cardiac Electrophysiology
                            J. Langguth, X. Cai and J. Chai
                            Tenth International Workshop on Programmability and Architectures for Heterogeneous Multicores (MULTIPROG-2017), Stockholm, Sweden, 2017

                          Posters

                          1. Parallel Simulation of Dual Lithology Sedimentation
                            W. Wei, S. Clark, X. Cai and A. M. Bruaset
                            2009
                          2. Spontaneous Ca2+ Release and Ca2+ Waves Underlie Early and Delayed Afterdepolarizations, and Triggered Activity, in Ryanodine Receptor Mutations Associated With Catecholaminergic Polymorphic Ventricular Tachycardia
                            N. Gaur, X. Cai and Y. Rudy
                            2014
                          3. Cellular Arrhythmogenesis in CPVT in a Computational Model of Cardiac Ventricular Myocyte
                            N. Gaur, X. Cai and Y. Rudy
                            2014
                          4. Spontaneous Ca2+ Release and Ca2+ Waves Underlie Early and Delayed Afterdepolarizations, and Triggered Activity in Ryanodine Receptor Mutation associated with Catecholaminergic Polymorphic Ventricular Tachycardia
                            N. Gaur, X. Cai and Y. Rudy
                            2014
                          5. Cellular Arrhythmogenesis in CPVT in a computational model of cardiac ventricular myocyte
                            N. Gaur, X. Cai and Y. Rudy
                            2014

                          Public Outreach

                          1. Simulating Basin Evolution on GPU-Enhanced Hybrid Supercomputers
                            X. Cai and M. Wen
                            2012
                          2. Supercomputing-Enabled Study of Subcellular Calcium Dynamics
                            X. Cai, J. E. Hake and G. T. Lines
                            2014

                          Stuart Clark

                            Articles in International Journals

                            1. Convection Models in the Kamchatka Region Using Imposed Plate Motion and Thermal Histories
                              S. Clark and D. Müller
                              Journal of Geodynamics, vol. 46, pp. 1—9, 2008
                            2. Episodicity in Back-Arc Tectonic Regimes
                              S. Clark, D. Stegman and D. Müller
                              Physics of the Earth and Planetary Interiors, vol. 171, pp. 265—279, 2008
                            3. Benchmarking FEniCS for Mantle Convection Simulations
                              L. Vynnytska, M. E. Rognes and S. Clark
                              Computers & Geosciences, vol. 50, pp. 95—105, 2013
                            4. Balancing Efficiency and Accuracy for Sediment Transport Simulations
                              W. Wei, S. Clark, H. Su, M. Wen and X. Cai
                              Computational Science & Discovery, vol. 6, pp. 015011, 2013, [DOI]

                            Chapters in Books

                            1. Dynamic Simulations of Convection in the Earth's Mantle
                              L. Vynnytska, S. Clark and M. E. Rognes
                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 587—602, 2012

                            Refereed Proceedings

                            1. Uncertainty Analysis of the Mechanics of the Heart
                              H. Osnes, S. Clark and J. Sundnes
                              in Proceedings of the Twenty Second Nordic Seminar on Computational Mechanics, 2009
                            2. A Flexible Stochastic Approach to Constraining Uncertainty in Forward Stratigraphic Models
                              S. Clark, A. M. Bruaset, T. O. Sømme and T. M. Løseth
                              in 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 2009
                            3. Numerical Analysis of a Dual-Sediment Transport Model Applied to Lake Okeechobee, Florida
                              S. Clark, W. Wei and X. Cai
                              in Proceedings of the 2010 Ninth International Symposium on Parallel and Distributed Computing, 2010
                            4. FEniCS Framework in Geoscientific Applications
                              L. Vynnytska and S. Clark
                              in The 19th International Congress on Modelling and Simulation (MODSIM2011), 2011
                            5. RoseDist: Generalized Tool for Simulating With Non-Standard Probability Distributions
                              J. Feinberg and S. Clark
                              in MODSIM2013, 20th International Congress on Modelling and Simulation, 2013

                            Talks

                            1. Lithospheric Modelling: Research Directions at Simula
                              S. Clark
                              Talk at the GeoMath08, workshop, Santa Fe, New Mexico, 2008
                            2. Geodynamics: the Physics and Mathematics of Terrestrial and Extra-Terrestrial Processes
                              S. Clark
                              Talk at the Center for Biomedical Computing Annual Meeting, 2008
                            3. Simulating and Visualising the Earth As a Dynamic System
                              S. Clark
                              Talk given to Valler High School Teachers, 2008
                            4. Handling Uncertainty in Numerical Models of Sedimentary Deposition: a Stochastic Approach
                              S. Clark, A. M. Bruaset and T. M. Løseth
                              Talk given at the 33rd International Geological Congress, 2008
                            5. Slabs in the Mantle - Dynamic Topography and Mantle Rheology in the South-Western Pacific
                              S. Clark, M. Gurnis and D. Müller
                              Talk given at the 33rd International Geological Congress, 2008
                            6. Microplate Modeling of the Afar Depression Using 4D Lithospheric Model (4DLM) and Splates: Implications for Development of Plate Boundaries
                              H. C. Bender, A. Thurmond, J. Skogseid and S. Clark
                              Talk given at Geological Society of America, 2010
                            7. An Inverse Approach to Stratigraphic Modelling
                              S. Clark, L. Vynnytska and A. Schroll
                              34th International Geological Congress, Brisbane, Australia, 2012
                            8. Flexible Finite Element Methods for Geodynamics
                              S. Clark
                              SIAM conference on Mathematical and Computational Issues in the Geosciences, June 17-20, 2013
                            9. Fast and accurate Solutions of the Eikonal and Transport Equations
                              M. Noack, T. Gillberg and S. Clark
                              Amsterdam, 2014

                            Posters

                            1. Parallel Simulation of Dual Lithology Sedimentation
                              W. Wei, S. Clark, X. Cai and A. M. Bruaset
                              2009
                            2. The Afar Region: Numerical Modeling Using Geological Data
                              L. Vynnytska, D. Stegman and S. Clark
                              2012
                            3. Testing the Linkage Between the Galapagos Hotspot and the Caribbean Large Igneous Province (CLIP) Based on a Globally Consistent Plate Kinematic Model
                              R. Nerlich, S. Clark and H.-P. Bunge
                              EGU General Assembly 2013, 2013

                            Sigrid Kaarstad Dahl

                              Articles in International Journals

                              1. Impact of Pulmonary Venous Locations on the Intra-Atrial Flow and Mitral Plane Velocity Profile
                                S. K. Dahl, E. Thomassen, L. R. Hellevik and B. H. Skallerud
                                Cardiovascular Engineering and Technology, vol. 3, pp. 2069—281, 2012
                              2. FSI-Simulation of Asymmetric Mitral Valve Dynamics During Diastolic Filling
                                S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, L. R. Hellevik and B. H. Skallerud
                                Computer Methods in Biomechanics and Biomedical Engineering, vol. 15, pp. 121—130, 2012
                              3. Application of a Strong FSI Coupling Scheme for the Numerical Simulation of Bileaflet Mechanical Heart Valve Dynamics: Study of Wall Shear Stress on the Leaflets
                                S. Annerel, J. Degroote, J. Vierendeels, T. Claessens, P. Van Ransbeeck, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Segers and P. Verdonck
                                Progress in Computational Fluid Dynamics, vol. 12, pp. 68—80, 2012
                              4. A Fast Strong Coupling Algorithm for the Partitioned Fluid-Structure Interaction Simulation of BMHVs
                                S. Annerel, J. Degroote, T. Claessens, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Van Ransbeeck, P. Seegers, P. Verdonck and J. Vierendeels
                                Computer Methods in Biomechanics and Biomedical Engineering, vol. 15, pp. 1281—1312, 2013

                              Refereed Proceedings

                              1. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
                                L. R. Hellevik, S. K. Dahl and B. H. Skallerud
                                in MekIT-07, Fourth national conference on Computational Mechanics, 2007
                              2. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
                                S. K. Dahl, L. R. Hellevik and B. H. Skallerud
                                in 8th world Congress on Computational Mechanics/5th European Congress on Computational Methods in Applied sciences and Engineering, Venice, Italy, 2008
                              3. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
                                S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
                                in MekIT'09. Fifth  national  conference  on  Computational  Mechanics, 2009
                              4. A Strong Coupling FSI Scheme for Simulating BMHV Dynamics
                                S. Annerel, J. Degroote, T. Claessens, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Van Ransbeeck, P. Segers, P. Verdonck and J. Vierendeels
                                in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011

                              Theses

                              1. Numerical Simulations of Blood Flow in the Left Side of the Heart
                                S. K. Dahl
                                Ph.D. Thesis, Norwegian University of Science and Technology, 2012

                              Talks

                              1. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
                                S. K. Dahl
                                Talk at CBC seminar on Biomechanics, Trondheim, November 15th, 2007
                              2. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
                                S. K. Dahl, L. R. Hellevik and B. H. Skallerud
                                Presented at 8th.World Congress on Computational Mechanics (WCCM8)/5th European Congress on Computational Methods in Applied Sciences and Engineeering (ECCOMAS 2008), Venice, Italy, 2008
                              3. Fluid-Structure Interaction Simulation of Mitral Valve Dynamics in a Subject-Specific Geometry During Diastolic Filling
                                S. K. Dahl
                                Invited talk at the MI-Lab seminar; Cardiac imaging and LV mechanics, Trondheim, Norway, November 10th, 2009
                              4. Fluid Structure Interaction With an User Defined Subroutine
                                S. K. Dahl
                                Invited talk at Fluent Users Group at SINTEF / NTNU, June 3rd, 2009
                              5. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
                                S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
                                Talk at MekIT'09, Trondheim, May 27th, 2009
                              6. Mitralklaffens Form I Systolen
                                S. K. Dahl
                                Presented at Rikshospitalet University Hospital, Oslo, Norway, March, 2010
                              7. Effect of Mitral Valve Shape on Flow Dynamics During Left Ventricular Contraction
                                S. K. Dahl and B. H. Skallerud
                                World Congress in Biomechanics, Singapore, 2010

                              Jørgen Schartum Dokken

                                Conference Proceedings

                                1. Shape Optimization with Multiple Meshes
                                  J. S. Dokken, S. W. Funke, A. Johansson and S. Schmidt
                                  in FEniCS Conference 2017, 2017

                                Talks

                                1. Optimization Problems on Dynamical Domains with Non-Matching Meshes
                                  J. S. Dokken
                                  29th Nordic Seminar on Computational mechanics, 2016
                                2. Automatic Adjoints of Multimesh Finite Element Discretisations
                                  S. W. Funke, J. S. Dokken, A. Johansson and S. Schmidt
                                  Atlanta, USA, 2017
                                3. Shape Optimization with Multiple Meshes
                                  J. S. Dokken, S. W. Funke, A. Johansson and S. Schmidt
                                  Luxenbourg, 2017
                                4. Shape Optimization with Multiple Meshes
                                  J. S. Dokken
                                  University of Luxembourg, 2017
                                5. Optimization Problems in Dynamical Domains with Unfitted Meshes
                                  S. W. Funke, J. S. Dokken, A. Johansson and S. Schmidt
                                  X-DMS 2017, Umeå, 2017

                                Ida Nordehaug Drøsdal

                                  Articles in International Journals

                                  1. Effect of the Central Canal in the Spinal Cord on Fluid Movement Within the Cord
                                    I. N. Drøsdal, K.-A. Mardal, K.-H. Støverud and V. Haughton
                                    The Neuroradiology Journal, vol. 26, pp. 585—590, 2013

                                  Refereed Proceedings

                                  1. Porous and Viscous Flow Modeling on the Study of Cyst Development in the Human Spinal Cord
                                    I. N. Drøsdal, V. Haughton, K.-A. Mardal and K.-H. Støverud
                                    in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011

                                  Talks

                                  1. Cerebrospinal Fluid Flow in the Upper Cervical Canal in Patients With the Chiari I Malformation
                                    K.-A. Mardal, K.-H. Støverud, V. Haughton, S. Linge, H. P. Langtangen, G. Rutkowska and I. N. Drøsdal
                                    1ST CSF Hydrodynamics Symposium, 2011

                                  Vinzenz Gregor Eck

                                    Articles in International Journals

                                    1. Stochastic sensitivity analysis for timing and amplitude of pressure waves in the arterial system
                                      V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                      International Journal for Numerical Methods in Biomedical Engineering, vol. 31, 2015, [DOI]
                                    2. A guide to uncertainty quantification and sensitivity analysis for cardiovascular applications
                                      V. G. Eck, W. P. Donders, J. Sturdy, J. Feinberg, T. Delhaas and L. R. Hellevik
                                      International Journal for Numerical Methods in Biomedical Engineering, vol. 32, 2016, [DOI]
                                    3. Effects of arterial wall models and measurement uncertainties on cardiovascular model predictions
                                      V. G. Eck, J. Sturdy and L. R. Hellevik
                                      Journal of Biomechanics, 2017, [DOI]
                                    4. Multivariate Polynomial Chaos Expansions with Dependent Variables
                                      J. Feinberg, V. G. Eck and H. P. Langtangen
                                      Accepted for publication in SIAM Journal on Scientific Computing, 2017

                                    Refereed Proceedings

                                    1. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                      V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                      in 4th International Conference on Computational and Mathematical Biomedical Engineering (CMBE), Paris, June 29-July 3, 2015
                                    2. Towards robust clinical assessment of arterial compliance
                                      J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                      in 28th Nordic Seminar on Computational Mechanics, 2015
                                    3. Uncertainty quantification of short term baroreflex regulation of blood pressure
                                      J. Sturdy, V. G. Eck and L. R. Hellevik
                                      in CMBE15, 4th International Conference on Computational & Mathematical Biomedical Engineering, 2015
                                    4. A Validation of Coupling Carotid and Aortic Baroreflex Models to a 1D Blood Flow Model of the Systemic Arterial Tree
                                      J. Sturdy, V. G. Eck and L. R. Hellevik
                                      in ICCB 2015, VI International Conference on Computational Bioengineering, 2015
                                    5. Uncertainty quantification and sensitivity analysis for wave propagation models of the arterial systemic circulation
                                      V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                      in ICCB 2015, VI International Conference on Computational Bioengineering, Barcelona, 2015, 2015

                                    Conference Proceedings

                                    1. Stochastic arterial flow simulations
                                      V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                      in Proceedings of the 27th Nordic Seminar on Computational Mechanics, 2014
                                    2. Effects of parametric uncertainty in blood flow simulations
                                      V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                      in Virtual Physiological Human Conference 2014, Trondheim, 2014

                                    Theses

                                    1. Uncertainty Quantification and Sensitivity Analysis for Cardiovascular Models
                                      V. G. Eck
                                      Ph.D. Thesis, 2016

                                    Talks

                                    1. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                      V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                      4th International Conference on Computational and Mathematical Biomedical Engineering, France, 2015
                                    2. Towards robust clinical assessment of arterial compliance
                                      J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                      28th Nordic Seminar on Computational Mechanics, 2015

                                    Gaute T. Einevoll

                                      Articles in International Journals

                                      1. An Evaluation of the Accuracy of Classical Models for Computing the Membrane Potential and Extracellular Potential for Neurons
                                        A. Tveito, K. H. Jæger, G. T. Lines, Ł. Paszkowski, J. Sundnes, A. Edwards, T. Mäki-Marttunen, G. Halnes and G. T. Einevoll
                                        Frontiers in Computational Neuroscience, vol. 11, pp. 27, 2017

                                      Chapters in Books

                                      1. Astrocytic Ion Dynamics: Implications for Potassium Buffering and Liquid Flow
                                        G. Halnes, K. H. Pettersen, L. Øyehaug, M. E. Rognes, E. A. Nagelhus and G. T. Einevoll
                                        in Computational Geoscience, Springer, 2017

                                      Ola Løseth Elvetun

                                        Articles in International Journals

                                        1. The Split Bregman Algorithm Applied to PDE-Constrained Optimization Problems With Total Variation Regularization
                                          O. L. Elvetun and B. F. Nielsen
                                          Computational Optimization and Applications, vol. 63, pp. 1—26, 2016
                                        2. PDE-constrained optimization with local control and boundary observations: Robust preconditioners
                                          O. L. Elvetun and B. F. Nielsen
                                          SIAM Journal on Scientific Computing, vol. 38, pp. A3461—A3491, 2016, [DOI]

                                        Theses

                                        1. PDE-constrained optimization: Preconditioners and diffuse domain methods
                                          O. L. Elvetun
                                          Ph.D. Thesis, Department of Mathematical Sciences and Technology Faculty of Environmental Science and Technology Norwegian University of Life Sciences, 2015

                                        Talks

                                        1. PDE-Constrained Optimization Problems With Box Constraints
                                          O. L. Elvetun and B. F. Nielsen
                                          International Conference on Preconditioning Techniques for Scientific and Industrial Applications, Oxford, 2013

                                        Posters

                                        1. PDE-Constrained Optimization Problems With Box Constraints; Effective Solution and Real World Applications
                                          O. L. Elvetun and B. F. Nielsen
                                          2013

                                        Øyvind Evju

                                          Articles in International Journals

                                          1. A Study of Wall Shear Stress in 12 Aneurysms With Respect to Different Viscosity Models and Flow Conditions
                                            Ø. Evju, K. Valen-Sendstad and K.-A. Mardal
                                            Journal of Biomechanics, vol. 46, pp. 2802—2808, 2013
                                          2. Robustness of common hemodynamics indicators with respect to numerical resolution in 38 middle cerebral artery aneurysms
                                            Ø. Evju, J. M. Pozo, A. Frangi and K.-A. Mardal
                                            Accepted for publication in PLOS ONE, 2016
                                          3. Variational data assimilation for transient blood flow simulations
                                            S. W. Funke, M. Nordaas, Ø. Evju, M. S. Alnæs and K.-A. Mardal
                                            Accepted for publication in International Journal for Numerical Methods in Biomedical Engineering, 2017
                                          4. Robustness of common hemodynamic indicators with respect to numerical resolution in 38 middle cerebral artery aneurysms.
                                            Ø. Evju, J. M. Pozo, A. Frangi and K.-A. Mardal
                                            PloS one, 2017
                                          5. Rupture prediction of cerebral aneurysms: a nation-wide matched case-control study of hemodynamics at time of diagnosis.
                                            T. Ø. Skodvin, Ø. Evju, C. A. Helland and J. G. Isaksen
                                            Accepted for publication in Journal of Neurosurgery, 2017

                                          Chapters in Books

                                          1. On the Assumption of Laminar Flow in Physiological Flows: Cerebral Aneurysms As an Illustrative Example
                                            Ø. Evju and K.-A. Mardal
                                            in Modeling the Heart and the Circulatory System, Edited by A. Quarteroni, Springer International Publishing, pp. 177—195, 2015

                                          Theses

                                          1. Computational hemodynamics in cerebral aneurysms: Robustness of rupture risk indicators under different model assumptions
                                            Ø. Evju
                                            Ph.D. Thesis, University of Oslo, 2017

                                          Talks

                                          1. Simulating Blood Flow in Cerebral Aneurysm
                                            K.-A. Mardal, K. Valen-Sendstad and Ø. Evju
                                            Minisymposium Numerical Methods for Biomedical Problems on Enumath, 2011
                                          2. Non-Newtonian Effects in Cerebral Aneurysms. a Computational Study on 12 Patient Specific Aneurysms
                                            Ø. Evju, K. Valen-Sendstad and K.-A. Mardal
                                            ICS '12, 2012
                                          3. Patient-Specific Simulations of Vasospasm in 3 Different Cases
                                            Ø. Evju, K.-A. Mardal, S. J. Bakke and A. G. Sorteberg
                                            Modelling Physiological Flows, 2013
                                          4. Variational data assimilation for blood flow simulations
                                            K.-A. Mardal, S. W. Funke, M. Nordaas, Ø. Evju and M. S. Alnæs
                                            MS at SIAM UQ, Zurich, 2016
                                          5. Robustness of common hemodynamics indicators with respect to numerical resolution in 38 middle cerebral artery aneurysms
                                            K.-A. Mardal, Ø. Evju, J. Soler and A. Frangi
                                            MS at WCCM16, Seoul, 2016

                                          Posters

                                          1. On Non-Newtonian Effects in Cerebral Aneurysms: a Computational Study on 12 Patient Specific Aneurysms
                                            Ø. Evju, K.-A. Mardal and K. Valen-Sendstad
                                            2012

                                          Patrick Emmet Farrell

                                            Articles in International Journals

                                            1. Modelling of Fluid-solid Interactions Using an Adaptive Mesh Fluid Model Coupled With a Combined Finite-discrete Element Model
                                              A. Viré, J. Xiang, F. Milthaler, P. E. Farrell, M. D. Piggott, J.-P. Latham, D. Pavlidis and C. C. Pain
                                              Ocean Dynamics, vol. 62, pp. 1487—1501, 2012
                                            2. Automated Derivation of the Adjoint of High-Level Transient Finite Element Programs
                                              P. E. Farrell, D. A. Ham, S. W. Funke and M. E. Rognes
                                              SIAM Journal on Scientific Computing, vol. 35, pp. 369—393, 2013
                                            3. A Framework for the Automation of Generalised Stability Theory
                                              P. E. Farrell, C. Cotter and S. W. Funke
                                              SIAM Journal on Scientific Computing, vol. 36, pp. C25–C48, 2014, [DOI]
                                            4. Assessment of Spurious Mixing in Adaptive Mesh Simulations of the Two-Dimensional Lock-Exchange
                                              H. R. Hiester, M. D. Piggott, P. E. Farrell and P. A. Allison
                                              Ocean Modelling, vol. 73, pp. 30—44, 2014, [DOI]
                                            5. The Immersed Body Supermeshing Method for Modelling Reactor Physics Problems With Complex Internal Structures
                                              A. G. Buchan, P. E. Farrell, G. J. Gorman, A. J. H. Goddard, M. D. Eaton, E. T. Nygaard, P. L. Angelo, R. P. Smedley-Stevenson, S. R. Merton and P. N. Smith
                                              Annals of Nuclear Energy, vol. 63, pp. 399—408, 2014, [DOI]
                                            6. Tidal Turbine Array Optimisation Using the Adjoint Approach
                                              S. W. Funke, P. E. Farrell and M. D. Piggott
                                              Renewable Energy, vol. 63, pp. 658—673, 2014, [DOI]
                                            7. Deflation Techniques for Finding Distinct Solutions of Nonlinear Partial Differential Equations
                                              P. E. Farrell, A. Birkisson and S. W. Funke
                                              SIAM Journal on Scientific Computing, vol. 37, pp. A2026—A2045, 2015, [DOI]
                                            8. The Number of Distinct Eigenvalues of a Matrix After Perturbation
                                              P. E. Farrell
                                              Society for Industrial and Applied Mathematics, 2016, [DOI]
                                            9. Linear and nonlinear solvers for variational phase-field models of brittle fracture
                                              P. E. Farrell and C. Maurini
                                              International Journal for Numerical Methods in Engineering, 2016, [DOI]
                                            10. Reconstructing wave profiles from inundation data
                                              S. W. Funke, P. E. Farrell and M. D. Piggott
                                              Computer Methods in Applied Mechanics and Engineering, 2017, [DOI]
                                            11. cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology
                                              M. E. Rognes, P. E. Farrell, S. W. Funke, J. E. Hake and M. Maleckar
                                              Journal of Open Source Software, 2017, [DOI]
                                            12. Geometric MCMC for infinite-dimensional inverse problems
                                              A. Beskos, M. Giolami, S. Lan, P. E. Farrell and P. A. Stuart
                                              Journal of Computational Physics, 2017, [DOI]
                                            13. A Preconditioner for the Ohta–Kawasaki Equation
                                              P. E. Farrell and J. W. Pearson
                                              SIAM Journal on Matrix Analysis and Applications, 2017, [DOI]
                                            14. From molecular to continuum modelling of bistable liquid crystal devices
                                              M. Robinson, C. Luo, P. E. Farrell, R. Erban and A. Majumdar
                                              Liquid Crystals, 2017, [DOI]
                                            15. Analysis of Carrier's Problem
                                              J. Chapman and P. E. Farrell
                                              SIAM Journal on Applied Mathematics, 2017, [DOI]
                                            16. Computing stationary solutions of the two-dimensional Gross–Pitaevskii equation with deflated continuation
                                              E. G. Charalampidis, P. Kevrekidis and P. E. Farrell
                                              Accepted for publication in Communications in Nonlinear Science and Numerical Simulation, 2017, [DOI]

                                            Talks

                                            1. Using Adjoints to Answer Scientific Questions
                                              P. E. Farrell
                                              CBC and CCI Workshop on Advancing Numerical Technologies in the Cardiac Domain, May 15, 2013
                                            2. Deflation techniques for distinct solutions of nonlinear PDEs
                                              P. E. Farrell
                                              17th IMA Leslie Fox Prize Competition, Glasgow, UK, 2015, 22 June, 2015
                                            3. Automated adjoint finite element simulations with dolfin-adjoint
                                              P. E. Farrell
                                              AGM of NAG Ltd (keynote scientific speaker), Witney, UK, 2015, 18 September, 2015
                                            4. Automated adjoint finite element simulations within FEniCS
                                              P. E. Farrell
                                              NASA Langley, Langley, USA, 2015, 5 March, 2015
                                            5. Deflation techniques for distinct solutions of nonlinear PDEs
                                              P. E. Farrell
                                              IMA Conference on Numerical Methods for Simulation, Oxford, UK, 2015
                                            6. Deflation techniques for distinct solutions of nonlinear PDEs
                                              P. E. Farrell
                                              PETSc 20 year anniversary conference, Chicago, USA, 2015, 16 June, 2015
                                            7. Deflation techniques for distinct solutions of nonlinear PDEs
                                              P. E. Farrell
                                              University of Marburg, 2016
                                            8. Scalable bifurcation analysis of nonlinear PDE
                                              P. E. Farrell
                                              University of Warwick, 2016
                                            9. Deflation techniques for distinct solutions of nonlinear PDEs
                                              P. E. Farrell
                                              University of Lugano, 2016
                                            10. Nonlinear solvers for variational fracture mechanics
                                              P. E. Farrell
                                              World Congress on Computational Mechanics, Seoul,, 2016
                                            11. Deflation techniques for distinct solutions of nonlinear PDEs
                                              P. E. Farrell
                                              Schlumberger Abingdon Technology Centre, 2016
                                            12. Deflation techniques for distinct solutions of nonlinear PDEs,
                                              P. E. Farrell
                                              Uppsala University, 2016
                                            13. Deflation techniques for distinct solutions of nonlinear PDEs
                                              P. E. Farrell
                                              Lund University, 2016
                                            14. Deflation techniques for distinct solutions of nonlinear PDEs
                                              P. E. Farrell
                                              Tufts University, 2016
                                            15. Deflation techniques for distinct solutions of nonlinear PDEs
                                              P. E. Farrell
                                              University of Manchester, 2016
                                            16. Bifurcation analysis of PDEs and VIs with deflated continuation
                                              P. E. Farrell
                                              University College of London, 2017
                                            17. Bifurcation analysis of PDEs and VIs with deflated continuation
                                              P. E. Farrell
                                              University of Bath, 2017

                                            Posters

                                            1. Dolfin-adjoint: Automatic adjoint models for FEniCS
                                              S. W. Funke, P. E. Farrell, D. A. Ham and M. E. Rognes
                                              The 8th International Congress on Industrial and Applied Mathematics, 2015
                                            2. Dolfin-adjoint, automated adjoint models for FEniCS
                                              S. W. Funke, P. E. Farrell, D. Ham and M. E. Rognes
                                              2015

                                            Vidar Tonaas Fauske

                                              Talks

                                              1. Diffing and Merging Jupyter Notebooks with nbdime
                                                B. Ragan-Kelley, V. T. Fauske and M. S. Alnæs
                                                SciPy 2016, 2016
                                              2. nbdime: diffing and merging notebooks
                                                V. T. Fauske, M. S. Alnæs and B. Ragan-Kelley
                                                JupyterDay Orsay, 2016
                                              3. nbdime: Notebook Diffing and Merging
                                                V. T. Fauske, M. S. Alnæs and B. Ragan-Kelley
                                                EuroSciPy 2016, Erlangen, Germany, 2016
                                              4. 3D visualization in Jupyter Notebooks
                                                M. S. Alnæs, V. T. Fauske and B. Ragan-Kelley
                                                Luxembourg, 2017
                                              5. Notebooks in Version Control - diffing and merging with nbdime
                                                V. T. Fauske, B. Ragan-Kelley and M. S. Alnæs
                                                Computational Mathematics with Jupyter workshop, Edinburgh, Scotland, 2017

                                              Jonathan Feinberg

                                                Articles in International Journals

                                                1. Chaospy: An open source tool for designing methods of uncertainty quantification
                                                  J. Feinberg and H. P. Langtangen
                                                  Journal of Computational Science, vol. 11, pp. 46 — 57, 2015, [DOI]
                                                2. Stochastic sensitivity analysis for timing and amplitude of pressure waves in the arterial system
                                                  V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                  International Journal for Numerical Methods in Biomedical Engineering, vol. 31, 2015, [DOI]
                                                3. A guide to uncertainty quantification and sensitivity analysis for cardiovascular applications
                                                  V. G. Eck, W. P. Donders, J. Sturdy, J. Feinberg, T. Delhaas and L. R. Hellevik
                                                  International Journal for Numerical Methods in Biomedical Engineering, vol. 32, 2016, [DOI]
                                                4. Multivariate Polynomial Chaos Expansions with Dependent Variables
                                                  J. Feinberg, V. G. Eck and H. P. Langtangen
                                                  Accepted for publication in SIAM Journal on Scientific Computing, 2017

                                                Refereed Proceedings

                                                1. Uncertainty Quantification of Diffusion in Layered Media by a New Method Based on Polynomial Chaos Expansion
                                                  J. Feinberg and H. P. Langtangen
                                                  in Seventh National Conference on Computational Mechanics MekIT'13, 2013
                                                2. RoseDist: Generalized Tool for Simulating With Non-Standard Probability Distributions
                                                  J. Feinberg and S. Clark
                                                  in MODSIM2013, 20th International Congress on Modelling and Simulation, 2013
                                                3. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                                  V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                  in 4th International Conference on Computational and Mathematical Biomedical Engineering (CMBE), Paris, June 29-July 3, 2015
                                                4. Towards robust clinical assessment of arterial compliance
                                                  J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                  in 28th Nordic Seminar on Computational Mechanics, 2015
                                                5. Uncertainty quantification and sensitivity analysis for wave propagation models of the arterial systemic circulation
                                                  V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                  in ICCB 2015, VI International Conference on Computational Bioengineering, Barcelona, 2015, 2015
                                                6. Matlab2cpp: A Matlab-to-C++ code translator
                                                  G. Y. Paulsen, J. Feinberg, X. Cai and B. Nordmoen
                                                  in IEEE 2016 11th System of Systems Engineering Conference (SoSE), 2016

                                                Conference Proceedings

                                                1. Stochastic arterial flow simulations
                                                  V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                  in Proceedings of the 27th Nordic Seminar on Computational Mechanics, 2014
                                                2. Effects of parametric uncertainty in blood flow simulations
                                                  V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                  in Virtual Physiological Human Conference 2014, Trondheim, 2014

                                                Theses

                                                1. Some Improvements and Applications of Non-intrusive Polynomial Chaos Expansions
                                                  J. Feinberg
                                                  Ph.D. Thesis, UiO, 2015

                                                Talks

                                                1. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                                  V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                  4th International Conference on Computational and Mathematical Biomedical Engineering, France, 2015
                                                2. Polynomial Chaos Expansions part 1: Method introduction
                                                  J. Feinberg
                                                  2015 eVITA Winter School - Uncertainty Quantification for Physical Phenomena, Geilo, Norway, January 18-23, 2015
                                                3. Polynomial Chaos Expansions part 2: Practical implementation
                                                  J. Feinberg
                                                  2015 eVITA Winter School - Uncertainty Quantification for Physical Phenomena, Geilo, Norway, January 18-23, 2015
                                                4. Polynomial Chaos Expansions part 3: Some advanced topics
                                                  J. Feinberg
                                                  2015 eVITA Winter School - Uncertainty Quantification for Physical Phenomena, Geilo, Norway, January 18-23, 2015
                                                5. Towards robust clinical assessment of arterial compliance
                                                  J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                  28th Nordic Seminar on Computational Mechanics, 2015

                                                Henrik Finsberg

                                                  Articles in International Journals

                                                  1. High resolution data assimilation of cardiac mechanics
                                                    G. Balaban, H. Finsberg, H. H. Odland, M. E. Rognes, S. Ross, J. Sundnes and S. Wall
                                                    International journal for numerical methods in biomedical engineering, 2017, [DOI]

                                                  Refereed Proceedings

                                                  1. Personalized Cardiac Mechanical Model using a High Resolution Contraction Field
                                                    H. Finsberg, G. Balaban, J. Sundnes, M. E. Rognes, H.-H. Odland, S. Ross and S. Wall
                                                    in VPH16 Translating VPH to the Clinic, 2016

                                                  Conference Proceedings

                                                  1. Personalization of a Cardiac Compuational Model using Clinical Measurements
                                                    H. Finsberg, G. Balaban, J. Sundnes, M. E. Rognes and S. Wall
                                                    in 28th Nordic Seminar on Computational Mechanics, 2015
                                                  2. Optimization of a Spatially Varying Cardiac Contraction parameter using the Adjoint Method
                                                    H. Finsberg, G. Balaban, M. E. Rognes, J. Sundnes and S. Wall
                                                    in FEniCS'16, 2016

                                                  Talks

                                                  1. Patient Constrained Ventricular Stress Mapping
                                                    G. Balaban and H. Finsberg
                                                    Lugano Switzerland, 2015

                                                  Posters

                                                  1. Patient Specific Modeling of Cardiac Mechanics using the Active Strain Formulation
                                                    H. Finsberg, G. Balaban, S. Wall, J. Sundnes and M. E. Rognes
                                                    Geilo Winter School, 2016
                                                  2. Sensitivity Analysis of Cardiac Growth Models
                                                    L. Nikitushkina, S. W. Funke, H. Finsberg, L. C. Lee and S. Wall
                                                    2017
                                                  3. Mechanical Analysis of Pulmonary Hypertension via Adjoint based Data Assimilation of a Finite Element Model
                                                    H. Finsberg, C. Xi, J. Tan, L. Zhong, L. Lee, J. Sundnes and S. Wall
                                                    2017

                                                  Hannibal E. Fossum

                                                    Articles in International Journals

                                                    1. Dispersion of Legionella-Containing Aerosols From a Biological Treatment Plant
                                                      J. M. Blatny, H. E. Fossum, J. Ho, M. Tutkun, G. Skogan, Ø. Andreassen, E. M. Fykse, V. Waagen and B. A. P. Reif
                                                      Frontiers in Bioscience, vol. E3, pp. 1300—1309, 2011

                                                    Refereed Proceedings

                                                    1. Modeling the Dispersion and Transport of Aerosols Emitted From Industrial Facility During 2005 and 2008 Outbreaks of Legionnaire's Disease in Norway
                                                      H. E. Fossum, M. Tutkun, B. A. P. Reif and Ø. Andreassen
                                                      in Sixth national conference on Computational Mechanics (MekIT'11), 2011
                                                    2. Flow Patterns and Aerosol Dispersion Inside an Aerosol Test Chamber
                                                      H. E. Fossum, B. A. P. Reif and G. Skogan
                                                      in Sixth national conference on Computational Mechanics (MekIT'11), 2011

                                                    Simon W. Funke

                                                      Articles in International Journals

                                                      1. A wetting and drying algorithm with a combined pressure/free-surface formulation for non-hydrostatic models
                                                        S. W. Funke, C. Pain, S. Kramer and M. D. Piggott
                                                        Advances in Water Resources, vol. 34, pp. 1483 — 1495, 2011, [DOI]
                                                      2. Automated Derivation of the Adjoint of High-Level Transient Finite Element Programs
                                                        P. E. Farrell, D. A. Ham, S. W. Funke and M. E. Rognes
                                                        SIAM Journal on Scientific Computing, vol. 35, pp. 369—393, 2013
                                                      3. A Framework for the Automation of Generalised Stability Theory
                                                        P. E. Farrell, C. Cotter and S. W. Funke
                                                        SIAM Journal on Scientific Computing, vol. 36, pp. C25–C48, 2014, [DOI]
                                                      4. Tidal Turbine Array Optimisation Using the Adjoint Approach
                                                        S. W. Funke, P. E. Farrell and M. D. Piggott
                                                        Renewable Energy, vol. 63, pp. 658—673, 2014, [DOI]
                                                      5. Designing Large Arrays of Tidal Turbines: a Synthesis and Review
                                                        R. Venell, S. W. Funke, S. Draper, C. Stevens and T. Divett
                                                        Renewable & Sustainable Energy Reviews, vol. 41, pp. 454—472, 2015, [DOI]
                                                      6. Deflation Techniques for Finding Distinct Solutions of Nonlinear Partial Differential Equations
                                                        P. E. Farrell, A. Birkisson and S. W. Funke
                                                        SIAM Journal on Scientific Computing, vol. 37, pp. A2026—A2045, 2015, [DOI]
                                                      7. Determining Tidal Turbine Farm Efficiency in the Western Passage using the Disc Actuator Theory
                                                        S. Rao, H. Xue, M. Bao and S. W. Funke
                                                        Ocean Dynamics, vol. 66, pp. 41—57, 2015, [DOI]
                                                      8. Design optimisation and resource assessment for tidal-stream renewable energy farms using a new continuous turbine approach
                                                        S. W. Funke, S. C. Kramer and M. D. Piggott
                                                        Renewable Energy, vol. 99, pp. 1046—1061, 2016, [DOI]
                                                      9. Integration of cost modelling within the micro-siting design optimisation of tidal turbine arrays
                                                        D. Culley, S. W. Funke, S. Kramer and M. D. Piggott
                                                        Renewable Energy, vol. 85, pp. 215—227, 2016, [DOI]
                                                      10. A surrogate-model assisted approach for optimising the size of tidal turbine arrays
                                                        D. M. Culley, S. W. Funke, S. C. Kramer and M. D. Piggott
                                                        International Journal of Marine Energy, 2016
                                                      11. The trade off between tidal-turbine array yield and environmental impact: a multi-objective optimisation problem
                                                        R. d. Feu, S. W. Funke, S. C. Kramer, D. M. Culley, J. Hill, B. Halpern and M. D. Piggott
                                                        Renewable Energy, 2016
                                                      12. Hybrid Genetic Deflated Newton Method for Global Optimisation
                                                        M. Noack and S. W. Funke
                                                        Journal of Computational and Applied Mathematics, 2017, [DOI]
                                                      13. Reconstructing wave profiles from inundation data
                                                        S. W. Funke, P. E. Farrell and M. D. Piggott
                                                        Computer Methods in Applied Mechanics and Engineering, 2017, [DOI]
                                                      14. Application of the adjoint approach to optimise the initial conditions of a turbidity current (AdjointTurbidity 1.0)
                                                        S. D. Parkinson, S. W. Funke, J. Hill, M. D. Piggott and P. A. Allison
                                                        Geoscientic Model Development, pp. 1051—1068, 2017, [DOI]
                                                      15. Variational data assimilation for transient blood flow simulations
                                                        S. W. Funke, M. Nordaas, Ø. Evju, M. S. Alnæs and K.-A. Mardal
                                                        Accepted for publication in International Journal for Numerical Methods in Biomedical Engineering, 2017
                                                      16. cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology
                                                        M. E. Rognes, P. E. Farrell, S. W. Funke, J. E. Hake and M. Maleckar
                                                        Journal of Open Source Software, 2017, [DOI]

                                                      Books

                                                      1. Mesh dependence in PDE-constrained optimisation
                                                        T. Schwedes, D. A. Ham, S. W. Funke and M. D. Piggott
                                                        Springer Research Brief, 2017

                                                      Refereed Proceedings

                                                      1. Tidal stream resource assessment through optimisation of array design with quantification of uncertainty
                                                        D. M. Culley, S. W. Funke, S. C. Kramer and M. D. Piggott
                                                        in European Wave and Tidal Energy Conference, 2015
                                                      2. A continuous approach for the optimisation of tidal turbine farms
                                                        S. C. Kramer, S. W. Funke and M. D. Piggott
                                                        in European Wave and Tidal Energy Conference 2015, 2015
                                                      3. Standard methodology for tidal array project optimisation: An idealized study of the Minas Passage
                                                        T. Roc, S. W. Funke and K. M. Thyng
                                                        in European Wave and Tidal Energy Conference 2015, 2015
                                                      4. On the validity of tidal turbine array configurations obtained from steady-state adjoint optimisation
                                                        C. T. Jacobs, M. D. Piggott, S. C. Kramer and S. W. Funke
                                                        in European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS 2016), 2016

                                                      Conference Proceedings

                                                      1. A Hierarchy of Approaches for the Optimal Design of Tidal Turbine Arrays
                                                        D. M. Culley, S. W. Funke, S. C. Kramer and M. D. Piggott
                                                        in ICOE 2014 (5th International Conference on Ocean Energy), 2014
                                                      2. Shape Optimization with Multiple Meshes
                                                        J. S. Dokken, S. W. Funke, A. Johansson and S. Schmidt
                                                        in FEniCS Conference 2017, 2017

                                                      Talks

                                                      1. PDE-Constrained Optimisation in Hilbert Spaces
                                                        S. W. Funke and M. Nordaas
                                                        FEniCS'14 workshop, Paris, 2014
                                                      2. Lecture on PDE-constrained optimization with FEniCS
                                                        S. W. Funke
                                                        Zhjiang University, Hangzhou, China, 2014
                                                      3. Data assimilation in time-dependent blood flow simulations
                                                        S. W. Funke
                                                        Ankara, 2015
                                                      4. Data assimilation in time-dependent blood flow simulations
                                                        S. W. Funke
                                                        London, UK, 2015
                                                      5. Optimizing tidal turbine farms with high-level tools
                                                        S. W. Funke and T. Roc
                                                        Texas A&M, USA, 2015
                                                      6. Assimilating 4D-MRI blood flow measurements using PDE-constrained optimisation
                                                        S. W. Funke
                                                        Oslo, 2015
                                                      7. Designing Tidal Turbine Arrays With PDE-constrained Optimisation
                                                        S. W. Funke
                                                        Pilsen, Czech Republic, 2016
                                                      8. Variational data assimilation for blood flow simulations
                                                        K.-A. Mardal, S. W. Funke, M. Nordaas, Ø. Evju and M. S. Alnæs
                                                        MS at SIAM UQ, Zurich, 2016
                                                      9. Introduction to FEniCS and dolfin-adjoint
                                                        S. W. Funke
                                                        Symposium on the Application of Finite Elements in Physics and Engineering, University of South Africa, Johannesburg, South Africa, 2016
                                                      10. Designing Tidal Turbine Arrays With PDE-constrained Optimisation
                                                        S. W. Funke
                                                        ESCO 2016, Plzeň, Czech Republic, 2016
                                                      11. Automatic Adjoints of Multimesh Finite Element Discretisations
                                                        S. W. Funke, J. S. Dokken, A. Johansson and S. Schmidt
                                                        Atlanta, USA, 2017
                                                      12. Machine learning with expert systems
                                                        S. W. Funke
                                                        Simula Research Laboratory, 2017
                                                      13. Shape Optimization with Multiple Meshes
                                                        J. S. Dokken, S. W. Funke, A. Johansson and S. Schmidt
                                                        Luxenbourg, 2017
                                                      14. Optimization Problems in Dynamical Domains with Unfitted Meshes
                                                        S. W. Funke, J. S. Dokken, A. Johansson and S. Schmidt
                                                        X-DMS 2017, Umeå, 2017
                                                      15. The Power of Python in Science and Education
                                                        S. W. Funke
                                                        Tromsø, 2017

                                                      Posters

                                                      1. Benchmarking Tidal Array Optimization: a Balance Between Impacts & Economics of the Bay of Fundy
                                                        T. Roc, K. Thyng and S. W. Funke
                                                        EWTEC 2015, 2014
                                                      2. Resource Assessment of Tidal Sites Through Array Optimisation of the Number of Turbines and the Micro-Siting Design
                                                        D. M. Culley, S. W. Funke, S. Kramer and M. D. Piggott
                                                        2014
                                                      3. Dolfin-adjoint: Automatic adjoint models for FEniCS
                                                        S. W. Funke, P. E. Farrell, D. A. Ham and M. E. Rognes
                                                        The 8th International Congress on Industrial and Applied Mathematics, 2015
                                                      4. Dolfin-adjoint, automated adjoint models for FEniCS
                                                        S. W. Funke, P. E. Farrell, D. Ham and M. E. Rognes
                                                        2015
                                                      5. A new algorithmic differentiation tool (not only) for FEniCS
                                                        S. Mitusch and S. W. Funke
                                                        2017
                                                      6. Sensitivity Analysis of Cardiac Growth Models
                                                        L. Nikitushkina, S. W. Funke, H. Finsberg, L. C. Lee and S. Wall
                                                        2017

                                                      Namit Gaur

                                                        Articles in International Journals

                                                        1. Accelerating Detailed Tissue-Scale 3D Cardiac Simulations Using Heterogeneous CPU-Xeon Phi Computing
                                                          J. Langguth, Q. Lan, N. Gaur and X. Cai
                                                          International Journal of Parallel Programming, pp. 1—23, 2016, [DOI]

                                                        Refereed Proceedings

                                                        1. Towards Detailed Tissue-Scale 3D Simulations of Electrical Activity and Calcium Handling in the Human Cardiac Ventricle
                                                          Q. Lan, N. Gaur, J. Langguth and X. Cai
                                                          in The 15th International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP 2015), 2015
                                                        2. Enabling Tissue-Scale Cardiac Simulations Using Heterogeneous Computing on Tianhe-2
                                                          J. Langguth, Q. Lan, N. Gaur, X. Cai and M. Wen
                                                          in IEEE 22nd International Conference on Parallel and Distributed Systems (ICPADS), 2016

                                                        Talks

                                                        1. Arrhythmogenic Mechanisms and Therapeutic Targets for Catecholaminergic Polymorphic Ventricular Tachycardia: A Simulation Study in a Human Ventricular Myocyte
                                                          N. Gaur, X. Cai and Y. Rudy
                                                          Simula Research Laboratory, 2014
                                                        2. Mathematical Modeling of Ca Handling and Computational Studies of Ca-related Arrhythmogenesis in Heart
                                                          N. Gaur, X. Cai and Y. Rudy
                                                          National University of Defense Technology, China, 2014

                                                        Posters

                                                        1. Spontaneous Ca2+ Release and Ca2+ Waves Underlie Early and Delayed Afterdepolarizations, and Triggered Activity, in Ryanodine Receptor Mutations Associated With Catecholaminergic Polymorphic Ventricular Tachycardia
                                                          N. Gaur, X. Cai and Y. Rudy
                                                          2014
                                                        2. Cellular Arrhythmogenesis in CPVT in a Computational Model of Cardiac Ventricular Myocyte
                                                          N. Gaur, X. Cai and Y. Rudy
                                                          2014
                                                        3. Spontaneous Ca2+ Release and Ca2+ Waves Underlie Early and Delayed Afterdepolarizations, and Triggered Activity in Ryanodine Receptor Mutation associated with Catecholaminergic Polymorphic Ventricular Tachycardia
                                                          N. Gaur, X. Cai and Y. Rudy
                                                          2014
                                                        4. Cellular Arrhythmogenesis in CPVT in a computational model of cardiac ventricular myocyte
                                                          N. Gaur, X. Cai and Y. Rudy
                                                          2014

                                                        Tor Gillberg

                                                          Articles in International Journals

                                                          1. Accuracy and Efficiency of Stencils for the Eikonal Equation in Earth Modelling
                                                            T. Gillberg, Ø. Hjelle and A. M. Bruaset
                                                            Computational Geosciences, vol. 16, pp. 933—952, 2012, [DOI]
                                                          2. Fast Computation of Eikonal and Transport Equations on GPU Computer Architectures
                                                            M. Noack and T. Gillberg
                                                            Geophysics, vol. 80, 2015

                                                          Refereed Proceedings

                                                          1. A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding
                                                            T. Gillberg
                                                            in MODSIM2011, 19th International Congress on Modelling and Simulation, 2011
                                                          2. A Parallel 3D Front Propagation Algorithm for Simulation of Geological Folding on GPUs
                                                            T. Gillberg, Ø. Hjelle and A. M. Bruaset
                                                            in EAGE 74th Conference & Exhibition, Copenhagen, 2012
                                                          3. A New Parallel 3D Front Propagation Algorithm for Fast Simulation of Geological Folds
                                                            T. Gillberg, M. Sourouri and X. Cai
                                                            in The International Conference on Computational Science, ICCS 2012, 2012
                                                          4. Effective Multi-GPU Communication Using Multiple CUDA Streams and Threads
                                                            M. Sourouri, T. Gillberg, S. Baden and X. Cai
                                                            in 20th International Conference on Parallel and Distributed Systems (ICPADS 2014), 2014

                                                          Technical Reports

                                                          1. Parallel Solvers for Static Hamilton-Jacobi Equations in Three Dimensions
                                                            T. Gillberg, A. M. Bruaset, M. Sourouri and Ø. Hjelle
                                                            Simula Research Laboratory, 2013

                                                          Theses

                                                          1. Fast and Accurate Front Propagation for Simulation of Geological Folds
                                                            T. Gillberg
                                                            Ph.D. Thesis, Faculty of Mathematics and Natural Sciences, University of Oslo, 2013

                                                          Talks

                                                          1. A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding
                                                            T. Gillberg
                                                            The 19th International Congress on Modelling and Simulation (MODSIM2011), 2011
                                                          2. A Parallel 3D Front Propagation Algorithm for Simulation of Geological Folding on GPUs
                                                            T. Gillberg
                                                            EAGE 74th Conference & Exhibition, 2012
                                                          3. Massively Parallel Front Tracking
                                                            T. Gillberg
                                                            Computational Geoscience Workshop, 18-20 January 2012 in Geilo, 2012
                                                          4. Developing and Implementing Parallel Algorithms for Fold Simulations in 3D
                                                            T. Gillberg
                                                            Presented during a workshop at Simula: Using the GPU for Scientific Computing: coding concepts and a look at applications in structural geology http://simula.no/intranet/news/using-the-gpu-for-scie\ ntific-computing-coding-concepts-and-a-look-at-appl, 2013
                                                          5. Fast and accurate Solutions of the Eikonal and Transport Equations
                                                            M. Noack, T. Gillberg and S. Clark
                                                            Amsterdam, 2014

                                                          Sjur Urdson Gjerald

                                                            Chapters in Books

                                                            1. Patient–Specific Parameter Estimation for a Transversely Isotropic Active Strain Model of Left Ventricular Mechanics
                                                              S. U. Gjerald, J. E. Hake, S. Pezzuto, J. Sundnes and S. Wall
                                                              in Lecture Notes in Computer Science, Springer International Publishing, pp. 93–104, 2014

                                                            Refereed Proceedings

                                                            1. Patient–Specific Parameter Estimation for a Transversely Isotropic Active Strain Model of Left Ventricular Mechanics
                                                              S. U. Gjerald, J. E. Hake, S. Pezzuto, J. Sundnes and S. Wall
                                                              in Statistical Atlases and Computational Models of the Heart-Imaging and Modelling Challenges, 2015
                                                            2. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythmogenic cardiomyopathy
                                                              S. Kallhovd, S. U. Gjerald, O. Maennel, J. Saberniak, K. Haugaa and M. Maleckar
                                                              in E-Health and Bioengineering Conference (EHB), 2015

                                                            Talks

                                                            1. Towards Patient-Specific Models of Strongly Coupled Cardiac Electro-Mechanics
                                                              J. Sundnes, S. Wall and S. U. Gjerald
                                                              Cardiac Physiome Workshop, San Diego, 2012
                                                            2. Patient-Specific Models of Cardiac Electro-Mechanics
                                                              J. Sundnes, S. Wall, S. U. Gjerald, J. E. Hake and B. L. de Oliveira
                                                              Federal University of Juiz de Fora, 2013
                                                            3. Patient Specific Models of Cardiac Electro-Mechanics
                                                              J. Sundnes, S. Wall, S. U. Gjerald, J. E. Hake and B. L. de Oliveira
                                                              Seminar at Ecole des Mines, St Etienne, France, 2014
                                                            4. A generic right ventricle model for simulating patient-specific pacing procedures from echocardiography data
                                                              S. U. Gjerald, S. Sarvari, H. H. Odland and S. Wall
                                                              Workshop on Models for surgical decision support at VPH2014 in Trondheim, 2014
                                                            5. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythomogenic cardiomyopathy
                                                              S. Kallhovd, V. Mezzano, S. U. Gjerald, J. Saberniak, F. Sheikh, H. Haugaa and M. Maleckar
                                                              VPH 2014, Trondheim, Norway, 2014
                                                            6. Computational models of electro-mechanical interactions in the heart
                                                              J. Sundnes, S. U. Gjerald and S. Wall
                                                              University of Uppsala, 2015

                                                            Posters

                                                            1. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythomogenic cardiomyopathy
                                                              S. Kallhovd, V. Mezzano, S. U. Gjerald, J. Saberniak, F. Sheikh, H. Haugaa and M. Maleckar
                                                              Biophysical Society 58th Annual Meeting, 2014
                                                            2. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythomogenic cardiomyopathy
                                                              S. Kallhovd, V. Mezzano, S. U. Gjerald, J. Saberniak, F. Sheikh, H. Haugaa and M. Maleckar
                                                              Copenhagen Meeting on Cardiac Arrhythmia, May 19-22, 2014, 2014

                                                            Thor Gjesdal

                                                              Articles in International Journals

                                                              1. Variational Multiscale Turbulence Modelling in a High Order Spectral Element Method
                                                                C. E. Wasberg, T. Gjesdal, B. A. P. Reif and Ø. Andreassen
                                                                Journal of Computational Physics, vol. 228, pp. 7333—7356, 2009, [DOI]

                                                              Sylfest Glimsdal

                                                                Articles in International Journals

                                                                1. Tsunami Generation and Propagation From the Mjølnir Asteroid Impact
                                                                  S. Glimsdal, G. K. Pedersen, H. P. Langtangen, V. Shuvalov and H. Dypvik
                                                                  Metheoritics & Planetary Science, vol. 42, pp. 1473—1493, 2007

                                                                Chapters in Books

                                                                1. The Mjølnir Tsunami
                                                                  S. Glimsdal, G. Pedersen, H. P. Langtangen, V. Shuvalov and H. Dypvik
                                                                  in The Mjølnir Impact Event and its Consequences, Edited by F. Tsikalas, H. Dypvik and M. Smelror, Springer, pp. 257—271, 2010

                                                                D. G. E. Grigoriadis

                                                                  Articles in International Journals

                                                                  1. Lagrangian Particle Dispersion in Turbulent Flow Over a Wall Mounted Obstacle
                                                                    D. G. E. Grigoriadis and S. C. Kassinos
                                                                    International Journal of Heat and Fluid Flow, vol. 30, pp. 462—470, 2009, [DOI]
                                                                  2. Immersed Boundary Method for the MHD Flows of Liquid Metals
                                                                    D. G. E. Grigoriadis, S. C. Kassinos and E. V. Votyakov
                                                                    Journal of Computational Physics, vol. 228, pp. 903—920, 2009
                                                                  3. MHD Flow Past a Circular Cylinder Using the Immersed Boundary Method
                                                                    D. G. E. Grigoriadis, I. E. Sarris and S. C. Kassinos
                                                                    Computers & Fluids, vol. 39, pp. 345—358, 2010, [DOI]

                                                                  Refereed Proceedings

                                                                  1. Lagrangian Particle Dispersion in Turbulent Flow Over a Wall Mounted Obstacle
                                                                    D. G. E. Grigoriadis and S. C. Kassinos
                                                                    in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
                                                                  2. Efficient Simulations of Wall Bounded Magnetohydrodynamics Flows
                                                                    D. G. E. Grigoriadis and S. C. Kassinos
                                                                    in 6th GRACN International Congress on Computational Mechanics, 2008
                                                                  3. Extension of the Immersed Boundary Method for Liquid-Metal Magnetohydrodynamics
                                                                    D. G. E. Grigoriadis and S. C. Kassinos
                                                                    in Immersed Boundary Methods: Current status and Future Research Directions, 2009
                                                                  4. Turbulent Effects of Liquid Metal Flow Under Strong Fringing Magnetic Fields
                                                                    X. Albets-Chico, D. G. E. Grigoriadis, S. C. Kassinos and B. Knaepen
                                                                    in 6th International Symposium on Turbulence and Shear Flow Phenomena, 2009

                                                                  Joachim Berdal Haga

                                                                    Articles in International Journals

                                                                    1. Efficient Block Preconditioners for the Coupled Equations of Pressure and Deformation in Highly Discontinuous Media
                                                                      J. B. Haga, H. Osnes and H. P. Langtangen
                                                                      International Journal for Numerical and Analytical Methods in Geomechanics, vol. 35, pp. 1466—1482, 2011, [DOI]

                                                                    Chapters in Books

                                                                    1. Block Preconditioning of Systems of PDEs
                                                                      K.-A. Mardal and J. B. Haga
                                                                      in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 643—654, 2012

                                                                    Refereed Proceedings

                                                                    1. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow and Heat Transfer in Sedimentary Basins
                                                                      J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                                                                      in MekIT'07. Fourth National Conference on Computational Mechanics, 2007
                                                                    2. On the Performance of an Algebraic Multigrid Preconditioner for the Pressure Equation With Highly Discontinuous Media
                                                                      J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
                                                                      in MekIT'09.  Fifth  national  conference  on  Computational  Mechanics, 2009

                                                                    Technical Reports

                                                                    1. PhD: Simulation of Deformation and Heat Flow in Sedimentary Basins
                                                                      J. B. Haga, H. Osnes, H. P. Langtangen and A. M. Bruaset
                                                                      Simula, 2007

                                                                    Theses

                                                                    1. Numerical Methods for Basin-Scale Poroelastic Modelling
                                                                      J. B. Haga
                                                                      Ph.D. Thesis, University of Oslo, 2011

                                                                    Talks

                                                                    1. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow, and Heat Transport in Porous Geological Formations
                                                                      J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                                                                      Talk at the Fourth National Conference on Computational Mechanics (MekIT'07), Trondheim, Norway, 2007
                                                                    2. Parallel Computations and the Finite Element Method
                                                                      J. B. Haga
                                                                      Invited talk at Sintef Applied Mathematics group, 2008
                                                                    3. On the Perfermance of an Algebraic Multigrid Preconditioner for the Pressure Equationwith Highly Discontinuous Media
                                                                      J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
                                                                      Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009

                                                                    Johan Elon Hake

                                                                      Articles in International Journals

                                                                      1. Stochastic Binding of Ca2+ in the Dyadic Cleft: Continuous Vs. Random-Walk Description of Diffusion.
                                                                        J. E. Hake and G. T. Lines
                                                                        Biophysical Journal, vol. 94, pp. 4184—4201, 2008, [DOI]
                                                                      2. Control of Ca2+ Release by Action Potential Configuration in Normal and Failing Murine Cardiomyocytes
                                                                        W. E. Louch, J. E. Hake, G. F. Jølle, H. K. Mørk, I. Sjaastad, G. T. Lines and O. M. Sejersted
                                                                        Biophysical Journal, vol. 99, pp. 1377—1386, 2010
                                                                      3. Finite-Element Estimation of Protein-ligand Association Rates With Post-Encounter Effects: Applications to Calcium Binding in Troponin C and SERCA
                                                                        P. M. Kekenes-Huskey, A. K. Gillette, J. E. Hake and A. J. McCammon
                                                                        Computational Science & Discovery, vol. 5, pp. 014015, 2012
                                                                      4. Multi-Scale Continuum Modeling of Biological Processes: From Molecular Electro-Diffusion to Sub-Cellular Signaling Transduction
                                                                        Y. Cheng, P. M. Kekenes-Huskey, J. E. Hake, M. J. Holst, A. J. McCammon and A. P. Michailova
                                                                        Computational Science & Discovery, vol. 5, pp. 015002, 2012
                                                                      5. Modeling Cardiac Calcium Sparks in a Three-Dimensional Reconstruction of a Calcium Release Unit
                                                                        J. E. Hake, A. Edwards, Z. Yu, P. M. Kekenes-Huskey, A. P. Michailova, A. J. McCammon, M. J. Holst, M. Hoshijima and A. D. McCulloch
                                                                        The Journal of Physiology, vol. 590, pp. 4403—4422, 2012
                                                                      6. Instabilities of the Resting State in a Mathematical Model of Calcium Handling in Cardiac Myocytes
                                                                        A. Tveito, G. T. Lines, J. E. Hake and A. Edwards
                                                                        Mathematical Biosciences, vol. 236, pp. 97—107, 2012, [DOI]
                                                                      7. Modeling Effects of L-Type Ca2+ Current and Na+-Ca2+ Exchanger on Ca2+ Trigger Flux in Rabbit Myocytes With Realistic T-Tubule Geometries
                                                                        P. M. Kekenes-Huskey, Y. Cheng, J. E. Hake, F. B. Sachse, J. H. Bridge, M. J. Holst, A. J. McCammon, A. D. McCulloch and A. P. Michailova
                                                                        Frontiers in Physiology, vol. 3, pp. 351, 2012
                                                                      8. Slow Calcium-Depolarization-Calcium Waves May Initiate Fast Local Depolarization Waves in Ventricular Tissue
                                                                        A. Tveito, G. T. Lines, A. Edwards, M. Maleckar, A. P. Michailova, J. E. Hake and A. D. McCulloch
                                                                        Progress in Biophysics and Molecular Biology, vol. 110, pp. 295—304, 2012
                                                                      9. UPy: a Ubiquitous Computer Graphics Python API With Biological Modeling Applications
                                                                        L. Autin, G. Johnson, J. E. Hake, A. Olson and M. Sanner
                                                                        IEEE Computer Graphics and Applications, vol. 32, pp. 50—61, 2012
                                                                      10. Slow Ca2+ Sparks De-Synchronize Ca2+ Release in Failing Cardiomyocytes: Evidence for Altered Configuration of Ca2+ Release Units?
                                                                        W. E. Louch, J. E. Hake, H. K. Mørk, K. Hougen, B. Skrbic, D. Ursu, T. Tønnessen, I. Sjaastad and O. M. Sejersted
                                                                        Journal of Molecular and Cellular Cardiology, vol. 58, pp. 41—52, 2013
                                                                      11. Molecular and Subcellular-Scale Modeling of Nucleotide Diffusion in the Cardiac Myofilament Lattice
                                                                        P. M. Kekenes-Huskey, T. Liao, A. K. Gillette, J. E. Hake, Y. Zhang, A. P. Michailova, A. D. McCulloch and A. J. McCammon
                                                                        Biophysical Journal, vol. 105, pp. 2130, 2013, [DOI]
                                                                      12. Non-equilibrium reactivation of Na+ current drives early afterdepolarizations in mouse ventricle
                                                                        A. Edwards, E. Grandi, J. E. Hake, S. Patel, P. Li, S. Miyamoto, J. H. Omens, J. H. Brown, D. M. Bers and A. D. McCulloch
                                                                        Circulation: Arrhythmia and Electrophysiology, vol. 7, pp. 1205—1213, 2014
                                                                      13. Computational modeling of subcellular transport and signaling
                                                                        J. E. Hake, P. M. Kekenes-Huskey and A. D. McCulloch
                                                                        Current Opinion in Structural Biology, vol. 25, pp. 92–97, 2014, [DOI]
                                                                      14. Towards Simulation of Subcellular Calcium Dynamics at Nanometre Resolution
                                                                        J. Chai, J. E. Hake, N. Wu, M. Wen, X. Cai, G. T. Lines, J. Yang, H. Su, C. Zhang and X. Liao
                                                                        International Journal of High Performance Computing Applications, vol. 29, pp. 51—63, 2015, [DOI]
                                                                      15. The FEniCS Project Version 1.5
                                                                        M. S. Alnæs, J. Blechta, J. E. Hake, A. Johansson, B. Kehlet, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
                                                                        Archive of Numerical Software, vol. 3, 2015
                                                                      16. Space-discretization error analysis and stabilization schemes for conduction velocity in cardiac electrophysiology
                                                                        S. Pezzuto, J. E. Hake and J. Sundnes
                                                                        International Journal for Numerical Methods in Biomedical Engineering, 2016, [DOI]
                                                                      17. cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology
                                                                        M. E. Rognes, P. E. Farrell, S. W. Funke, J. E. Hake and M. Maleckar
                                                                        Journal of Open Source Software, 2017, [DOI]

                                                                      Chapters in Books

                                                                      1. Lessons Learned in Mixed Language Programming
                                                                        J. E. Hake and K.-A. Mardal
                                                                        in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 363—381, 2012
                                                                      2. A Coupled Stochastic and Deterministic Model of Ca2+ Dynamics in the Dyadic Cleft
                                                                        J. E. Hake
                                                                        in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 611—627, 2012
                                                                      3. DOLFIN: a C++/Python Finite Element Library
                                                                        A. Logg, G. N. Wells and J. E. Hake
                                                                        in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 173—225, 2012
                                                                      4. Calcium Signaling in Cardiomyocyte Models With Realistic Geometries (6th Edition)
                                                                        A. P. Michailova, A. Edwards, J. E. Hake, M. Hoshijima and A. D. McCulloch
                                                                        in Cardiac Electrophysiology: From Cell to Bedside, Edited by D. Zipes and J. Jalife, Elsevier Science, pp. 33.1—33.10, 2013
                                                                      5. Patient–Specific Parameter Estimation for a Transversely Isotropic Active Strain Model of Left Ventricular Mechanics
                                                                        S. U. Gjerald, J. E. Hake, S. Pezzuto, J. Sundnes and S. Wall
                                                                        in Lecture Notes in Computer Science, Springer International Publishing, pp. 93–104, 2014
                                                                      6. Calcium Signaling in Cardiomyocyte Models With Realistic Geometries (7th Edition)
                                                                        A. Edwards, J. E. Hake, A. P. Michailova, M. Hoshijima and A. D. McCulloch
                                                                        in Cardiac Electrophysiology: From Cell to Bedside, Edited by D. Zipes and J. Jalife, Elsevier Science, 2016

                                                                      Refereed Proceedings

                                                                      1. Patient–Specific Parameter Estimation for a Transversely Isotropic Active Strain Model of Left Ventricular Mechanics
                                                                        S. U. Gjerald, J. E. Hake, S. Pezzuto, J. Sundnes and S. Wall
                                                                        in Statistical Atlases and Computational Models of the Heart-Imaging and Modelling Challenges, 2015

                                                                      Conference Proceedings

                                                                      1. A Markov-State Model for the Regulation of the Sarcoplasmic Reticulum Ca2+ ATPase by Phospholamban
                                                                        P. M. Kekenes-Huskey, A. Edwards, J. E. Hake, A. P. Michailova, A. J. McCammon and A. D. McCulloch
                                                                        in Annual meeting in Biophysical society, 2014

                                                                      Theses

                                                                      1. Calcium Dynamics in Signaling Micro Domains of Cardiac Myocytes - a Modelling Study
                                                                        J. E. Hake
                                                                        Ph.D. Thesis, University of Oslo, 2009

                                                                      Talks

                                                                      1. Subcellular Calsium Handling
                                                                        J. E. Hake
                                                                        Talk at CBC, Seminar on Electrophysiology Modeling, 2007
                                                                      2. Stochastic Binding of Ca2+ Ions in the Dyadic Cleft Continuous Vs Random Walk Description of Diffusion
                                                                        J. E. Hake and G. T. Lines
                                                                        Presentation at ICIAM 07, 2007
                                                                      3. Stochastic Binding of Ca2+ Ions in the Dyadic Cleft Continuous Vs Random Walk Description of Diffusion
                                                                        J. E. Hake and G. T. Lines
                                                                        Poster presentation at 5th Annual CHFR Symposium, 2007
                                                                      4. Modelling the Mesoscopic Length Scale of EC Coupling: the Diadic Cleft
                                                                        J. E. Hake and G. T. Lines
                                                                        Invited talk at 'European Conference on Mathematical and Theoretical Biology', 2008
                                                                      5. Triangular Surface Mesh Improvement and Tetrahedral Mesh Generation Using GAMer and Blender
                                                                        J. E. Hake
                                                                        CBC Seminar series, 2012
                                                                      6. Patient-Specific Models of Cardiac Electro-Mechanics
                                                                        J. Sundnes, S. Wall, S. U. Gjerald, J. E. Hake and B. L. de Oliveira
                                                                        Federal University of Juiz de Fora, 2013
                                                                      7. A General ODE Translator (Gotran): Towards a Versatile Tool for General ODEs
                                                                        J. E. Hake
                                                                        CBC and CCI Workshop on Advancing Numerical Technologies in the Cardiac Domain, May 15, 2013
                                                                      8. Patient Specific Models of Cardiac Electro-Mechanics
                                                                        J. Sundnes, S. Wall, S. U. Gjerald, J. E. Hake and B. L. de Oliveira
                                                                        Seminar at Ecole des Mines, St Etienne, France, 2014
                                                                      9. Computational Models of Electro-Mechanical Interactions in the Heart
                                                                        J. Sundnes, S. Wall, S. Pezzuto, J. E. Hake and B. L. de Oliveira
                                                                        Invited mini symposium presentation at the European Conference for Mathematics in Industry, Taormina, Italy., 2014

                                                                      Posters

                                                                      1. A Stochastic Model of the Ryanodine Receptor Featuring Coupled Gating and Competitive Binding of Luminal and Cytosolic Ca2+ and Mg2+
                                                                        J. E. Hake, W. E. Louch, K. Haugen, I. Sjaastad, O. M. Sejersted, A. D. McCulloch, A. P. Michailova and G. T. Lines
                                                                        2011
                                                                      2. Contributions of Multiple T-Tubules and Membrane Ca2+ Flux Localization to Sub-Cellular Ca2+ Signaling in Rabbit Ventricular Myocytes
                                                                        P. M. Kekenes-Huskey, J. E. Hake, Y. Cheng, F. Sachse, J. Bridge, A. J. McCammon and A. P. Michailova
                                                                        2011
                                                                      3. Contributions of Structural T-Tubule Heterogeneities and Membrane Ca2+ Flux Localization to Local Ca2+ Signaling in Rabbit Ventricular Myocytes
                                                                        P. M. Kekenes-Huskey, J. E. Hake, Y. Cheng, F. Sachse, J. Bridge, A. J. McCammon and A. P. Michailova
                                                                        2011
                                                                      4. Modeling Calcium Sparks in a Three-Dimensional Reconstruction of a Cardiac Calcium Release Unit
                                                                        J. E. Hake, A. Edwards, Z. Yu, P. M. Kekenes-Huskey, A. P. Michailova, A. J. McCammon, M. J. Holst, M. Hoshijima and A. D. McCulloch
                                                                        2012
                                                                      5. βAR-Stimulation Causes EADs But Not DADs in Pre-Failure CAMKIIδC Transgenic Myocytes
                                                                        A. Edwards, J. E. Hake, J. H. Brown and A. D. McCulloch
                                                                        Biophysical Society annual meeting, 2012
                                                                      6. Modeling Calcium Dynamics in Realistic Rabbit Ventricular Myocytes With Several Transverse Tubules
                                                                        P. M. Kekenes-Huskey, J. E. Hake, Y. Cheng, M. J. Holst, F. B. Sachse, J. H. Bridge, A. D. McCulloch, A. J. McCammon and A. P. Michailova
                                                                        2012
                                                                      7. Altered Configurations of Ca2+ Release Units Cause Slowed Ca2+ Sparks in Failing Cardiomyocytes
                                                                        J. E. Hake, H. K. Mørk, K. Hougen, I. Sjaastad, O. M. Sejersted and W. E. Louch
                                                                        2012

                                                                      Public Outreach

                                                                      1. Supercomputing-Enabled Study of Subcellular Calcium Dynamics
                                                                        X. Cai, J. E. Hake and G. T. Lines
                                                                        2014

                                                                      Geir Halnes

                                                                        Articles in International Journals

                                                                        1. An Evaluation of the Accuracy of Classical Models for Computing the Membrane Potential and Extracellular Potential for Neurons
                                                                          A. Tveito, K. H. Jæger, G. T. Lines, Ł. Paszkowski, J. Sundnes, A. Edwards, T. Mäki-Marttunen, G. Halnes and G. T. Einevoll
                                                                          Frontiers in Computational Neuroscience, vol. 11, pp. 27, 2017

                                                                        Chapters in Books

                                                                        1. Astrocytic Ion Dynamics: Implications for Potassium Buffering and Liquid Flow
                                                                          G. Halnes, K. H. Pettersen, L. Øyehaug, M. E. Rognes, E. A. Nagelhus and G. T. Einevoll
                                                                          in Computational Geoscience, Springer, 2017

                                                                        Monica Hanslien

                                                                          Articles in International Journals

                                                                          1. An Unconditionally Stable Numerical Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
                                                                            M. Hanslien, J. Sundnes and A. Tveito
                                                                            Mathematical Biosciences, vol. 208, pp. 375—392, 2007
                                                                          2. A Note on Discontinues Rate Functions for the Gate Variables in Mathematical Models of Cardiac Cells
                                                                            M. Hanslien, J. Sundnes and N. Holden
                                                                            Procedia Computer Science, vol. 1, pp. 945—950, 2008
                                                                          3. An Unconditionally Stable Second Order Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
                                                                            M. Hanslien, R. Artebrant, J. Sundnes and A. Tveito
                                                                            International Journal of Numerical Analysis and Modeling, vol. 6, pp. 627—641, 2009
                                                                          4. Numerical Solution of the Bidomain Equations
                                                                            S. Linge, J. Sundnes, M. Hanslien, G. T. Lines and A. Tveito
                                                                            Philosophical Transactions of the Royal Society A, vol. 367, pp. 1931—1951, 2009
                                                                          5. Stability of Two Time-Integrators for the Aliev-Panfilov System
                                                                            M. Hanslien, R. Artebrant, A. Tveito, G. T. Lines and X. Cai
                                                                            International Journal of Numerical Analysis and Modeling, vol. 8, pp. 427—442, 2011

                                                                          Talks

                                                                          1. Stable Numerical Methods for Cell Models Used in Simulations of Ventricular Defibrillation
                                                                            M. Hanslien
                                                                            Talk at CBC, Seminar on Electrophysiology Modeling, 2007

                                                                          Victor Haughton

                                                                            Articles in International Journals

                                                                            1. Idiopathic Syringomyelia: Phase-Contrast MR of Cerebrospinal Fluid Flow Dynamics at Level of Foramen Magnum
                                                                              A. F. Struck and V. Haughton
                                                                              Radiology, vol. 253, pp. 184—190, 2009, [DOI]
                                                                            2. Motion of the Cerebellar Tonsils in the Foramen Magnum During the Cardiac Cycle
                                                                              J. Cousins and V. Haughton
                                                                              American Journal of Neuroradiology, vol. 30, pp. 1587—1588, 2009
                                                                            3. Characterization of CSF Hydrodynamics in the Presence and Absence of Tonsillar Ectopia by Means of Computational Flow Analysis.
                                                                              A. Roldan, O. Wieben, V. Haughton, T. Osswald and N. Chesler
                                                                              American Journal of Neuroradiology, vol. 30, pp. 941—946, 2009
                                                                            4. CSF Flow Dynamics at the Cranio-Vertebral Junction Studied With an Idealized Model of the Subarachnoid Space and Computational Flow Analysis
                                                                              S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                              American Journal of Neuroradiology, vol. 31, pp. 185—192, 2009
                                                                            5. Accuracy and Reproducibility of Phase-Contrast MR Imaging Measurements for CSF Flow
                                                                              A. L. Wentland, O. Wieben, F. R. Korosec and V. Haughton
                                                                              American Journal of Neuroradiology, vol. 31, pp. 1331—1336, 2010
                                                                            6. Peak CSF Velocities in Patients With Symptomatic and Asymptomatic Chiari I Malformation
                                                                              K. D. Krueger, V. Haughton and S. Hetzel
                                                                              American Journal of Neuroradiology, vol. 31, pp. 1837—1841, 2010
                                                                            7. Characterization of Cyclical CSF Flow in the Foramen Magnum and Upper Cervical Spinal Canal With MR Flow Imaging and Computational Fluid Dynamics
                                                                              S. Hentschel, K.-A. Mardal, A. E. Løvgren, S. Linge and V. Haughton
                                                                              American Journal of Neuroradiology, vol. 31, pp. 997—1002, 2010, [DOI]
                                                                            8. CSF Flow Through the Upper Cervical Spinal Canal in Chiari I Malformation
                                                                              S. Shah, V. Haughton and M. Del R`ïo
                                                                              American Journal of Neuroradiology, vol. 32, pp. 1149—1153, 2011, [DOI]
                                                                            9. Effect of Tonsilar Herniation on Cyclic CSF Flow Studied With Computational Flow Analysis
                                                                              S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland and H. P. Langtangen
                                                                              American Journal of Neuroradiology, vol. 32, pp. 1474—1481, 2011
                                                                            10. CSF Flow in Chiari I and Syringomyelia From the Perspective of Computational Fluid Dynamics
                                                                              K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              The Neuroradiology Journal, vol. 24, pp. 20—23, 2011
                                                                            11. Patient-Specific 3D Simulation of Cyclic CSF Flow at the Cranio-Cervical Region
                                                                              G. Rutkowska, V. Haughton, S. Linge and K.-A. Mardal
                                                                              American Journal of Neuroradiology, vol. 33, pp. 1756—1762, 2012
                                                                            12. Estimation of CSF Flow Resistance in the Upper Cervical Spine
                                                                              K.-A. Mardal, G. Rutkowska, S. Linge and V. Haughton
                                                                              The Neuroradiology Journal, vol. 3, pp. 49—53, 2013
                                                                            13. Simulating CSF Flow Dynamics in the Normal and the Chiari I Subarachnoid Space During Rest and Exertion
                                                                              S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
                                                                              American Journal of Neuroradiology, vol. 34, pp. 41—15, 2013
                                                                            14. Effect of the Central Canal in the Spinal Cord on Fluid Movement Within the Cord
                                                                              I. N. Drøsdal, K.-A. Mardal, K.-H. Støverud and V. Haughton
                                                                              The Neuroradiology Journal, vol. 26, pp. 585—590, 2013
                                                                            15. Spinal Fluid Biomechanics and Imaging: an Update for Neuroradiologists
                                                                              V. Haughton and K.-A. Mardal
                                                                              American Journal of Neuroradiology, vol. 35, pp. 1864—1869, 2014, [DOI]
                                                                            16. Effect of Cranio-Vertebral Decompression on CSF Dynamics in Chiari I Malformation Studied With Computational Fluid Dynamics
                                                                              S. Linge, K.-A. Mardal, A. Helgeland, J. Heiss and V. Haughton
                                                                              Journal of Neurosurgery, vol. 21, pp. 559—564, 2014
                                                                            17. Numerical Simulations of the Pulsating Flow of Cerebrospinal Fluid Flow in the Cervical Spinal Canal of a Chiari Patient
                                                                              A. Helgeland, K.-A. Mardal, V. Haughton and B. A. P. Reif
                                                                              Journal of Biomechanics, vol. 47, pp. 1082—90, 2014
                                                                            18. Poro-elastic modeling of Syringomyelia – a systematic study of the effects of pia mater, central canal, median fissure, white and gray matter on pressure wave propagation and fluid movement within the cervical spinal cord
                                                                              K.-H. Støverud, M. S. Alnæs, H. P. Langtangen, V. Haughton and K.-A. Mardal
                                                                              Computer Methods in Biomechanics and Biomedical Engineering, vol. 19, pp. 686—698, 2015, [DOI]

                                                                            Chapters in Books

                                                                            1. Cerebrospinal fluid flow in adults.
                                                                              W. Bradley, V. Haughton and K.-A. Mardal
                                                                              in Handbook of clinical neurology, Edited by J. C. Masdeu and G. Gonzalez, Elsevier, pp. 591—603, 2016

                                                                            Refereed Proceedings

                                                                            1. Effect of Tonsilar Position on Cerebrospinal Fluid Flow in the Spinal Subarachnoid Space Studied With Computational Fluid Dynamics
                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              in ASNR - 47th Annual Meeting of the American Society of Neuroradiology, 2009
                                                                            2. Porous and Viscous Flow Modeling on the Study of Cyst Development in the Human Spinal Cord
                                                                              I. N. Drøsdal, V. Haughton, K.-A. Mardal and K.-H. Støverud
                                                                              in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
                                                                            3. Cerebrospinal Fluid Flow Characteristics at Double Heart Rate
                                                                              S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
                                                                              in Neuroradiology, 53 (Suppl. 1), S33, 35th European Soc of Neuroradiology ann. meeting, Antwerpen, Belgium, 2011
                                                                            4. The Effect of Varying Cross-Sectional Areas on Cerebrospinal Fluid Flow and Pressure in the Cervical Spine
                                                                              K.-H. Støverud, K.-A. Mardal, H. P. Langtangen and V. Haughton
                                                                              in MekIT'11. Sixth national conference on Computational Mechanics, 2011
                                                                            5. Cyclic Cerebrospinal Fluid Flow (I): Towards the Understanding of Cerebrospinal Fluid Flow Dynamics in Chiari I Malformation
                                                                              S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland, H. P. Langtangen and K.-H. Støverud
                                                                              in ASNR 49th Annual Meeting & the Foundation of the ASNR Symposium, June 4 - 9, 2011., 2011

                                                                            Conference Proceedings

                                                                            1. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                              A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              in 21st Nordic Seminar on Computational Mechanics, 2008
                                                                            2. CSF Flow in Chiari I and Syringomyelia - From the Perspective of Fluid Dynamics
                                                                              K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              in Proceedings of the XIX Symposium Neuroradiologicum, Bologna, Italy, 2010

                                                                            Talks

                                                                            1. Imaging the Craniovertebral Juction
                                                                              V. Haughton
                                                                              Talk at the 35th Annual Course on Computed Tomography and Magnetic Resonance Imaging of the Brain Rush-Presbyterian, Chicago, 2008
                                                                            2. The Chiari I Malformation From the Perspective of Hans Chiari
                                                                              V. Haughton
                                                                              Talk at the Chiari Conference, Northwest Research and Education Institute, 2008
                                                                            3. The Chiari I Malformation From the Perspective of Modern Imaging
                                                                              V. Haughton
                                                                              Talk at the Chiari Conference, Northwest Research and Education Institute, 2008
                                                                            4. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                              A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              Invited talk at the 21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
                                                                            5. Chiari Malformation - the Problem and a Mathematical Approach
                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              Invited talk, Vindern Medical Center, 8th of December, Oslo, Norway, 2008
                                                                            6. Cerebrospinal Fluid Flow in Normal and Chiari Subjects
                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              talk, Seminar at CBC (Simula Research Laboratory), 16th of December, Oslo, Norway, 2008
                                                                            7. Cerebrospinal Fluid Flow Simulations - Normal Subjects and Patients With Chiari I Malformation
                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              talk, Seminar at CBC (Simula Research Laboratory), 31st of October, Oslo, Norway), 2008
                                                                            8. MRI Research and Techniques for CSF Flow
                                                                              V. Haughton
                                                                              ASAP's Chiari & Syringomyelia Conference: Quest for Understanding, 2009
                                                                            9. CSF Flow in the Chiari I Malformation Evaluated With PC MR and Computation Flow Design
                                                                              V. Haughton
                                                                              Nordic Society of Neuroradiology, 2009
                                                                            10. CSF Flow Modelling
                                                                              K.-A. Mardal, V. Haughton, S. Hentschel, H. P. Langtangen, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                              Invited talk at CSR Flow Research Conference at University of Wisconsin, Nov 9, 2009
                                                                            11. Imaging Evaluation of the Chiari I Malformation
                                                                              V. Haughton
                                                                              Meeting and symposium of the American Syringomyelia Alliance Project, 2009
                                                                            12. Cerebrospinal Fluid Flow Investigations With Modelling and Simulation
                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              invited talk at The Chiari Institute, 14th of January, New York, U.S.A., 2009
                                                                            13. Simulating Normal and Abnormal CSF Flow With Idealized Geometries
                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              talk, seminar on cerebrospinal fluid flow, 16th of January, University of Wisconsin, U.S.A., 2009
                                                                            14. Tonsilar Herniation - How Is the CSF Flow Influenced?
                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              Invited talk at Rikshospitalet University Hospital, Oslo, Norway, 5th of June, 2009
                                                                            15. Cerebrospinal Fluid (CSF) - Oscillating Flow and Pressure
                                                                              K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
                                                                            16. CSF Hydrodynamic in Patients With Syringomyelia and Chiari I Malformations
                                                                              K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                              Annual NUPUS meeting in Freudenstadt, 2010
                                                                            17. On Cerebrospinal Fluid Flow
                                                                              V. Haughton
                                                                              CBC Workshop on Cerebrospinal Fluid Flow in the Brain and Spinal Canal - Clinical, Experimental and Mathematical Models and Problems, Simula, May 28, 2010
                                                                            18. Cerebrospinal Fluid Flow in the Upper Cervical Canal in Patients With the Chiari I Malformation
                                                                              K.-A. Mardal, K.-H. Støverud, V. Haughton, S. Linge, H. P. Langtangen, G. Rutkowska and I. N. Drøsdal
                                                                              1ST CSF Hydrodynamics Symposium, 2011
                                                                            19. Ongoing Research: Characterize CSF Flow and Identify the Cause of Syringomyelia With CFD
                                                                              K.-H. Støverud and V. Haughton
                                                                              The workshop Working Toward a Day Without Pain Gala, Buffalo, 2011
                                                                            20. CSF Flow Dynamics: Effects of Viscosity and Inertia
                                                                              K.-H. Støverud, V. Haughton, H. P. Langtangen and K.-A. Mardal
                                                                              ANSR 2012, New York, 2012
                                                                            21. CSF Flow: Acquisition Strategies
                                                                              V. Haughton
                                                                              Lecture at International Society of Magnetic Resonance in Medicine, Orlando, FL, 2012
                                                                            22. On the Assumption of Laminar Flow of CSF in Chiari Patients
                                                                              K.-A. Mardal, A. Helgeland, V. Haughton, B. A. P. Reif and K.-H. Støverud
                                                                              international Chiari Research Group, 2014
                                                                            23. Effect of Spinal Cord Viscoelasticity on Its Response to CSF Pressure Waves: a Computational Study
                                                                              N. Kylstad, K.-A. Mardal, V. Haughton and M. E. Rognes
                                                                              ASNR 53rd Annual Meeting & The Foundation of the ASNR Symposium 2015, April 25 – 30, Chicago, Illinois, 2015
                                                                            24. Role of CSF flow in the pathogenesis of Syringomyelia
                                                                              V. Haughton and K.-A. Mardal
                                                                              ASNR 53rd Annual Meeting & The Foundation of the ASNR Symposium 2015, April 25 – 30, 2015; Chicago, Illinois, 2015
                                                                            25. Simulating Cerebrospinal Fluid Flow and Spinal Cord Movement Associated with Syringomyelia
                                                                              V. Vinje, K.-A. Mardal, V. Haughton and M. E. Rognes
                                                                              Chalmers Institute of Technology, 2016
                                                                            26. Physics of oscillatory CSF Flow
                                                                              K.-A. Mardal, E. K. Lindstrøm and V. Haughton
                                                                              ASSR, San Diego, 2017

                                                                            Anders Helgeland

                                                                              Articles in International Journals

                                                                              1. Effect of Tonsilar Herniation on Cyclic CSF Flow Studied With Computational Flow Analysis
                                                                                S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland and H. P. Langtangen
                                                                                American Journal of Neuroradiology, vol. 32, pp. 1474—1481, 2011
                                                                              2. Simulating CSF Flow Dynamics in the Normal and the Chiari I Subarachnoid Space During Rest and Exertion
                                                                                S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
                                                                                American Journal of Neuroradiology, vol. 34, pp. 41—15, 2013
                                                                              3. Effect of Cranio-Vertebral Decompression on CSF Dynamics in Chiari I Malformation Studied With Computational Fluid Dynamics
                                                                                S. Linge, K.-A. Mardal, A. Helgeland, J. Heiss and V. Haughton
                                                                                Journal of Neurosurgery, vol. 21, pp. 559—564, 2014
                                                                              4. Numerical Simulations of the Pulsating Flow of Cerebrospinal Fluid Flow in the Cervical Spinal Canal of a Chiari Patient
                                                                                A. Helgeland, K.-A. Mardal, V. Haughton and B. A. P. Reif
                                                                                Journal of Biomechanics, vol. 47, pp. 1082—90, 2014

                                                                              Refereed Proceedings

                                                                              1. Cerebrospinal Fluid Flow Characteristics at Double Heart Rate
                                                                                S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
                                                                                in Neuroradiology, 53 (Suppl. 1), S33, 35th European Soc of Neuroradiology ann. meeting, Antwerpen, Belgium, 2011
                                                                              2. Cyclic Cerebrospinal Fluid Flow (I): Towards the Understanding of Cerebrospinal Fluid Flow Dynamics in Chiari I Malformation
                                                                                S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland, H. P. Langtangen and K.-H. Støverud
                                                                                in ASNR 49th Annual Meeting & the Foundation of the ASNR Symposium, June 4 - 9, 2011., 2011

                                                                              Talks

                                                                              1. Patient-Specific Simulations of Stroke and Syringomyelia
                                                                                K.-A. Mardal, S. Hentschel, A. Helgeland, H. P. Langtangen, S. Linge, A. E. Løvgren, A. Logg and K. Valen-Sendstad
                                                                                Talk : Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, Nov 03, 2009
                                                                              2. Some Biomedical Applications at Simula
                                                                                K.-A. Mardal, A. Helgeland, S. Hentschel, H. P. Langtangen, A. Logg, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                Talk at the CBC Workshop on Computational Biology with UMB, 2009
                                                                              3. On the Assumption of Laminar Flow of CSF in Chiari Patients
                                                                                K.-A. Mardal, A. Helgeland, V. Haughton, B. A. P. Reif and K.-H. Støverud
                                                                                international Chiari Research Group, 2014

                                                                              Leif Rune Hellevik

                                                                                Articles in International Journals

                                                                                1. An Assessment of Ductus Venosus Tapering and Wave Transmission From the Fetal Heart
                                                                                  L. R. Hellevik, J. Vierendeels, T. Kiserud, N. Stergiopulos, F. Irgens, E. Dick, K. Riemslagh and P. Verdonck
                                                                                  Biomechanics and Modeling in Mechanobiology, vol. 8, pp. 509—517, 2009, [DOI]
                                                                                2. Impact of Pulmonary Venous Locations on the Intra-Atrial Flow and Mitral Plane Velocity Profile
                                                                                  S. K. Dahl, E. Thomassen, L. R. Hellevik and B. H. Skallerud
                                                                                  Cardiovascular Engineering and Technology, vol. 3, pp. 2069—281, 2012
                                                                                3. FSI-Simulation of Asymmetric Mitral Valve Dynamics During Diastolic Filling
                                                                                  S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, L. R. Hellevik and B. H. Skallerud
                                                                                  Computer Methods in Biomechanics and Biomedical Engineering, vol. 15, pp. 121—130, 2012
                                                                                4. Application of a Strong FSI Coupling Scheme for the Numerical Simulation of Bileaflet Mechanical Heart Valve Dynamics: Study of Wall Shear Stress on the Leaflets
                                                                                  S. Annerel, J. Degroote, J. Vierendeels, T. Claessens, P. Van Ransbeeck, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Segers and P. Verdonck
                                                                                  Progress in Computational Fluid Dynamics, vol. 12, pp. 68—80, 2012
                                                                                5. Human Ductus Venosus Velocity Profiles in the First Trimester
                                                                                  P. R. Leinan, T. Kiserud and L. R. Hellevik
                                                                                  Cardiovascular Engineering and Technology, vol. 4, pp. 257—266, 2013, [DOI]
                                                                                6. A Fast Strong Coupling Algorithm for the Partitioned Fluid-Structure Interaction Simulation of BMHVs
                                                                                  S. Annerel, J. Degroote, T. Claessens, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Van Ransbeeck, P. Seegers, P. Verdonck and J. Vierendeels
                                                                                  Computer Methods in Biomechanics and Biomedical Engineering, vol. 15, pp. 1281—1312, 2013
                                                                                7. Stochastic sensitivity analysis for timing and amplitude of pressure waves in the arterial system
                                                                                  V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                  International Journal for Numerical Methods in Biomedical Engineering, vol. 31, 2015, [DOI]
                                                                                8. A benchmark study of numerical schemes for one-dimensional arterial blood flow modelling
                                                                                  E. Boileau, P. Nithiarasu, P. J. Blanco, L. O. Muller, F. E. Fossan, L. R. Hellevik, W. P. Donders, W. Huberts, M. Willemet and J. Alastruey
                                                                                  International Journal for Numerical Methods in Biomedical Engineering, vol. 31, pp. 1—33, 2015, [DOI]
                                                                                9. Cardiovascular hemodynamics: Advancement of numerical and experimental diagnostic tools
                                                                                  Y. Morsi, L. R. Hellevik, A. Qiao, M. C. Vayalappil, J. Tu and W. Yang
                                                                                  Advances in Mechanical Engineering, vol. 7, pp. 1—3, 2015, [DOI]
                                                                                10. A guide to uncertainty quantification and sensitivity analysis for cardiovascular applications
                                                                                  V. G. Eck, W. P. Donders, J. Sturdy, J. Feinberg, T. Delhaas and L. R. Hellevik
                                                                                  International Journal for Numerical Methods in Biomedical Engineering, vol. 32, 2016, [DOI]
                                                                                11. Roadmap for cardiovascular circulation model
                                                                                  S. Safei, C. P. Bradley, V. Suresh, K. Mithraratne, A. Muller, H. Ho, D. Ladd, L. R. Hellevik, S. W. Omholt, J. G. Chase, L. O. Müller, S. M. Watanabe, P. J. Blanco, B. de Bono and P. J. Hunter
                                                                                  American Journal of Physiology, 2016, [DOI]
                                                                                12. Effects of arterial wall models and measurement uncertainties on cardiovascular model predictions
                                                                                  V. G. Eck, J. Sturdy and L. R. Hellevik
                                                                                  Journal of Biomechanics, 2017, [DOI]

                                                                                Refereed Proceedings

                                                                                1. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
                                                                                  L. R. Hellevik, S. K. Dahl and B. H. Skallerud
                                                                                  in MekIT-07, Fourth national conference on Computational Mechanics, 2007
                                                                                2. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
                                                                                  S. K. Dahl, L. R. Hellevik and B. H. Skallerud
                                                                                  in 8th world Congress on Computational Mechanics/5th European Congress on Computational Methods in Applied sciences and Engineering, Venice, Italy, 2008
                                                                                3. On Material Modelling of Umbilical Vein
                                                                                  P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
                                                                                  in Fifth National Conference on Computational Mechanics (MekIT´09), 2009
                                                                                4. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
                                                                                  S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
                                                                                  in MekIT'09. Fifth  national  conference  on  Computational  Mechanics, 2009
                                                                                5. Initial Study on Material Modeling of Umbilical Veins in Fetal Sheep
                                                                                  P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
                                                                                  in 6th World Congress of Biomechanics, 2010
                                                                                6. FSI Simulation of the Mitral Valve With Contact and Active Anisotropic Material Models
                                                                                  L. R. Hellevik, M. Astorino, P. Moireau, V. E. Prot, B. H. Skallerud and J.-F. Gerbeau
                                                                                  in 6th World Congress of Biomechanics, 2010
                                                                                7. A Strong Coupling FSI Scheme for Simulating BMHV Dynamics
                                                                                  S. Annerel, J. Degroote, T. Claessens, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Van Ransbeeck, P. Segers, P. Verdonck and J. Vierendeels
                                                                                  in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                8. A Biomechanical Model for Human Umbilical Veins and Wharton's Jelly
                                                                                  P. R. Leinan, V. E. Prot, C. N. van den Broek, T. Kiserud, B. H. Skallerud, L. R. Hellevik and F. N. van de Vosse
                                                                                  in 8th International Conference on Computational Fluid Dynamics in the Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                9. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                                                                  V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                                                  in 4th International Conference on Computational and Mathematical Biomedical Engineering (CMBE), Paris, June 29-July 3, 2015
                                                                                10. Towards robust clinical assessment of arterial compliance
                                                                                  J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                  in 28th Nordic Seminar on Computational Mechanics, 2015
                                                                                11. Uncertainty quantification of short term baroreflex regulation of blood pressure
                                                                                  J. Sturdy, V. G. Eck and L. R. Hellevik
                                                                                  in CMBE15, 4th International Conference on Computational & Mathematical Biomedical Engineering, 2015
                                                                                12. A Validation of Coupling Carotid and Aortic Baroreflex Models to a 1D Blood Flow Model of the Systemic Arterial Tree
                                                                                  J. Sturdy, V. G. Eck and L. R. Hellevik
                                                                                  in ICCB 2015, VI International Conference on Computational Bioengineering, 2015
                                                                                13. Uncertainty quantification and sensitivity analysis for wave propagation models of the arterial systemic circulation
                                                                                  V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                                                  in ICCB 2015, VI International Conference on Computational Bioengineering, Barcelona, 2015, 2015

                                                                                Conference Proceedings

                                                                                1. Stochastic arterial flow simulations
                                                                                  V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                  in Proceedings of the 27th Nordic Seminar on Computational Mechanics, 2014
                                                                                2. Effects of parametric uncertainty in blood flow simulations
                                                                                  V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                  in Virtual Physiological Human Conference 2014, Trondheim, 2014

                                                                                Talks

                                                                                1. Wave Propagation in the Human Fetal Ductus Venosus-Umbilical Vein Bifurcation
                                                                                  L. R. Hellevik
                                                                                  Talk at Reproductive Bioengineering, Wenns im Piztal, Austria, 2008
                                                                                2. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
                                                                                  S. K. Dahl, L. R. Hellevik and B. H. Skallerud
                                                                                  Presented at 8th.World Congress on Computational Mechanics (WCCM8)/5th European Congress on Computational Methods in Applied Sciences and Engineeering (ECCOMAS 2008), Venice, Italy, 2008
                                                                                3. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
                                                                                  S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
                                                                                  Talk at MekIT'09, Trondheim, May 27th, 2009
                                                                                4. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                                                                  V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                                                  4th International Conference on Computational and Mathematical Biomedical Engineering, France, 2015
                                                                                5. Towards robust clinical assessment of arterial compliance
                                                                                  J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                  28th Nordic Seminar on Computational Mechanics, 2015
                                                                                6. Plenary Lecture: Computational models for the cardiovascular system and uncertainty quantification
                                                                                  L. R. Hellevik
                                                                                  28th Nordic Seminar on Computational Mechanics (NSCM28), Tallinn, Estonia, 2015, October 22-23, 2015

                                                                                Susanne Hentschel

                                                                                  Articles in International Journals

                                                                                  1. Computational Vascular fluid-structure Interaction: Methodology and Application to Cerebral Aneurysms
                                                                                    B. Y., M.-C. Hsu, Y. Zhang, W. Wang, T. Kvamsdal, S. Hentschel and J. G. Isaksen
                                                                                    Biomechanics and Modeling in Mechanobiology, vol. 9, pp. 481—498, 2010, [DOI]
                                                                                  2. Characterization of Cyclical CSF Flow in the Foramen Magnum and Upper Cervical Spinal Canal With MR Flow Imaging and Computational Fluid Dynamics
                                                                                    S. Hentschel, K.-A. Mardal, A. E. Løvgren, S. Linge and V. Haughton
                                                                                    American Journal of Neuroradiology, vol. 31, pp. 997—1002, 2010, [DOI]

                                                                                  Conference Proceedings

                                                                                  1. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
                                                                                    O. C. Myklebust, S. Hentschel and K.-A. Mardal
                                                                                    in 21st Nordic Seminar on Computational Mechanics, 2008

                                                                                  Talks

                                                                                  1. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
                                                                                    O. C. Myklebust, S. Hentschel and K.-A. Mardal
                                                                                    Invited talk at the 21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
                                                                                  2. Scientific Computing at Simula
                                                                                    K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
                                                                                    Invited Talk at Workshop on Cerebral Aneurysms and Subarachnoidal Hemorrhage, Tromsø Jan 24-26, 2008
                                                                                  3. Blood Flow Computations at Simula
                                                                                    K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
                                                                                    Invited talk at Medical Physics, University of Wisconsin, March 11., 2008
                                                                                  4. Cerebral Blood Flow
                                                                                    K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
                                                                                    Invited talk at Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009, 2009
                                                                                  5. Patient-Specific Simulations of Stroke and Syringomyelia
                                                                                    K.-A. Mardal, S. Hentschel, A. Helgeland, H. P. Langtangen, S. Linge, A. E. Løvgren, A. Logg and K. Valen-Sendstad
                                                                                    Talk : Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, Nov 03, 2009
                                                                                  6. CSF Flow Modelling
                                                                                    K.-A. Mardal, V. Haughton, S. Hentschel, H. P. Langtangen, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                    Invited talk at CSR Flow Research Conference at University of Wisconsin, Nov 9, 2009
                                                                                  7. Patient-Specific Hemodynamics in FEniCS
                                                                                    K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
                                                                                    Invited talk at the minisymposium on Computational Vascular and Cardiovascular Mechanics at USNCCM 2009, 2009
                                                                                  8. Patient-Specific Hemodynamics in FEniCS
                                                                                    K.-A. Mardal, A. Logg, S. Hentschel, O. C. Myklebust and K. Valen-Sendstad
                                                                                    Presentation at the FEniCS 09 Workshop, 2009
                                                                                  9. Some Biomedical Applications at Simula
                                                                                    K.-A. Mardal, A. Helgeland, S. Hentschel, H. P. Langtangen, A. Logg, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                    Talk at the CBC Workshop on Computational Biology with UMB, 2009

                                                                                  S. Hetzel

                                                                                    Articles in International Journals

                                                                                    1. Peak CSF Velocities in Patients With Symptomatic and Asymptomatic Chiari I Malformation
                                                                                      K. D. Krueger, V. Haughton and S. Hetzel
                                                                                      American Journal of Neuroradiology, vol. 31, pp. 1837—1841, 2010

                                                                                    Karl Erik Holter

                                                                                      Articles in International Journals

                                                                                      1. Interstitial Solute Transport in 3D Reconstructed Neuropil Occurs by Diffusion Rather than Bulk Flow
                                                                                        K. E. Holter, B. Kehlet, A. Devor, T. J. Sejnowski, A. M. Dale, S. W. Omholt, O. P. Ottesen, E. A. Nagelhus, K.-A. Mardal and K. H. Pettersen
                                                                                        PNAS, 2017

                                                                                      Talks

                                                                                      1. Simulating the fluid flow of the lymphatic system - extracellular fluid flow
                                                                                        K.-A. Mardal, K. E. Holter and K. H. Pettersen
                                                                                        The 4th CSF symposium, Atlanta, 2017

                                                                                      Kartik Jain

                                                                                        Articles in International Journals

                                                                                        1. Direct numerical simulations of transitional hydrodynamics of the cerebrospinal fluid in Chiari I malformation – the role of cranio-vertebral junction
                                                                                          K. Jain, G. Ringstad, P.-K. Eide and K.-A. Mardal
                                                                                          International Journal for Numerical Methods in Biomedical Engineering, 2016
                                                                                        2. Transitional hemodynamics in intracranial aneurysms - Comparative velocity investigations with high resolution Lattice Boltzmann simulations, normal resolution ANSYS simulations and MR imaging
                                                                                          K. Jain, J. Jiang, C. Strother and K.-A. Mardal
                                                                                          Medical Physics, vol. 43, 2016

                                                                                        Refereed Proceedings

                                                                                        1. Exploring The Critical Reynolds Number For Transition In Intracranial Aneurysms–highly Resolved Simulations Below Kolmogorov Scales
                                                                                          K. Jain and K.-A. Mardal
                                                                                          in 4th International Conference on Computational and Mathematical Biomedical Engineering - CMBE2015, 2015

                                                                                        Theses

                                                                                        1. Transition to Turbulence in Physiological Flows: Direct Numerical Simulation of Hemodynamics in Intracranial Aneurysms and Cerebrospinal Fluid Hydrodynamics in the Spinal Canal
                                                                                          K. Jain
                                                                                          Ph.D. Thesis, UniPrint, University of Siegen, 2016

                                                                                        Talks

                                                                                        1. Cerebrospinal Fluid Flow in Association With the Central Nervous System - Chiari and Drug Delivery
                                                                                          K.-A. Mardal, K.-H. Støverud, M. Mortensen, K. Jain, B. Martin and S. Pahlavian
                                                                                          MS on Computational Biomechanics, WCCM-ECCM-ECCOM, 2014
                                                                                        2. Direct numerical simulations expose fluctuations in the cerebrospinal fluid hydrodynamics of Chiari malformation
                                                                                          K. Jain
                                                                                          ECI conference on CFD in Medicine and Biology II, Albufeira, Portugal, 2015, September, 2015
                                                                                        3. On the modeling of transitional physiological flows
                                                                                          K. Jain
                                                                                          ECCOMAS Young Investigators Conference, Aachen, Germany, 2015, July, 2015
                                                                                        4. Exploring the critical Reynolds number for transition in intracranial aneurysms
                                                                                          K. Jain
                                                                                          Computational and mathematical biomedical engineering, Cachan, France, 2015, July, 2015
                                                                                        5. Assessment and quantification of transitional flow in intracranial aneurysms
                                                                                          K. Jain
                                                                                          Summer biomechanics, bioengineering and biotransport conference, Utah, USA, 2015, June, 2015
                                                                                        6. On the complexity of the Cerebrospinal fluid flow in the upper spinal column – is the assumption of laminar flow appropriate?
                                                                                          K.-A. Mardal, K. Jain, K.-H. Støverud, G. Ringstad and P. K. Eide
                                                                                          Cerebrospinal Fluid Dynamics Society Meeting, Amiens, 2015
                                                                                        7. Experimental investigation of transitional effects at low Reynolds number in blood vessels - X-ray, microphones and simulations
                                                                                          K.-A. Mardal, V. Frostlid, A. Jensen and K. Jain
                                                                                          CMBE 2017, Pittsburgh, 2017

                                                                                        August Johansson

                                                                                          Articles in International Journals

                                                                                          1. Blockwise Adaptivity for Time Dependent Problems Based on Coarse Scale Adjoint Solutions
                                                                                            V. Carey, D. Estep, A. Johansson, M. G. Larson and S. Tavener
                                                                                            SIAM Journal on Scientific Computing, vol. 32, pp. 2121—2145, 2010
                                                                                          2. A High Order Discontinuous Galerkin Nitsche Method With Fictitous Boundary
                                                                                            A. Johansson and M. G. Larson
                                                                                            Numerische Mathematik, vol. 123, pp. 607—628, 2013, [DOI]
                                                                                          3. Adaptive Finite Element Solution of Multiscale PDE-ODE Systems
                                                                                            A. Johansson, J. Chaudhry, V. Carey, D. Estep, V. Ginting, M. G. Larson and S. Tavener
                                                                                            Computer Methods in Applied Mechanics and Engineering, vol. 287, pp. 150—171, 2015
                                                                                          4. The FEniCS Project Version 1.5
                                                                                            M. S. Alnæs, J. Blechta, J. E. Hake, A. Johansson, B. Kehlet, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
                                                                                            Archive of Numerical Software, vol. 3, 2015
                                                                                          5. High order cut finite element methods for the Stokes problem
                                                                                            A. Johansson, M. G. Larson and A. Logg
                                                                                            Advanced Modeling and Simulation in Engineering Sciences, vol. 2, 2015, [DOI]
                                                                                          6. A three-dimensional coupled Nitsche and level set method for electrohydrodynamic potential flows in moving domains
                                                                                            A. Johansson, M. Garzon and J. A. Sethian
                                                                                            Journal of Computational Physics, vol. 309, pp. 88—111, 2016

                                                                                          Refereed Proceedings

                                                                                          1. Computing through singularities in potential flow with applications to electrohydrodynamic problems
                                                                                            M. Garzon, J. A. Sethian, L. J. Gray and A. Johansson
                                                                                            in The 19th European Conference on Mathematics for Industry, 2016

                                                                                          Conference Proceedings

                                                                                          1. Shape Optimization with Multiple Meshes
                                                                                            J. S. Dokken, S. W. Funke, A. Johansson and S. Schmidt
                                                                                            in FEniCS Conference 2017, 2017

                                                                                          Talks

                                                                                          1. A fully 3D hybrid Nitsche and Level Set methods for electrohydrodynamic potential flows in moving domains
                                                                                            A. Johansson
                                                                                            6th European Conference on Compuational Fluid Dynamics, Barcelona, 2014
                                                                                          2. A High Order Nitsche Cut Finite Element Method for Elliptic Problems
                                                                                            A. Johansson
                                                                                            27th Nordic Seminar on Computational Mechanics, 2014
                                                                                          3. Blockwise Adaptive Finite Element Solution of a Coupled PDE-ODE System
                                                                                            A. Johansson
                                                                                            Chalmers University of Technology, 2014
                                                                                          4. Usable Structured Meshes: How to do efficient adaptivity and how to handle complex geometries
                                                                                            A. Johansson
                                                                                            Center for Biomedical Computing, 2014
                                                                                          5. In and Out of Tune
                                                                                            A. Johansson
                                                                                            Center for Biomedical Computing, 2014
                                                                                          6. A High Order DG Cut Finite Element Method for Elliptic Problems
                                                                                            A. Johansson and M. G. Larson
                                                                                            Simula Research Laboratory, 2014
                                                                                          7. A short introduction to discontinuous Petrov-Galerkin methods
                                                                                            A. Johansson
                                                                                            Biocomp seminar, 2014
                                                                                          8. High Order Cut Finite Elements Methods
                                                                                            A. Johansson
                                                                                            SIAM CSE 15, Salt Lake City, 2015
                                                                                          9. High Order Cut Finite Element Methods for the Stokes Problem using Fenics Multimesh Features
                                                                                            A. Johansson
                                                                                            FEniCS '15, London, 2015
                                                                                          10. Nitsche Cut Finite Element Methods with Higher Order Elements
                                                                                            A. Johansson
                                                                                            USNCCM13, San Diego, 2015
                                                                                          11. Cut composite mesh methods
                                                                                            A. Johansson
                                                                                            Enumath 2015, Ankara, 2015
                                                                                          12. MultiMesh: FEM on arbitrarily many intersecting meshes
                                                                                            A. Johansson
                                                                                            Crete, Greece, 2016
                                                                                          13. Automatic Adjoints of Multimesh Finite Element Discretisations
                                                                                            S. W. Funke, J. S. Dokken, A. Johansson and S. Schmidt
                                                                                            Atlanta, USA, 2017
                                                                                          14. Shape Optimization with Multiple Meshes
                                                                                            J. S. Dokken, S. W. Funke, A. Johansson and S. Schmidt
                                                                                            Luxenbourg, 2017
                                                                                          15. Optimization Problems in Dynamical Domains with Unfitted Meshes
                                                                                            S. W. Funke, J. S. Dokken, A. Johansson and S. Schmidt
                                                                                            X-DMS 2017, Umeå, 2017
                                                                                          16. High order methods on arbitrarily many intersecting meshes: Multimesh
                                                                                            A. Johansson, B. Kehlet, M. G. Larson and A. Logg
                                                                                            FEF 2017, Rome, 2017
                                                                                          17. FEM on arbitrarily many intersecting meshes: Multimesh
                                                                                            A. Johansson, B. Kehlet, M. G. Larson and A. Logg
                                                                                            European Finite element fair, 2017, Milano, 2017

                                                                                          Siri Kallhovd

                                                                                            Articles in International Journals

                                                                                            1. Adjoint-based estimation of cardiac activation times
                                                                                              S. Kallhovd, M. Maleckar and M. E. Rognes
                                                                                              International Journal for Numerical Methods in Biomedical Engineering, 2017

                                                                                            Refereed Proceedings

                                                                                            1. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythmogenic cardiomyopathy
                                                                                              S. Kallhovd, S. U. Gjerald, O. Maennel, J. Saberniak, K. Haugaa and M. Maleckar
                                                                                              in E-Health and Bioengineering Conference (EHB), 2015

                                                                                            Theses

                                                                                            1. Computational tools for clinically driven models of cardiac electro-mechanics
                                                                                              S. Kallhovd
                                                                                              Ph.D. Thesis, University of Oslo, 2017

                                                                                            Talks

                                                                                            1. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythomogenic cardiomyopathy
                                                                                              S. Kallhovd, V. Mezzano, S. U. Gjerald, J. Saberniak, F. Sheikh, H. Haugaa and M. Maleckar
                                                                                              VPH 2014, Trondheim, Norway, 2014
                                                                                            2. Significance of passive material parameters in mechanical models of the heart
                                                                                              S. Kallhovd, J. Sundnes and S. Wall
                                                                                              Lugano, Switzerland, 2015
                                                                                            3. Impact of material parameter uncertainty on stress in patient specific models of the heart
                                                                                              J. Sundnes, S. Kallhovd and S. Wall
                                                                                              SIAM Conference on uncertainty quantification, Lausanne, Switzerland, 2016
                                                                                            4. Impact of material parameter variations on stress in patient specific models of the heart
                                                                                              J. Sundnes, S. Kallhovd and S. Wall
                                                                                              World Congress on Computational Mechanics, Seoul, South Korea, 2016

                                                                                            Posters

                                                                                            1. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythomogenic cardiomyopathy
                                                                                              S. Kallhovd, V. Mezzano, S. U. Gjerald, J. Saberniak, F. Sheikh, H. Haugaa and M. Maleckar
                                                                                              Biophysical Society 58th Annual Meeting, 2014
                                                                                            2. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythomogenic cardiomyopathy
                                                                                              S. Kallhovd, V. Mezzano, S. U. Gjerald, J. Saberniak, F. Sheikh, H. Haugaa and M. Maleckar
                                                                                              Copenhagen Meeting on Cardiac Arrhythmia, May 19-22, 2014, 2014

                                                                                            Kenneth Hvistendah Karlsen

                                                                                              Articles in International Journals

                                                                                              1. An Explicit Finite Difference Scheme for the Camassa-Holm Equation
                                                                                                G. M. Coclite, K. H. Karlsen and N. H. Risebro
                                                                                                Advances in Differential Equations, vol. 13, pp. 681—732, 2008
                                                                                              2. A Convergent Nonconforming Finite Element Method for Compressible Stokes Flow
                                                                                                K. H. Karlsen and T. K. Karper
                                                                                                SIAM Journal on Numerical Analysis, vol. 48, pp. 1846—1876, 2010, [DOI]

                                                                                              Stavros C. Kassinos

                                                                                                Articles in International Journals

                                                                                                1. Direct Simulation of the Limiting Flux: I. Interpretation of the Experimental Results
                                                                                                  S. Ma, S. C. Kassinos and D. Kassinos
                                                                                                  Journal of Membrane Science, vol. 337, pp. 81—91, 2009, [DOI]
                                                                                                2. Analytic Models of Heterogenous Magnetic Fields for Liquid Metal Flow Simulations
                                                                                                  E. V. Votyakov, S. C. Kassinos and X. Albets-Chico
                                                                                                  Theoretical and Computational Fluid Dynamics, vol. 23, pp. 571—578, 2009, [DOI]
                                                                                                3. Lagrangian Particle Dispersion in Turbulent Flow Over a Wall Mounted Obstacle
                                                                                                  D. G. E. Grigoriadis and S. C. Kassinos
                                                                                                  International Journal of Heat and Fluid Flow, vol. 30, pp. 462—470, 2009, [DOI]
                                                                                                4. Immersed Boundary Method for the MHD Flows of Liquid Metals
                                                                                                  D. G. E. Grigoriadis, S. C. Kassinos and E. V. Votyakov
                                                                                                  Journal of Computational Physics, vol. 228, pp. 903—920, 2009
                                                                                                5. MHD Flow Past a Circular Cylinder Using the Immersed Boundary Method
                                                                                                  D. G. E. Grigoriadis, I. E. Sarris and S. C. Kassinos
                                                                                                  Computers & Fluids, vol. 39, pp. 345—358, 2010, [DOI]

                                                                                                Refereed Proceedings

                                                                                                1. Lagrangian Particle Dispersion in Turbulent Flow Over a Wall Mounted Obstacle
                                                                                                  D. G. E. Grigoriadis and S. C. Kassinos
                                                                                                  in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
                                                                                                2. Efficient Simulations of Wall Bounded Magnetohydrodynamics Flows
                                                                                                  D. G. E. Grigoriadis and S. C. Kassinos
                                                                                                  in 6th GRACN International Congress on Computational Mechanics, 2008
                                                                                                3. Modeling Particle Deposition in the Human Lungs
                                                                                                  H. Radhakrishnan and S. C. Kassinos
                                                                                                  in 6th GRACM International Congress on Computational Mechanics, 2008
                                                                                                4. Using LES to Model Turbulent Particle Transport in Lungs
                                                                                                  H. Radhakrishnan and S. C. Kassinos
                                                                                                  in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
                                                                                                5. CFD Modeling of Turbulent Flow and Particle Deposition in Human Lungs
                                                                                                  H. Radhakrishnan and S. C. Kassinos
                                                                                                  in Conference Proceedings of the International Conference of IEEE Engineering in Medicine and Biology Society (2009), 2009
                                                                                                6. Extension of the Immersed Boundary Method for Liquid-Metal Magnetohydrodynamics
                                                                                                  D. G. E. Grigoriadis and S. C. Kassinos
                                                                                                  in Immersed Boundary Methods: Current status and Future Research Directions, 2009
                                                                                                7. Turbulent Effects of Liquid Metal Flow Under Strong Fringing Magnetic Fields
                                                                                                  X. Albets-Chico, D. G. E. Grigoriadis, S. C. Kassinos and B. Knaepen
                                                                                                  in 6th International Symposium on Turbulence and Shear Flow Phenomena, 2009
                                                                                                8. Using LES to Model Turbulent Particle Transport in Human Lungs
                                                                                                  H. Radhakrishnan and S. C. Kassinos
                                                                                                  in The 6th International Symposium on Turbulence and Shear Flow Phenomena (TSFP6), 2009
                                                                                                9. Numerical Modeling of Turbulent Airflow and Particle Deposition in a Bifurcating Airway Model
                                                                                                  H. Radhakrishnan and S. C. Kassinos
                                                                                                  in World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, 2010

                                                                                                Benjamin Kehlet

                                                                                                  Articles in International Journals

                                                                                                  1. The FEniCS Project Version 1.5
                                                                                                    M. S. Alnæs, J. Blechta, J. E. Hake, A. Johansson, B. Kehlet, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
                                                                                                    Archive of Numerical Software, vol. 3, 2015
                                                                                                  2. A posteriori error analysis of round-off errors in the numerical solution of ordinary differential equations
                                                                                                    B. Kehlet and A. Logg
                                                                                                    Numerical Algorithms, vol. 76, 2017, [DOI]
                                                                                                  3. Interstitial Solute Transport in 3D Reconstructed Neuropil Occurs by Diffusion Rather than Bulk Flow
                                                                                                    K. E. Holter, B. Kehlet, A. Devor, T. J. Sejnowski, A. M. Dale, S. W. Omholt, O. P. Ottesen, E. A. Nagelhus, K.-A. Mardal and K. H. Pettersen
                                                                                                    PNAS, 2017

                                                                                                  Refereed Proceedings

                                                                                                  1. A Reference Solution for the Lorenz System on [0, 1000]
                                                                                                    B. Kehlet and A. Logg
                                                                                                    in AIP Conference Proceedings, 2010
                                                                                                  2. Automatically Generated Solvers for Variational Formulations of Time-Dependent Partial Differential Equations
                                                                                                    M. E. Rognes, B. Kehlet and A. Logg
                                                                                                    in 6th European Congress on Computational Methods in Applied Sciences and Engineering, ECCOMAS 2012, 2012
                                                                                                  3. Quantifying the Computability of the Lorenz System
                                                                                                    B. Kehlet and A. Logg
                                                                                                    in Proceedings of the VI International Conference on Adaptive Modeling and Simulation (ADMOS 2013), 2013

                                                                                                  Talks

                                                                                                  1. Analysis and Implementation of High-Precision Finite Element Methods for Ordinary Differential Equations With Application to the Lorenz System
                                                                                                    B. Kehlet
                                                                                                    AC/DC seminar series, 2010
                                                                                                  2. Meshbuilder Brainstorming
                                                                                                    B. Kehlet
                                                                                                    AC/DC seminar series, 2010
                                                                                                  3. A Reference Solution for the Lorenz System on [0, 1000]
                                                                                                    B. Kehlet and A. Logg
                                                                                                    8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
                                                                                                  4. Code Generation for ODEs
                                                                                                    B. Kehlet
                                                                                                    Talk at Biocomp Seminar, Simula Research Laboratory, 2011
                                                                                                  5. Code Generation for Time Dependent Problems
                                                                                                    B. Kehlet
                                                                                                    Talk at FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, 2011
                                                                                                  6. Robust Mesh Generation
                                                                                                    B. Kehlet
                                                                                                    CBC Seminar series, 2012
                                                                                                  7. Quantifying the Computability of the Lorenz System
                                                                                                    B. Kehlet
                                                                                                    International Conference on Adaptive Modeling and Simulation (ADMOS2013), 2013
                                                                                                  8. Mshr - Mesh Generation in FEniCS
                                                                                                    B. Kehlet
                                                                                                    Talk at FEniCS'14 workshop in Paris, 2014
                                                                                                  9. Towards a Unified Framework for Automated a Posteriori Error Estimation and Adaptivity in Space-Time
                                                                                                    M. E. Rognes, B. Kehlet, A. Logg and M. S. Alnæs
                                                                                                    SIAM CSE, Salt Lake City, USA, 2015
                                                                                                  10. Implicitly adaptive time stepping
                                                                                                    B. Kehlet
                                                                                                    Oslo, Simula Research Laboratory, 2015
                                                                                                  11. High order methods on arbitrarily many intersecting meshes: Multimesh
                                                                                                    A. Johansson, B. Kehlet, M. G. Larson and A. Logg
                                                                                                    FEF 2017, Rome, 2017
                                                                                                  12. FEM on arbitrarily many intersecting meshes: Multimesh
                                                                                                    A. Johansson, B. Kehlet, M. G. Larson and A. Logg
                                                                                                    European Finite element fair, 2017, Milano, 2017

                                                                                                  Public Outreach

                                                                                                  1. Små feil, store konsekvenser
                                                                                                    B. Kehlet
                                                                                                    Åpen dag, Universitetet i Oslo, 2015

                                                                                                  Owais Mohammad Khan

                                                                                                    Articles in International Journals

                                                                                                    1. Narrowing the Expertise Gap for Predicting Intracranial Aneurysm Hemodynamics: Impact of Solver Numerics versus Mesh and Time-Step Resolution
                                                                                                      O. M. Khan, K. Valen-Sendstad and D. A. Steinman
                                                                                                      American Journal of Neuroradiology, vol. 36, 2015
                                                                                                    2. The Computational Fluid Dynamics Rupture Challenge 2013—Phase II: variability of hemodynamic simulations in two intracranial aneurysms
                                                                                                      P. Berg, C. Roloff, O. Beuing, S. Voss, S.-I. Sugiyama, N. Aristokleous, A. S. Anayiotos, N. Ashton, A. Revell, N. W. Bressloff, A. G. Brown, B. J. Chung, J. R. Cebral, G. Copelli, W. Fu, A. Qiao, A. J. Geers, S. Hodis, D. Dragomir-Daescu, E. Nordahl, Y. B. Suzen, O. M. Khan, K. Valen-Sendstad, K. Kono, P. G. Menon, P. G. Albal, O. Mierka, R. Münster, H. G. Morales, O. Bonnefous, J. Osman, L. Goubergrits, J. Pallares, S. Cito, A. Passalacqua, S. Piskin, K. Pekkan, S. Ramalho, N. Marques, S. Sanchi, K. R. Schumacher, J. Sturgeon, H. Svihlová, J. Hron, G. Usera, M. Mendina, J. Xiang, D. A. Steinman and G. Janiga
                                                                                                      Journal of Biomechanical Engineering, vol. 137, pp. 121008/1—121008/13, 2015
                                                                                                    3. Non-Newtonian versus Numerical Rheology: Practical Impact Of Shear-thinning On The Prediction Of Stable And Unstable Flows In Intracranial Aneurysms.
                                                                                                      O. M. Khan, D. A. Steinman and K. Valen-Sendstad
                                                                                                      International Journal for Numerical Methods in Biomedical Engineering, 2016
                                                                                                    4. On the Quantification and Visualization of Transient Periodic Instabilities in Pulsatile Flows
                                                                                                      O. M. Khan, C. Chnafa, D. Gallo, F. Molinari, U. Morbiducci, D. A. Steinman and K. Valen-Sendstad
                                                                                                      Journal of Biomechanics, 2016
                                                                                                    5. Cerebral aneurysm blood flow simulations: There’s solver settings and then there’s solver settings
                                                                                                      O. M. Khan, K. Valen-Sendstad and D. A. Steinman
                                                                                                      Journal of Biomechanics, 2017

                                                                                                    Refereed Proceedings

                                                                                                    1. Numerical Resolution Requirements for Converging Wall Shear Stresses in Intracranial Aneurysms
                                                                                                      O. M. Khan, K. Valen-Sendstad and D. A. Steinman
                                                                                                      in World Congress of Biomechanics Proceedings, 2014
                                                                                                    2. CFD Simulation of Transition to Turbulence for Newtonian vs. Non-Newtonian Flow Through a Stenosis
                                                                                                      O. M. Khan, K. Valen-Sendstad, D. Biswas, D. Casey, F. Loth and D. A. Steinman
                                                                                                      in The Summer Biomechanics, Bioengineering & Biotransport Conference, 2015
                                                                                                    3. Impact of Non-Newtonian Rheology in Transition to Turbulence in Artery Models.
                                                                                                      D. A. Steinman, O. M. Khan, K. Valen-Sendstad, D. Biswas, D. Casey and F. Loth
                                                                                                      in 4th International Conference on Computational and Mathematical Biomedical Engineering, 2015
                                                                                                    4. Effects of non-Newtonian rheology on transition to turbulence
                                                                                                      O. M. Khan, K. Valen-Sendstad and D. A. Steinman
                                                                                                      in The 2015 AMMCS-CAIMS Congress, 2015
                                                                                                    5. Proper Orthogonal Decomposition Analyses of High-Frequency Transient Flow Instabilities in Intracranial Aneurysms
                                                                                                      O. M. Khan, C. Chnafa, K. Valen-Sendstad and D. A. Steinman
                                                                                                      in American Physical Society Division of Fluid Dynamics, 2016
                                                                                                    6. Non-Newtonian versus Numerical Rheology: Practical Impact Of Shear-thinning On The Prediction Of Stable And Unstable Flows In Intracranial Aneurysms.
                                                                                                      O. M. Khan, D. A. Steinman and K. Valen-Sendstad
                                                                                                      in American Society of Mechanical Engineers Summer Biomechanics, Bioengineering and Biotransport Conference, 2016

                                                                                                    Theses

                                                                                                    1. Numerical characterization of high-frequency flow fluctuations in intracranial aneurysms
                                                                                                      O. M. Khan
                                                                                                      Ph.D. Thesis, 2017

                                                                                                    Talks

                                                                                                    1. CFD Modelling of Cerebrovascular Hemodynamics: Breaking News
                                                                                                      K. Valen-Sendstad, O. M. Khan, M. Piccinelli and D. A. Steinman
                                                                                                      9th international symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, Montreal, Canada, April, 2014, 2014
                                                                                                    2. On Numerical Methods for Transitional Flow - Application to Blood Flow in Aneurysms
                                                                                                      K.-A. Mardal, O. M. Khan and K. Valen-Sendstad
                                                                                                      Quality and Validation of Computational Cardio-vascular Biomechanics, WCCM-ECCM-ECCOM, 2014
                                                                                                    3. It's not the size, but what you do with it: CFD solver settings trump model resolution.
                                                                                                      K. Valen-Sendstad, O. M. Khan, M. Piccinelli and D. A. Steinman
                                                                                                      Zurich, 2014

                                                                                                    Timo Klock

                                                                                                      Talks

                                                                                                      1. Support Recovery in Unmixing Problems using Multi-Penalty Regularization
                                                                                                        T. Klock
                                                                                                        Hangzhou, 2017

                                                                                                      Posters

                                                                                                      1. Exact support recovery in unmixing problems by an altered Lasso-path algorithm for multi-penalty functionals
                                                                                                        T. Klock
                                                                                                        2017

                                                                                                      Jussi Koivumäki

                                                                                                        Articles in International Journals

                                                                                                        1. Benchmarking Electrophysiological Models of Human Atrial Myocytes
                                                                                                          M. Wilhelms, H. Hettmann, M. Maleckar, J. Koivumäki, O. Dössel and G. Seemann
                                                                                                          Frontiers in Computational Physiology and Medicine, vol. 3, 2013
                                                                                                        2. NS5806 Partially Restores Action Potential Duration But Fails to Ameliorate Calcium Transient Dysfunction in a Computational Model of Canine Heart Failure
                                                                                                          M. Maleckar, G. T. Lines, J. Koivumäki, J. M. Cordeiro and K. Calloe
                                                                                                          Europace, vol. 16, pp. iv46—iv55, 2014
                                                                                                        3. Variable T-Tubule Organization and Ca2+ Homeostasis Across the Atria
                                                                                                          M. Frisk, J. Koivumäki, P. A. Norseng, M. Maleckar, O. M. Sejersted and W. E. Louch
                                                                                                          Heart and Circulatory Physiology, vol. 307, pp. H609—H620, 2014
                                                                                                        4. In Silico Screening of the Key Cellular Remodeling Targets in Chronic Atrial Fibrillation
                                                                                                          J. Koivumäki, G. Seemann, M. Maleckar and P. Tavi
                                                                                                          PLoS Computational Biology, vol. 10(5), 2014
                                                                                                        5. Investigations of the NaVβ1b Sodium Channel Subunit in Human Ventricle; Functional Characterization of the H162P Brugada Syndrome Mutant
                                                                                                          L. Yuan, J. Koivumäki, B. Liang, L. G. Lorentzen, J. H. Svendsen, J. Tfelt-Hansen, M. Maleckar, N. Schmitt, M. S. Olesen and T. Jespersen
                                                                                                          Heart and Circulatory Physiology, vol. 306, pp. H1204—H1212, 2014
                                                                                                        6. Na+ Current Expression in Human Atrial Myofibroblasts: Its Identity and Functional Consequences
                                                                                                          J. Koivumäki, R. Clark, D. Belke, C. Kondo, P. Fedak, M. Maleckar and W. R. Giles
                                                                                                          Frontiers in Physiology, vol. 5, pp. 275, 2014
                                                                                                        7. Calcium Signaling in Developing Cardiomyocytes: Implications for Model Systems and Disease
                                                                                                          W. E. Louch, J. Koivumäki and P. Tavi
                                                                                                          The Journal of Physiology, vol. 593, pp. 1047—1063, 2015, [DOI]

                                                                                                        Chapters in Books

                                                                                                        1. Calcium Dynamics
                                                                                                          J. Koivumäki
                                                                                                          in Encyclopedia of Applied and Computational Mathematics, Edited by B. Engquist, Springer, pp. 169—170, 2015

                                                                                                        Talks

                                                                                                        1. Computational Modeling of Intracellular Calcium Dynamics in Human Atrial Myocytes: Impact on Action Potential Morphology
                                                                                                          J. Koivumäki
                                                                                                          Seminar at the Technical University of Dresden, Germany, 2011
                                                                                                        2. Divergent Action Potential Morphology in Human Atrial Cells Vs. Tissue: Underlying Ionic Mechanisms
                                                                                                          J. Koivumäki, T. Christ, G. Seemann and M. Maleckar
                                                                                                          Computing in Cardiology conference, 2012
                                                                                                        3. Calcium Buffering in Human Atrial Myocytes
                                                                                                          J. Koivumäki, M. Maleckar, T. Christ and N. Rozmaritsa
                                                                                                          CaMo-UCSD Workshop, San Diego, USA, 2012
                                                                                                        4. Excitation-Contraction Coupling in Human Atrial Myocytes: Remodeling in Atrial Fibrillation
                                                                                                          J. Koivumäki and P. Tavi
                                                                                                          Seminar at the Institute of Biomedical Engineering, KIT, Germany, 2012
                                                                                                        5. Re-Parametrisation of Atrial INa: INa,late and DV/dtmax Dependence on RMP As Test Cases
                                                                                                          J. Koivumäki
                                                                                                          NECCEVISEE Workshop, 2013
                                                                                                        6. Human Atrial Myocyte Studies in Silico
                                                                                                          J. Koivumäki
                                                                                                          NECCEVISEE Workshop, 2013
                                                                                                        7. Action Potential Repolarisation in Healthy and Fibrillating Human Atria: Contribution of Small Conductance Calcium-Activated Potassium Channels
                                                                                                          J. Koivumäki, L. Skibsbye, T. Christ, M. Maleckar and T. Jespersen
                                                                                                          Conference of the Scandinavian Physiological Society, 2014
                                                                                                        8. Computational Models of Cardiac Electrophysiology in Healthy and Fibrillating Human Atria
                                                                                                          J. Koivumäki
                                                                                                          Seminar at the Institute of Experimental and Clinical Pharmacology and Toxicology, UKE, Hamburg, 2014

                                                                                                        Posters

                                                                                                        1. Excitation-contraction Coupling in Human Atrial Myocytes: Remodeling in Atrial Fibrillation
                                                                                                          J. Koivumäki
                                                                                                          2011
                                                                                                        2. Rate-Dependent Regulation of Sarcoplasmic Reticulum Ca2+ ATPase in Human Atrial Myocytes
                                                                                                          J. Koivumäki
                                                                                                          2011
                                                                                                        3. Divergent Action Potential Morphology in Human Atrial Cells Vs. Tissue: Underlying Ionic Mechanisms
                                                                                                          J. Koivumäki, T. Christ, G. Seemann and M. Maleckar
                                                                                                          2012
                                                                                                        4. NS5806 Partially Restores APD But Fails to Ameliorate Ca2+ Transient Dysfunction in a Computational Model of Canine Heart Failure
                                                                                                          M. Maleckar, G. T. Lines, J. Koivumäki, K. Calloe and J. Cordeiro
                                                                                                          Europace 2014, 2013
                                                                                                        5. Ca2+-Transient Dysfunction and Ion Channel Therapy: What Can We Gather From a Computational Model of Canine Heart Failure?
                                                                                                          M. Maleckar, G. T. Lines and J. Koivumäki
                                                                                                          , 2013
                                                                                                        6. Mechanisms Promoting Chronic Atrial Fibrillation: Role of Remodelled Intracellular Calcium Handling and Cellular Hypertrophy
                                                                                                          J. Koivumäki, M. Maleckar and P. Tavi
                                                                                                          2013
                                                                                                        7. The Controversial Late INa in Human Atrial Myocytes: a Computational Analysis of Ranolazine's Effects
                                                                                                          J. Koivumäki, T. Christ, U. Ravens and M. Maleckar
                                                                                                          2013
                                                                                                        8. Action Potential Repolarisation in Healthy and Fibrillating Human Atria: Contribution of Small Conductance Calcium-Activated Potassium Channels
                                                                                                          J. Koivumäki, L. Skibsbye, T. Christ, M. Maleckar and T. Jespersen
                                                                                                          2014

                                                                                                        Miroslav Kuchta

                                                                                                          Articles in International Journals

                                                                                                          1. Preconditioners for saddle point systems with trace constraints coupling 2D and 1D domains
                                                                                                            M. Kuchta, M. Nordaas, J. C. G. Verschaeve, M. Mortensen and K.-A. Mardal
                                                                                                            SIAM Journal of Scientific Computing, vol. 38, 2016
                                                                                                          2. A numerical investigation of intrathecal drug and gene vector dispersion within the cervical subarachnoid space
                                                                                                            P. T. Haga, G. Pizzichelli, M. Mortensen, M. Kuchta, S. H. Pahlavian, E. Sinibaldi, B. A. Martin and K.-A. Mardal
                                                                                                            Plos One, 2017, [DOI]

                                                                                                          Refereed Proceedings

                                                                                                          1. A Second Order Fast Sweeping Method for the Eikonal Equation Based on Minimization
                                                                                                            M. Kuchta and M. Mortensen
                                                                                                            in The Nordic Seminar on Computational Mechanics, 2013
                                                                                                          2. Characterization of the space of rigid motions in arbitrary domains
                                                                                                            M. Kuchta, K.-A. Mardal and M. Mortensen
                                                                                                            in MekIT'15 8th National Conference on Computational Mechanics, 2015
                                                                                                          3. BEND|P|Y: Python framework for computing bending of complex plate-beam systems
                                                                                                            M. Mortensen, M. Kuchta, K.-A. Mardal and J. Verschaeve
                                                                                                            in MekIT'15 8th National Conference on Computational Mechanics, 2015

                                                                                                          Theses

                                                                                                          1. Preconditioners for Singular Problems and Coupled Problems with Domains of Different Dimensionality
                                                                                                            M. Kuchta
                                                                                                            Ph.D. Thesis, 2017

                                                                                                          Talks

                                                                                                          1. Solving singular problems. The right way.
                                                                                                            M. Kuchta
                                                                                                            FEniCS'16 Workshop, Simula Research Laboratory, Oslo, Norway, 2016

                                                                                                          Nina Kylstad

                                                                                                            Talks

                                                                                                            1. Effect of Spinal Cord Viscoelasticity on Its Response to CSF Pressure Waves: a Computational Study
                                                                                                              N. Kylstad, K.-A. Mardal, V. Haughton and M. E. Rognes
                                                                                                              ASNR 53rd Annual Meeting & The Foundation of the ASNR Symposium 2015, April 25 – 30, Chicago, Illinois, 2015

                                                                                                            Jérémie Lagravière

                                                                                                              Refereed Proceedings

                                                                                                              1. On the Performance and Energy Efficiency of the PGAS Programming Model on Multicore Architectures
                                                                                                                J. Lagravière, J. Langguth, M. Sourouri and X. Cai
                                                                                                                in High Performance Computing & Simulation (2016) - International Workshop on Optimization of Energy Efficient HPC & Distributed Systems, 2016

                                                                                                              Technical Reports

                                                                                                              1. Is PGAS ready for the challenge of energy efficiency? A study with the NAS benchmark.
                                                                                                                J. Lagravière, P. H. Ha and X. Cai
                                                                                                                UiT, 2015

                                                                                                              Johannes Langguth

                                                                                                                Articles in International Journals

                                                                                                                1. Parallel performance modeling of irregular applications in cell-centered finite volume methods over unstructured tetrahedral meshes
                                                                                                                  J. Langguth, N. Wu, J. Chai and X. Cai
                                                                                                                  Journal of Parallel and Distributed Computing, vol. 76, pp. 120—131, 2015, [DOI]
                                                                                                                2. Scalable heterogeneous CPU-GPU computations for unstructured tetrahedral meshes
                                                                                                                  J. Langguth, M. Sourouri, G. T. Lines, S. Baden and X. Cai
                                                                                                                  IEEE Micro, vol. 35, pp. 6—15, 2015, [DOI]
                                                                                                                3. Accelerating Detailed Tissue-Scale 3D Cardiac Simulations Using Heterogeneous CPU-Xeon Phi Computing
                                                                                                                  J. Langguth, Q. Lan, N. Gaur and X. Cai
                                                                                                                  International Journal of Parallel Programming, pp. 1—23, 2016, [DOI]

                                                                                                                Refereed Proceedings

                                                                                                                1. Heterogeneous CPU-GPU Computing for the Finite Volume Method on 3D Unstructured Meshes
                                                                                                                  J. Langguth and X. Cai
                                                                                                                  in 20th International Conference on Parallel and Distributed Systems (ICPADS 2014), 2014
                                                                                                                2. CPU+GPU Programming of Stencil Computations for Resource-Efficient Use of GPU Clusters
                                                                                                                  M. Sourouri, J. Langguth, F. Spiga, S. Baden and X. Cai
                                                                                                                  in IEEE 18th International Conference on Computational Science and Engineering, 2015
                                                                                                                3. Optimizing Approximate Weighted Matching on Nvidia Kepler K40
                                                                                                                  M. Naim, F. Manne, M. Halappanavar, A. Tumeo and J. Langguth
                                                                                                                  in IEEE International Conference on High Performance Computing (HiPC), 2015
                                                                                                                4. Towards Detailed Tissue-Scale 3D Simulations of Electrical Activity and Calcium Handling in the Human Cardiac Ventricle
                                                                                                                  Q. Lan, N. Gaur, J. Langguth and X. Cai
                                                                                                                  in The 15th International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP 2015), 2015
                                                                                                                5. On the Performance and Energy Efficiency of the PGAS Programming Model on Multicore Architectures
                                                                                                                  J. Lagravière, J. Langguth, M. Sourouri and X. Cai
                                                                                                                  in High Performance Computing & Simulation (2016) - International Workshop on Optimization of Energy Efficient HPC & Distributed Systems, 2016
                                                                                                                6. Enabling Tissue-Scale Cardiac Simulations Using Heterogeneous Computing on Tianhe-2
                                                                                                                  J. Langguth, Q. Lan, N. Gaur, X. Cai and M. Wen
                                                                                                                  in IEEE 22nd International Conference on Parallel and Distributed Systems (ICPADS), 2016

                                                                                                                Talks

                                                                                                                1. Heterogeneous HPC solutions in cardiac electrophysiology
                                                                                                                  J. Langguth
                                                                                                                  Lawrence Berkeley National Laboratory, Berkeley, CA, USA, 2016
                                                                                                                2. Hierarchical partitioning of unstructured meshes in cardiac electrophysiology
                                                                                                                  J. Langguth
                                                                                                                  Third Workshop on Programming Abstractions for Data Locality (PADAL'16), Kobe, Japan, 2016
                                                                                                                3. Heterogeneous Manycore Simulations in Cardiac Electrophysiology
                                                                                                                  J. Langguth, X. Cai and J. Chai
                                                                                                                  Tenth International Workshop on Programmability and Architectures for Heterogeneous Multicores (MULTIPROG-2017), Stockholm, Sweden, 2017

                                                                                                                Hans Petter Langtangen

                                                                                                                  Articles in International Journals

                                                                                                                  1. A Sharp Interface Finite Element Method for Elliptic Interface Problems; Formulation and Investigation in One Space Dimension
                                                                                                                    K. Holmås and H. P. Langtangen
                                                                                                                    International Journal of Pure and Applied Mathematics, vol. 34, pp. 287—312, 2007
                                                                                                                  2. A Finite Element Method for Modelling Electromechanical Wave Propagation in Anisotropic Piezoelectric Media
                                                                                                                    S. Rahman, H. P. Langtangen and C. H. W. Barnes
                                                                                                                    Communications in Computational Physics, vol. 2, pp. 271—292, 2007
                                                                                                                  3. Pulse-Induced Acoustoelectric Vibrations in Surface-Gated GaAs-Based Quantum Devices
                                                                                                                    S. Rahman, T. M. Stace, H. P. Langtangen, M. Kataoka and C. H. W. Barnes
                                                                                                                    Physical Review B: Condensed Matter and Materials Physics, vol. 75, 2007
                                                                                                                  4. Tsunami Generation and Propagation From the Mjølnir Asteroid Impact
                                                                                                                    S. Glimsdal, G. K. Pedersen, H. P. Langtangen, V. Shuvalov and H. Dypvik
                                                                                                                    Metheoritics & Planetary Science, vol. 42, pp. 1473—1493, 2007
                                                                                                                  5. Analysis of a 1D Incompressible Two-Fluid Model Including Artificial Diffusion
                                                                                                                    H. Holmås, T. Sira, M. Nordsveen, H. P. Langtangen and R. Shulkes
                                                                                                                    IMA Journal of Applied Mathematics, vol. 73, pp. 651—667, 2008
                                                                                                                  6. A Pseudospectral Fourier Method for a 1D Incompressible Two-Fluid Model
                                                                                                                    H. Holmås, D. Clamond and H. P. Langtangen
                                                                                                                    International Journal for Numerical Methods in Fluids, pp. 639—658, 2008
                                                                                                                  7. Unified Framework for Finite Element Assembly
                                                                                                                    M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
                                                                                                                    International Journal of Computational Science and Engineering, vol. 4, pp. 231—244, 2009
                                                                                                                  8. CSF Flow Dynamics at the Cranio-Vertebral Junction Studied With an Idealized Model of the Subarachnoid Space and Computational Flow Analysis
                                                                                                                    S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                    American Journal of Neuroradiology, vol. 31, pp. 185—192, 2009
                                                                                                                  9. Simplifying the Parallelization of Scientific Codes by a Function-Centric Approach in Python
                                                                                                                    J. K. Nilsen, X. Cai, B. Høyland and H. P. Langtangen
                                                                                                                    Computational Science & Discovery, vol. 3, pp. 015003, 2010, [DOI]
                                                                                                                  10. A Lumped Particle Modeling Framework for Simulating Particle Transport in Fluids
                                                                                                                    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                                                                                                                    Communications in Computational Physics, vol. 8, pp. 115—142, 2010
                                                                                                                  11. A FEniCS-Based Programming Framework for Modeling Turbulent Flow by the Reynolds-Averaged Navier-Stokes Equations
                                                                                                                    M. Mortensen, H. P. Langtangen and G. N. Wells
                                                                                                                    Advances in Water Resources, vol. 34, pp. 1082—1101, 2011, [DOI]
                                                                                                                  12. Effect of Tonsilar Herniation on Cyclic CSF Flow Studied With Computational Flow Analysis
                                                                                                                    S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland and H. P. Langtangen
                                                                                                                    American Journal of Neuroradiology, vol. 32, pp. 1474—1481, 2011
                                                                                                                  13. Particle Collisions in a Lumped Particle Model
                                                                                                                    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                                                                                                                    Communications in Computational Physics, vol. 10, pp. 823—843, 2011, [DOI]
                                                                                                                  14. CSF Flow in Chiari I and Syringomyelia From the Perspective of Computational Fluid Dynamics
                                                                                                                    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    The Neuroradiology Journal, vol. 24, pp. 20—23, 2011
                                                                                                                  15. Direct Numerical Simulation of Transitional Flow in a Patient-Specific Intracranial Aneurysm
                                                                                                                    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                    Journal of Biomechanics, vol. 44, pp. 2826—2832, 2011, [DOI]
                                                                                                                  16. Efficient Block Preconditioners for the Coupled Equations of Pressure and Deformation in Highly Discontinuous Media
                                                                                                                    J. B. Haga, H. Osnes and H. P. Langtangen
                                                                                                                    International Journal for Numerical and Analytical Methods in Geomechanics, vol. 35, pp. 1466—1482, 2011, [DOI]
                                                                                                                  17. Simulation of the Distortion Mechanisms Due to Non-Uniform Cooling in the Aluminum Extrusion Process
                                                                                                                    S. Bikass, B. Andersson, A. Pilipenko and H. P. Langtangen
                                                                                                                    International Journal of Thermal Sciences, vol. 52, pp. 50—58, 2012
                                                                                                                  18. Simulation of Initial Cooling Rate Effect on the Extrudate Distortion in the Aluminum Extrusion Process
                                                                                                                    S. Bikass, B. Andersson, A. Pilipenko and H. P. Langtangen
                                                                                                                    Applied Thermal Engineering, vol. 40, pp. 326—336, 2012
                                                                                                                  19. Computational Aspects of Multiscale Simulation With the Lumped Particle Framework
                                                                                                                    O. Al-Khayat and H. P. Langtangen
                                                                                                                    Communications in Computational Physics, vol. 12, pp. 1257—1274, 2012
                                                                                                                  20. Publishing Scientific Software Matters
                                                                                                                    C. Pradal, G. Varoquaux and H. P. Langtangen
                                                                                                                    Journal of Computational Science, vol. 4, pp. 311—312, 2013, [DOI]
                                                                                                                  21. Numerical Simulation of Water Resources Problems: Models, Methods, and Trends
                                                                                                                    C. T. Miller, C. N. Dawson, M. W. Farthing, T. Y. Hou, J. Huang, C. E. Kees, C. T. Kelley and H. P. Langtangen
                                                                                                                    Advances in Water Resources, vol. 51, pp. 405—437, 2013, [DOI]
                                                                                                                  22. Poro-elastic modeling of Syringomyelia – a systematic study of the effects of pia mater, central canal, median fissure, white and gray matter on pressure wave propagation and fluid movement within the cervical spinal cord
                                                                                                                    K.-H. Støverud, M. S. Alnæs, H. P. Langtangen, V. Haughton and K.-A. Mardal
                                                                                                                    Computer Methods in Biomechanics and Biomedical Engineering, vol. 19, pp. 686—698, 2015, [DOI]
                                                                                                                  23. Chaospy: An open source tool for designing methods of uncertainty quantification
                                                                                                                    J. Feinberg and H. P. Langtangen
                                                                                                                    Journal of Computational Science, vol. 11, pp. 46 — 57, 2015, [DOI]
                                                                                                                  24. Integrasjon av beregninger i fysikkundervisningen
                                                                                                                    A. Malthe-Sørenssen, M. Hjorth-Jensen, H. P. Langtangen and K. Mørken
                                                                                                                    Uniped, vol. 4, pp. 303 — 310, 2015
                                                                                                                  25. Stochastic sensitivity analysis for timing and amplitude of pressure waves in the arterial system
                                                                                                                    V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                                                    International Journal for Numerical Methods in Biomedical Engineering, vol. 31, 2015, [DOI]
                                                                                                                  26. High Performance Python for Direct Numerical Simulation of Turbulent Flows
                                                                                                                    M. Mortensen and H. P. Langtangen
                                                                                                                    Computer Physics Communications, vol. 203, pp. 53—65, 2016
                                                                                                                  27. Computational Investigation of Cerebrospinal Fluid Dynamics in the Posterior Cranial Fossa and Cervical Subarachnoid Space in Patients with Chiari I Malformation
                                                                                                                    K.-H. Støverud, H. P. Langtangen, G. A. Ringstad, P. K. Eide and K.-A. Mardal
                                                                                                                    PLOS ONE, 2016
                                                                                                                  28. Multivariate Polynomial Chaos Expansions with Dependent Variables
                                                                                                                    J. Feinberg, V. G. Eck and H. P. Langtangen
                                                                                                                    Accepted for publication in SIAM Journal on Scientific Computing, 2017

                                                                                                                  Books

                                                                                                                  1. Python Scripting for Computational Science
                                                                                                                    H. P. Langtangen
                                                                                                                    Springer, 2008
                                                                                                                  2. A Primer on Scientific Programming With Python
                                                                                                                    H. P. Langtangen
                                                                                                                    Springer, 2009
                                                                                                                  3. Elements of Scientific Computing
                                                                                                                    A. Tveito, H. P. Langtangen, B. F. Nielsen and X. Cai
                                                                                                                    Springer, 2010
                                                                                                                  4. A Primer on Scientific Programming With Python
                                                                                                                    H. P. Langtangen
                                                                                                                    Springer, 2011
                                                                                                                  5. A Primer on Scientific Programming With Python
                                                                                                                    H. P. Langtangen
                                                                                                                    Springer, 2012
                                                                                                                  6. A Primer on Scientific Programming with Python
                                                                                                                    H. P. Langtangen
                                                                                                                    Springer, 2014
                                                                                                                  7. A Primer on Scientific Programming with Python
                                                                                                                    H. P. Langtangen
                                                                                                                    Springer, 2016
                                                                                                                  8. Finite Difference Computing with Exponential Decay Models
                                                                                                                    H. P. Langtangen
                                                                                                                    Lecture Notes in Computer Science, Springer. Verlag, 2016
                                                                                                                  9. Scaling of Differential Equations
                                                                                                                    H. P. Langtangen and G. K. Pedersen
                                                                                                                    Springer International Publishing, 2016
                                                                                                                  10. Programming for Computations - A gentle Introduction to Numerical Simulations with MATLAB/Octave
                                                                                                                    S. Linge and H. P. Langtangen
                                                                                                                    Springer, 2016
                                                                                                                  11. Programming for Computations - A Gentle Introduction to Numerical Simulations with Python
                                                                                                                    S. Linge and H. P. Langtangen
                                                                                                                    Springer, 2016
                                                                                                                  12. Finite Difference Computing with PDEs
                                                                                                                    H. P. Langtangen
                                                                                                                    Springer, 2016

                                                                                                                  Chapters in Books

                                                                                                                  1. A Hybrid Approach to Efficient Finite Element Code Development
                                                                                                                    A. Logg, K.-A. Mardal, M. S. Alnæs, H. P. Langtangen and O. Skavhaug
                                                                                                                    in Petascale Computing - Algorithms and Applications, Edited by D. A. Bader, Chapman and Hall, 2007
                                                                                                                  2. Past and Future Perspectives on Scientific Software
                                                                                                                    A. Logg, H. P. Langtangen and X. Cai
                                                                                                                    in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 321—362, 2009
                                                                                                                  3. Scientific Computing: Why - How - What - What's Next
                                                                                                                    H. P. Langtangen and J. Sundnes
                                                                                                                    in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 237—248, 2009
                                                                                                                  4. The Mjølnir Tsunami
                                                                                                                    S. Glimsdal, G. Pedersen, H. P. Langtangen, V. Shuvalov and H. Dypvik
                                                                                                                    in The Mjølnir Impact Event and its Consequences, Edited by F. Tsikalas, H. Dypvik and M. Smelror, Springer, pp. 257—271, 2010
                                                                                                                  5. Parallel Computing Engines for Subsurface Imaging Technologies
                                                                                                                    J. T. C. Yeh, X. Cai, H. P. Langtangen, J. Zhu and C.-F. Ni
                                                                                                                    in Advanced Computational Infrastructures for Parallel and Distributed Adaptive Applications, Edited by M. Parashar and X. Li, Wiley, pp. 29—43, 2010
                                                                                                                  6. Simulation of Transitional Flows
                                                                                                                    M. Mortensen, K.-A. Mardal and H. P. Langtangen
                                                                                                                    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 419—438, 2012
                                                                                                                  7. A FEniCS Tutorial
                                                                                                                    H. P. Langtangen
                                                                                                                    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 1—70, 2012
                                                                                                                  8. Escaping the Zombie Threat by Mathematics
                                                                                                                    H. P. Langtangen, K.-A. Mardal and P. Røtnes
                                                                                                                    in Zombies in the Academy: Living Death in Higher Education, University of Chicago Press, 2013
                                                                                                                  9. Scientific Computing
                                                                                                                    H. P. Langtangen, U. Rüde and A. Tveito
                                                                                                                    in Encyclopedia of Applied and Computational Mathematics, Edited by B. Engquist, Springer-Verlag, pp. 1302—1310, 2015
                                                                                                                  10. Computational Partial Differential Equations
                                                                                                                    A. Tveito, H. P. Langtangen and R. Winther
                                                                                                                    in Encyclopedia of Applied and Computational Mathematics, Edited by B. Engquist, Springer-Verlag, pp. 271—278, 2015

                                                                                                                  Refereed Proceedings

                                                                                                                  1. Making Hybrid Tsunami Simulators in a Parallel Software Framework
                                                                                                                    X. Cai and H. P. Langtangen
                                                                                                                    in International Workshop on Applied Parallel Computing (PARA'06), 2007
                                                                                                                  2. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow and Heat Transfer in Sedimentary Basins
                                                                                                                    J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                                                                                                                    in MekIT'07. Fourth National Conference on Computational Mechanics, 2007
                                                                                                                  3. A Case Study in High-Performance Mixed-Language Programming
                                                                                                                    H. P. Langtangen
                                                                                                                    in Applied Parallel Computing - State of the Art in Scientific Computing (PARA'06), 2007
                                                                                                                  4. Lattice Boltzmann Method and Turbidity Flow Modeling
                                                                                                                    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                                                                                                                    in MekIT'07 : Fourth National Conference in Computational Mechanics, 2007
                                                                                                                  5. Benchmark of a Tsunami Run-Up Code
                                                                                                                    R. E. Bredesen, H. P. Langtangen and G. Pedersen
                                                                                                                    in MekIT'07. Fourth National Conference on Computational Mechanics, 2007
                                                                                                                  6. On the Efficiency of Python for High-Performance Computing: a Case Study Involving Stencil Updates for Partial Differential Equations
                                                                                                                    H. P. Langtangen and X. Cai
                                                                                                                    in Modeling, Simulation and Optimization of Complex Processes, 2008
                                                                                                                  7. How Do Scientists Develop and Use Scientific Software?
                                                                                                                    J. E. Hannay, H. P. Langtangen, C. MacLeod, D. Pfahl, J. Singer and G. Wilson
                                                                                                                    in Software Engineering for Computational Science and Engineering, 2009
                                                                                                                  8. Implementing a K-E Turbulence Model in the FEniCS Finite Element Programming Environment
                                                                                                                    K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
                                                                                                                    in MekIT'09.  Fifth  national  conference  on  Computational  Mechanics, 2009
                                                                                                                  9. Effect of Tonsilar Position on Cerebrospinal Fluid Flow in the Spinal Subarachnoid Space Studied With Computational Fluid Dynamics
                                                                                                                    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    in ASNR - 47th Annual Meeting of the American Society of Neuroradiology, 2009
                                                                                                                  10. On the Performance of an Algebraic Multigrid Preconditioner for the Pressure Equation With Highly Discontinuous Media
                                                                                                                    J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
                                                                                                                    in MekIT'09.  Fifth  national  conference  on  Computational  Mechanics, 2009
                                                                                                                  11. Using Cython to Speed Up Numerical Python Programs
                                                                                                                    I. Wilbers, H. P. Langtangen and Å. Ødegård
                                                                                                                    in MekIT´09.  Fifth  national  conference  on  Computational  Mechanics, 2009
                                                                                                                  12. On the Complexity of Stationary Flow in Patient-Specific Aneurysms
                                                                                                                    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                    in MekIT'11 Sixth national conference on Computational Mechanics, 2011
                                                                                                                  13. Investigations of Transistional Flows Using Image Based Hemodynamics
                                                                                                                    K. Valen-Sendstad, M. Mortensen, K.-A. Mardal, B. A. P. Reif and H. P. Langtangen
                                                                                                                    in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                                                  14. The Effect of Varying Cross-Sectional Areas on Cerebrospinal Fluid Flow and Pressure in the Cervical Spine
                                                                                                                    K.-H. Støverud, K.-A. Mardal, H. P. Langtangen and V. Haughton
                                                                                                                    in MekIT'11. Sixth national conference on Computational Mechanics, 2011
                                                                                                                  15. Cyclic Cerebrospinal Fluid Flow (I): Towards the Understanding of Cerebrospinal Fluid Flow Dynamics in Chiari I Malformation
                                                                                                                    S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland, H. P. Langtangen and K.-H. Støverud
                                                                                                                    in ASNR 49th Annual Meeting & the Foundation of the ASNR Symposium, June 4 - 9, 2011., 2011
                                                                                                                  16. CBC.RANS - a New Flexible, Programmable Software Framework for Computational Fluid Dynamics
                                                                                                                    M. Mortensen, H. P. Langtangen and J. Myhre
                                                                                                                    in Sixth national conference on Computational Mechanics (MekIT'11), 2011
                                                                                                                  17. Uncertainty Quantification of Diffusion in Layered Media by a New Method Based on Polynomial Chaos Expansion
                                                                                                                    J. Feinberg and H. P. Langtangen
                                                                                                                    in Seventh National Conference on Computational Mechanics MekIT'13, 2013
                                                                                                                  18. Effect of Oscillatory Cerebrospinal Fluid Pressure on Fluid Movement in the Spinal Cord
                                                                                                                    K.-H. Støverud, K.-A. Mardal and H. P. Langtangen
                                                                                                                    in Seventh National Conference on Computational Mechanics (MekIT'13), 2013
                                                                                                                  19. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                                                                                                    V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                                                                                    in 4th International Conference on Computational and Mathematical Biomedical Engineering (CMBE), Paris, June 29-July 3, 2015
                                                                                                                  20. Towards robust clinical assessment of arterial compliance
                                                                                                                    J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                                                    in 28th Nordic Seminar on Computational Mechanics, 2015
                                                                                                                  21. Uncertainty quantification and sensitivity analysis for wave propagation models of the arterial systemic circulation
                                                                                                                    V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                                                                                    in ICCB 2015, VI International Conference on Computational Bioengineering, Barcelona, 2015, 2015

                                                                                                                  Conference Proceedings

                                                                                                                  1. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                                                                    A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    in 21st Nordic Seminar on Computational Mechanics, 2008
                                                                                                                  2. CSF Flow in Chiari I and Syringomyelia - From the Perspective of Fluid Dynamics
                                                                                                                    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    in Proceedings of the XIX Symposium Neuroradiologicum, Bologna, Italy, 2010
                                                                                                                  3. Flexible Software Tools for Computational Turbulence
                                                                                                                    M. Mortensen and H. P. Langtangen
                                                                                                                    in Proceedings of the 25th Nordic Seminar on Computational Mechanics (NSCM-25), 2012
                                                                                                                  4. Stochastic arterial flow simulations
                                                                                                                    V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                                                    in Proceedings of the 27th Nordic Seminar on Computational Mechanics, 2014
                                                                                                                  5. Effects of parametric uncertainty in blood flow simulations
                                                                                                                    V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                                                    in Virtual Physiological Human Conference 2014, Trondheim, 2014

                                                                                                                  Technical Reports

                                                                                                                  1. PhD: Simulation of Deformation and Heat Flow in Sedimentary Basins
                                                                                                                    J. B. Haga, H. Osnes, H. P. Langtangen and A. M. Bruaset
                                                                                                                    Simula, 2007
                                                                                                                  2. Extrapolation From a Very Low Number of Computer Experiments
                                                                                                                    R. Lorentzen, Ø. Hjelle, H. P. Langtangen and A. M. Bruaset
                                                                                                                    Simula Research Laboratory, 2010

                                                                                                                  Manuals

                                                                                                                  1. UFC Specification and User Manual 1.0
                                                                                                                    M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
                                                                                                                    2007
                                                                                                                  2. Combining FEniCS With Your Favorite Software in C, C++, Fortran, Or MATLAB
                                                                                                                    K.-A. Mardal and H. P. Langtangen
                                                                                                                    2013

                                                                                                                  Talks

                                                                                                                  1. Benchmark of a Tsunami Run-Up Code
                                                                                                                    R. E. Bredesen, G. Pedersen and H. P. Langtangen
                                                                                                                    Talk at the MekIT'07: Fourth National Conference on Computational Mechanics, Trondheim, Norway, 2007
                                                                                                                  2. On a Future Software Platform for Demanding Multi-Scale and Multi-Physics Problems
                                                                                                                    X. Cai and H. P. Langtangen
                                                                                                                    Talk at SIAM CSE07 Conference, Costa Mesa, CA, Feb. 19-23, 2007
                                                                                                                  3. Computational Modeling of Huge Tsunamis From Asteroid Impacts
                                                                                                                    H. P. Langtangen
                                                                                                                    Invited keynote lecture at the International conference on Computational Science 2007 (ICCS'07), Beijing, China, 2007
                                                                                                                  4. Optimal Coupling in a Multiscale Model
                                                                                                                    H. Enger, J. Feder, A. Malthe-Sørenssen and H. P. Langtangen
                                                                                                                    Poster at the Kongsberg Seminar on geology, Kongsberg, Norway, 2007
                                                                                                                  5. A Pseudospectral Fourier Method Applied to an Incompressible Two-Fluid Model
                                                                                                                    H. Holmås, D. Clamond and H. P. Langtangen
                                                                                                                    Talk at the International Conference on Multiphase Flow, ICMF 2007, Leipzig, Germany, 2007
                                                                                                                  6. Lattice Boltzmann Method and Turbidity Flow Modeling
                                                                                                                    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                                                                                                                    Talk at MekIT'07: Fourth National Conference on Computational Mechanics, 2007
                                                                                                                  7. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow, and Heat Transport in Porous Geological Formations
                                                                                                                    J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                                                                                                                    Talk at the Fourth National Conference on Computational Mechanics (MekIT'07), Trondheim, Norway, 2007
                                                                                                                  8. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                                                                    A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    Invited talk at the 21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
                                                                                                                  9. Particle-Based Methods in the Modelling of Turbidity Currents and Turbidites
                                                                                                                    O. Al-Khayat, T. M. Løseth, A. M. Bruaset and H. P. Langtangen
                                                                                                                    Talk at the 33rd IGC Congress in Oslo, 2008
                                                                                                                  10. Numerical Modeling of Turbidity Flow With the Lattice Boltzmann Method
                                                                                                                    O. Al-Khayat, A. M. Bruaset and H. P. Langtangen
                                                                                                                    Talk at the Computational Geoscience workshop, 2008
                                                                                                                  11. A Coupled Lattice Boltzmann Model for a Turbulent Sand-Laden Fluid Flow
                                                                                                                    O. Al-Khayat, H. P. Langtangen and A. M. Bruaset
                                                                                                                    Talk at the DSFD conference in Brazil, 2008
                                                                                                                  12. Numerical Python
                                                                                                                    H. P. Langtangen, O. Al-Khayat and A. M. Bruaset
                                                                                                                    Four day course at the University of Erlangen, 2008
                                                                                                                  13. Chiari Malformation - the Problem and a Mathematical Approach
                                                                                                                    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    Invited talk, Vindern Medical Center, 8th of December, Oslo, Norway, 2008
                                                                                                                  14. Cerebrospinal Fluid Flow in Normal and Chiari Subjects
                                                                                                                    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    talk, Seminar at CBC (Simula Research Laboratory), 16th of December, Oslo, Norway, 2008
                                                                                                                  15. Cerebrospinal Fluid Flow Simulations - Normal Subjects and Patients With Chiari I Malformation
                                                                                                                    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    talk, Seminar at CBC (Simula Research Laboratory), 31st of October, Oslo, Norway), 2008
                                                                                                                  16. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
                                                                                                                    S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                    talk, Seminar at CBC (Simula Research Laboratory), 25th of June, Oslo, Norway., 2008
                                                                                                                  17. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
                                                                                                                    S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                    talk, Seminar at CBC (Simula Research Laboratory), 20th of May, Oslo, Norway., 2008
                                                                                                                  18. Experience With Merging Mathematics, Numerical Methods, Physics and Programming From Day 1
                                                                                                                    H. P. Langtangen
                                                                                                                    Invited talk at Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
                                                                                                                  19. Python for Scientific Computing at SIAM CSE 2009
                                                                                                                    F. Perez, H. P. Langtangen and R. LeVeque
                                                                                                                    Article in the SIAM News magazine, 2009
                                                                                                                  20. Techniques for Achieving High Performance in Numerical Python Codes
                                                                                                                    H. P. Langtangen
                                                                                                                    Invited talk at Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
                                                                                                                  21. Experience With Python in a Major Educational Reform
                                                                                                                    H. P. Langtangen
                                                                                                                    Minisymposium talk at the SIAM Conference on Computational Science and Engineering, Miami, USA, 2009
                                                                                                                  22. Modeling and Simulation
                                                                                                                    H. P. Langtangen
                                                                                                                    Invited talk at a Tekna Labor Union seminar, 2009
                                                                                                                  23. Patient-Specific Simulations of Stroke and Syringomyelia
                                                                                                                    K.-A. Mardal, S. Hentschel, A. Helgeland, H. P. Langtangen, S. Linge, A. E. Løvgren, A. Logg and K. Valen-Sendstad
                                                                                                                    Talk : Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, Nov 03, 2009
                                                                                                                  24. CSF Flow Modelling
                                                                                                                    K.-A. Mardal, V. Haughton, S. Hentschel, H. P. Langtangen, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                                                    Invited talk at CSR Flow Research Conference at University of Wisconsin, Nov 9, 2009
                                                                                                                  25. Python As an Important Tool in a Major Science Education Reform
                                                                                                                    H. P. Langtangen
                                                                                                                    Invited talk at Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009
                                                                                                                  26. Cerebrospinal Fluid Flow Investigations With Modelling and Simulation
                                                                                                                    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    invited talk at The Chiari Institute, 14th of January, New York, U.S.A., 2009
                                                                                                                  27. Simulating Normal and Abnormal CSF Flow With Idealized Geometries
                                                                                                                    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    talk, seminar on cerebrospinal fluid flow, 16th of January, University of Wisconsin, U.S.A., 2009
                                                                                                                  28. Implementing a K-E Turbulence Model in the FEniCS Finite Element Programming Environment
                                                                                                                    K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
                                                                                                                    Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                  29. Tonsilar Herniation - How Is the CSF Flow Influenced?
                                                                                                                    S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    Invited talk at Rikshospitalet University Hospital, Oslo, Norway, 5th of June, 2009
                                                                                                                  30. Some Biomedical Applications at Simula
                                                                                                                    K.-A. Mardal, A. Helgeland, S. Hentschel, H. P. Langtangen, A. Logg, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                                                    Talk at the CBC Workshop on Computational Biology with UMB, 2009
                                                                                                                  31. On the Perfermance of an Algebraic Multigrid Preconditioner for the Pressure Equationwith Highly Discontinuous Media
                                                                                                                    J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
                                                                                                                    Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                  32. Using Cython to Speed Up Numerical Python Programs
                                                                                                                    I. Wilbers, H. P. Langtangen and Å. Ødegård
                                                                                                                    Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                  33. Cerebrospinal Fluid (CSF) - Oscillating Flow and Pressure
                                                                                                                    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
                                                                                                                  34. CSF Hydrodynamic in Patients With Syringomyelia and Chiari I Malformations
                                                                                                                    K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                    Annual NUPUS meeting in Freudenstadt, 2010
                                                                                                                  35. From a Physical Problem to Computer Simulations
                                                                                                                    K.-H. Støverud, K.-A. Mardal and H. P. Langtangen
                                                                                                                    CBC Workshop on Cerebrospinal Fluid Flow in the Brain and Spinal Canal - Clinical, Experimental and Mathematical Models and Problems, Simula, May 28, 2010
                                                                                                                  36. Computational Modeling of Huge Tsunamis From Asteroid Impacts
                                                                                                                    H. P. Langtangen
                                                                                                                    Computational Geoscience seminar, 2010
                                                                                                                  37. Cerebrospinal Fluid Flow in the Upper Cervical Canal in Patients With the Chiari I Malformation
                                                                                                                    K.-A. Mardal, K.-H. Støverud, V. Haughton, S. Linge, H. P. Langtangen, G. Rutkowska and I. N. Drøsdal
                                                                                                                    1ST CSF Hydrodynamics Symposium, 2011
                                                                                                                  38. The Finite Element Library FEniCS and Simulation of Blood Flow in Cerebral Aneurysms
                                                                                                                    K.-A. Mardal, K. Valen-Sendstad, M. S. Alnæs, M. Mortensen, H. P. Langtangen and B. A. P. Reif
                                                                                                                    Talk at CSB Seminar, University of Stuttgart, 2011
                                                                                                                  39. Computational Cerebral Hemodynamics
                                                                                                                    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                    The Norwegian Defence Research Establishment, 2011
                                                                                                                  40. Simulation Methodology for Cerebral Blood Flow
                                                                                                                    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                    Biomedical Simulation Lab, Institute of Biomaterials and Biomedical Engineering at the University of Toronto, 2011
                                                                                                                  41. Direct Numerical Simulation of Transitional Flow in Patient-Specific Intracranial Aneurysms
                                                                                                                    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                    ASME 2011 Summer Bioengineering Conference, 2011
                                                                                                                  42. Abnormal Flows in the Brain and the Spine: How to Better Understand Diseases by Computations
                                                                                                                    H. P. Langtangen
                                                                                                                    Talk at the Computational Life Science seminar, University of Oslo, 2011
                                                                                                                  43. Kaos I Hjernen - Ny Innsikt Gjennom Simuleringer
                                                                                                                    H. P. Langtangen
                                                                                                                    University of Oslo 1-day seminar: Realister invaderer helsevesenet, 2011
                                                                                                                  44. Kaos I Hjernen - Ny Innsikt Gjennom Simuleringer
                                                                                                                    H. P. Langtangen
                                                                                                                    Talk at Fysikkforeningen, 2011
                                                                                                                  45. 'Turbulence' in Cerebral Aneurysms
                                                                                                                    K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, H. P. Langtangen, B. A. P. Reif and D. A. Steinman
                                                                                                                    CBC Workshop on Biomechanics, 17-18 November, 2011
                                                                                                                  46. Will FEniCS Fly?
                                                                                                                    K.-A. Mardal and H. P. Langtangen
                                                                                                                    FEniCS 12 workshop, 2012
                                                                                                                  47. CSF Flow Dynamics: Effects of Viscosity and Inertia
                                                                                                                    K.-H. Støverud, V. Haughton, H. P. Langtangen and K.-A. Mardal
                                                                                                                    ANSR 2012, New York, 2012
                                                                                                                  48. Are Zombies a Threat to Mankind?
                                                                                                                    K.-A. Mardal, H. P. Langtangen and P. Røtnes
                                                                                                                    Invited talk for the opening of RF kjelleren at the University of Oslo, 2012
                                                                                                                  49. Flexible Specification of Large Systems of Nonlinear PDEs
                                                                                                                    H. P. Langtangen and M. Mortensen
                                                                                                                    Keynote talk at the 2nd HPC^3 Workshop on High-Performance Computing, KAUST, Saudi-Arabia, 2012
                                                                                                                  50. Bringing Flow Simulations to the Clinic
                                                                                                                    H. P. Langtangen
                                                                                                                    Invited lecture at the Scientific Computing and Imaging Institute (SCI Institute), University of Utah, USA, 2013
                                                                                                                  51. Building Simulation Software for the Next Decade: Tools and Trends
                                                                                                                    H. P. Langtangen
                                                                                                                    International Workshop on Mantle and Litosphere Dynamics, Klækken hotel, Norway, 2013
                                                                                                                  52. Er Zombier En Trussel Mot Menneskeheten?
                                                                                                                    K.-A. Mardal, T. Seland, H. P. Langtangen and P. Røtnes
                                                                                                                    Upop aften - Det norske student samfund, 2014
                                                                                                                  53. How to Easily Implement Sophisticated Tailored Algorithms in Computational Turbulence
                                                                                                                    H. P. Langtangen
                                                                                                                    Department of Mathematics, University of Oxford, UK, 2014
                                                                                                                  54. Code Generation for High-Level Problem Specification and HPC
                                                                                                                    H. P. Langtangen
                                                                                                                    London University College, London, UK, 2014
                                                                                                                  55. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                                                                                                    V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                                                                                    4th International Conference on Computational and Mathematical Biomedical Engineering, France, 2015
                                                                                                                  56. Towards robust clinical assessment of arterial compliance
                                                                                                                    J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                                                    28th Nordic Seminar on Computational Mechanics, 2015

                                                                                                                  Mats G. Larson

                                                                                                                    Articles in International Journals

                                                                                                                    1. Vorticity-strain Residual-Based Turbulence Modelling of the Taylor-Green Vortex
                                                                                                                      R. E. Bensow, M. G. Larson and P. Westerlund
                                                                                                                      International Journal for Numerical Methods in Fluids, vol. 54, pp. 745—756, 2007, [DOI]
                                                                                                                    2. Adaptive Finite Element Approximation of Multiphysics Problems
                                                                                                                      M. G. Larson and F. Bengzon
                                                                                                                      Communications in Numerical Methods in Engineering, vol. 24, pp. 505—521, 2007, [DOI]
                                                                                                                    3. A Posteriori Error Estimates for Mixed Finite Element Approximations of Elliptic Problems
                                                                                                                      M. G. Larson and A. Målqvist
                                                                                                                      Numerische Mathematik, vol. 108, pp. 487—500, 2008
                                                                                                                    4. Adaptive Finite Element Approximation of Multiphysics Problems: a Fluid-Structure Interaction Model Problem
                                                                                                                      F. Bengzon and M. G. Larson
                                                                                                                      International Journal for Numerical Methods in Engineering, vol. 84, pp. 1451—1465, 2010
                                                                                                                    5. Blockwise Adaptivity for Time Dependent Problems Based on Coarse Scale Adjoint Solutions
                                                                                                                      V. Carey, D. Estep, A. Johansson, M. G. Larson and S. Tavener
                                                                                                                      SIAM Journal on Scientific Computing, vol. 32, pp. 2121—2145, 2010
                                                                                                                    6. Convergence Analysis of Finite Element Method Approximations of Joule Heating Problem in Three Spatial Dimensions
                                                                                                                      M. J. Holst, M. G. Larson and A. Målquist
                                                                                                                      BIT Numerical Mathematics, vol. 50, pp. 781—795, 2010, [DOI]
                                                                                                                    7. Residual Based VMS Subgrid Modeling for Vortex Flows
                                                                                                                      R. E. Bensow and M. G. Larson
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 199, pp. 802—809, 2010
                                                                                                                    8. An Adaptive Finite Element Method for Second-Order Plate Theory
                                                                                                                      P. Hansbo, D. Heintz and M. G. Larson
                                                                                                                      International Journal for Numerical Methods in Engineering, vol. 81, pp. 584—603, 2010
                                                                                                                    9. A Posteriori Error Estimates for Continuous/discontinuous Galerkin Approximations of the Kirchhoff-Love Plate
                                                                                                                      P. Hansbo and M. G. Larson
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 3289—3295, 2011
                                                                                                                    10. Adaptive Component Mode Synthesis in Linear Elasticity
                                                                                                                      H. Jakobsson, F. Bengzon and M. G. Larson
                                                                                                                      International Journal for Numerical Methods in Engineering, vol. 86, pp. 829—844, 2011
                                                                                                                    11. A Finite Element Method With Discontinuous Rotations for the Mindlin-Reissner Plate Model
                                                                                                                      P. Hansbo, D. Hentza and M. G. Larson
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 638—648, 2011
                                                                                                                    12. Energy Norm a Posteriori Error Estimates for Discontinuous Galerkin Approximations of the Linear Elasticity Problem
                                                                                                                      P. Hansbo and M. G. Larson
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 3026—3030, 2011
                                                                                                                    13. A Posteriori Error Analysis of Component Mode Synthesis for the Elliptic Eigenvalue Problem
                                                                                                                      H. Jakobsson and M. G. Larson
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 200, pp. 2840—2847, 2011
                                                                                                                    14. A Posteriori Error Estimates for Mixed Finite Element Approximations of Parabolic Problems
                                                                                                                      M. G. Larson and A. Målquist
                                                                                                                      Numerische Mathematik, vol. 118, pp. 33—48, 2011
                                                                                                                    15. An Adaptive Finite Element Splitting Method for the Incompressible Navier-Stokes Equations
                                                                                                                      K. Selim, A. Logg and M. G. Larson
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 209-212, pp. 54—65, 2012, [DOI]
                                                                                                                    16. Mode Superposition With Submodeling
                                                                                                                      H. Jakobsson and M. G. Larson
                                                                                                                      International Journal for Numerical Methods in Engineering, vol. 90, pp. 739—751, 2012
                                                                                                                    17. Continuous Piecewise Linear Finite Elements for the Kirchhoff-Love Plate Equation
                                                                                                                      K. Larsson and M. G. Larson
                                                                                                                      Numerische Mathematik, vol. 121, pp. 65—97, 2012
                                                                                                                    18. Efficient Implementation of Finite Element Methods on Nonmatching and Overlapping Meshes in Three Dimensions
                                                                                                                      A. Massing, M. G. Larson and A. Logg
                                                                                                                      SIAM Journal on Scientific Computing, vol. 35, pp. C23—C47, 2013, [DOI]
                                                                                                                    19. A High Order Discontinuous Galerkin Nitsche Method With Fictitous Boundary
                                                                                                                      A. Johansson and M. G. Larson
                                                                                                                      Numerische Mathematik, vol. 123, pp. 607—628, 2013, [DOI]
                                                                                                                    20. CutFEM: Discretizing Geometry and Partial Differential Equations
                                                                                                                      E. Burman, S. Claus, P. Hansbo, M. G. Larson and A. Massing
                                                                                                                      International Journal of Numerical Methods in Engineering, vol. 104, pp. 472—501, 2014
                                                                                                                    21. A Stabilized Nitsche Fictitious Domain Method for the Stokes Problem
                                                                                                                      A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                      Journal of Scientific Computing, vol. 61, pp. 604—628, 2014, [DOI]
                                                                                                                    22. Locking Free Quadrilateral Continuous/discontinuous Finite Element Methods for the Reissner-Mindlin Plate
                                                                                                                      P. Hansbo and M. G. Larson
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 269, pp. 381—393, 2014, [DOI]
                                                                                                                    23. A Stabilized Nitsche Overlapping Mesh Method for the Stokes Problem
                                                                                                                      A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                      Numerische Mathematik, vol. 128, pp. 73—101, 2014, [DOI]
                                                                                                                    24. Variational formulation of curved beams in global coordinates
                                                                                                                      P. Hansbo, M. G. Larson and K. Larsson
                                                                                                                      Computational Mechanics, vol. 53, pp. 611—623, 2014, [DOI]
                                                                                                                    25. Finite element modeling of a linear membrane shell problem using tangential differential calculus
                                                                                                                      P. Hansbo and M. G. Larson
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 270, pp. 1 — 14, 2014, [DOI]
                                                                                                                    26. A cut finite element method for a Stokes interface problem
                                                                                                                      P. Hansbo, M. G. Larson and S. Zahedi
                                                                                                                      Applied Numerical Mathematics, vol. 85, pp. 90 — 114, 2014, [DOI]
                                                                                                                    27. Adaptive Finite Element Solution of Multiscale PDE-ODE Systems
                                                                                                                      A. Johansson, J. Chaudhry, V. Carey, D. Estep, V. Ginting, M. G. Larson and S. Tavener
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 287, pp. 150—171, 2015
                                                                                                                    28. A Nitsche-based Cut Finite Element Method for a Fluid-Structure Interaction Problem
                                                                                                                      A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                      Communications in Applied Mathematics and Computational Science, vol. 10, pp. 97—120, 2015, [DOI]
                                                                                                                    29. Tangential differential calculus and the finite element modeling of a large deformation elastic membrane problem
                                                                                                                      P. Hansbo, M. G. Larson and F. Larsson
                                                                                                                      Computational Mechanics, vol. 56, pp. 87—95, 2015, [DOI]
                                                                                                                    30. Minimal surface computation using a finite element method on an embedded surface
                                                                                                                      P. Hansbo, M. Cenanovic and M. G. Larson
                                                                                                                      International Journal for Numerical Methods in Engineering, vol. 104, pp. 502—512, 2015, [DOI]
                                                                                                                    31. High order cut finite element methods for the Stokes problem
                                                                                                                      A. Johansson, M. G. Larson and A. Logg
                                                                                                                      Advanced Modeling and Simulation in Engineering Sciences, vol. 2, 2015, [DOI]
                                                                                                                    32. Stabilized Finite Element Approximation of the Mean Curvature Vector on Closed Surfaces
                                                                                                                      P. Hansbo, M. G. Larson and S. Zahedi
                                                                                                                      SIAM Journal on Numerical Analysis, vol. 53, pp. 1806—1832, 2015, [DOI]
                                                                                                                    33. A stabilized cut finite element method for partial differential equations on surfaces: The Laplace-Beltrami operator
                                                                                                                      E. Burman, P. Hansbo and M. G. Larson
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 285, pp. 188—207, 2015, [DOI]
                                                                                                                    34. A posteriori error estimates for continuous/discontinuous Galerkin approximations of the Kirchhoff-Love buckling problem
                                                                                                                      P. Hansbo and M. G. Larson
                                                                                                                      Computational Mechanics, vol. 56, pp. 815—827, 2015, [DOI]
                                                                                                                    35. Characteristic cut finite element methods for convection - diffusion problems on time dependent surfaces
                                                                                                                      P. Hansbo, M. G. Larson and S. Zahedi
                                                                                                                      Computer Methods in Applied Mechanics and Engineering, vol. 293, pp. 431—461, 2015, [DOI]
                                                                                                                    36. Cut Finite Element Methods on Coupled Bulk-Surface Problems
                                                                                                                      E. Burman, P. Hansbo, M. G. Larson and S. Zahedi
                                                                                                                      Numerische Mathematik, vol. 133, pp. 203—231, 2015, [DOI]
                                                                                                                    37. A cut discontinuous Galerkin method for the Laplace–Beltrami operator
                                                                                                                      E. Burman, P. Hansbo, M. G. Larson and A. Massing
                                                                                                                      IMA Journal of Numerical Analysis, vol. 37, pp. 138—169, 2016, [DOI]

                                                                                                                    Books

                                                                                                                    1. The Finite Element Method: Theory, Implementation, and Applications
                                                                                                                      M. G. Larson and F. Bengzon
                                                                                                                      Springer, 2013

                                                                                                                    Chapters in Books

                                                                                                                    1. Error Estimation and Adaptivity
                                                                                                                      M. G. Larson and F. Bengzon
                                                                                                                      in Encyclopedia of applied and computational mathematics, Edited by B. Engquist, Springer, 2012

                                                                                                                    Refereed Proceedings

                                                                                                                    1. Towards an Implementation of Nitsche's Method on Overlapping Meshes in 3D
                                                                                                                      A. Massing, M. G. Larson and A. Logg
                                                                                                                      in AIP Conference Proceedings (ICNAAM 2010), 2010
                                                                                                                    2. Model Reduction for Thermoelasticity
                                                                                                                      M. G. Larson, H. Jakobsson and H. Jakobsson
                                                                                                                      in Proceedings of the 8th international conference on engineering computation, 2012
                                                                                                                    3. Component Modal Synthesis for Laminar Viscous Incompressible Fluid Flow
                                                                                                                      M. G. Larson and F. Bengzon
                                                                                                                      in Proceedings of the 8th International Conference on Scientific Computing and Applications, 2012
                                                                                                                    4. Component Mode Synthesis for Laminar Viscous Incompressible Fluid Flow
                                                                                                                      M. G. Larson and F. Bengzon
                                                                                                                      in Recent Advances in Scientific Computing and Applications, 2013

                                                                                                                    Talks

                                                                                                                    1. Multiscale Modeling of Turbulent Flow
                                                                                                                      M. G. Larson
                                                                                                                      Talk at CBC Workshop on Biomedical Computing, 2007
                                                                                                                    2. Adaptivity and Error Estimation for Multiphysics Problems
                                                                                                                      M. G. Larson
                                                                                                                      Talk at CBC Workshop on Biomedical Computing, 2007
                                                                                                                    3. Can Inverse Problems Tell You the Condition of Your Heart?
                                                                                                                      B. F. Nielsen, O. M. Lysaker and M. G. Larson
                                                                                                                      Zurich Intelligencer; International Congress on Industrial and Applied Mathematics (ICIAM), Springer-Verlag, 2007
                                                                                                                    4. Cut Finite Element Methods for Multi-Physics Problems (in FEniCS!)
                                                                                                                      E. Burman, S. Claus, P. Hansbo, M. G. Larson and A. Massing
                                                                                                                      18th European Conference on Mathematics for Industry, 2014
                                                                                                                    5. A High Order DG Cut Finite Element Method for Elliptic Problems
                                                                                                                      A. Johansson and M. G. Larson
                                                                                                                      Simula Research Laboratory, 2014
                                                                                                                    6. High order methods on arbitrarily many intersecting meshes: Multimesh
                                                                                                                      A. Johansson, B. Kehlet, M. G. Larson and A. Logg
                                                                                                                      FEF 2017, Rome, 2017
                                                                                                                    7. FEM on arbitrarily many intersecting meshes: Multimesh
                                                                                                                      A. Johansson, B. Kehlet, M. G. Larson and A. Logg
                                                                                                                      European Finite element fair, 2017, Milano, 2017

                                                                                                                    Paul Roger Leinan

                                                                                                                      Articles in International Journals

                                                                                                                      1. Human Ductus Venosus Velocity Profiles in the First Trimester
                                                                                                                        P. R. Leinan, T. Kiserud and L. R. Hellevik
                                                                                                                        Cardiovascular Engineering and Technology, vol. 4, pp. 257—266, 2013, [DOI]

                                                                                                                      Refereed Proceedings

                                                                                                                      1. On Material Modelling of Umbilical Vein
                                                                                                                        P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
                                                                                                                        in Fifth National Conference on Computational Mechanics (MekIT´09), 2009
                                                                                                                      2. Initial Study on Material Modeling of Umbilical Veins in Fetal Sheep
                                                                                                                        P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
                                                                                                                        in 6th World Congress of Biomechanics, 2010
                                                                                                                      3. A Biomechanical Model for Human Umbilical Veins and Wharton's Jelly
                                                                                                                        P. R. Leinan, V. E. Prot, C. N. van den Broek, T. Kiserud, B. H. Skallerud, L. R. Hellevik and F. N. van de Vosse
                                                                                                                        in 8th International Conference on Computational Fluid Dynamics in the Oil & Gas, Metallurgical and Process Industries, 2011

                                                                                                                      Theses

                                                                                                                      1. Biomechanical Modeling of Fetal Veins. the Umbilical Vein and Ductus Venosus Bifurcation
                                                                                                                        P. R. Leinan
                                                                                                                        Ph.D. Thesis, Norwegian University of Science and Technology, 2012

                                                                                                                      Talks

                                                                                                                      1. Simulations and Experiments With the BSCC Mechanical Heart Valve Prosthesis
                                                                                                                        P. R. Leinan
                                                                                                                        Talk at CBC Workshop on Biomechanics, Trondheim, 2007
                                                                                                                      2. Fluid Structure Interaction Modeling of Pulsations of the Fetal Umbilical Cord
                                                                                                                        P. R. Leinan
                                                                                                                        Talk at the 8th Workd Congress on Computational Mechanics, 2008

                                                                                                                      Pan Li

                                                                                                                        Articles in International Journals

                                                                                                                        1. Three-Dimensional High-Resolution Imaging of Cardiac Proteins to Construct Models of Intracellular Ca2+ Signalling
                                                                                                                          C. Soeller, I. Jayasinghe, P. Li, A. Holden and M. Cannell
                                                                                                                          Experimental Physiology, vol. 94, pp. 496—508, 2009, [DOI]
                                                                                                                        2. Intracellular Ca2+ Nonlinear Wave Behaviours in a Three Dimensional Ventricular Cell Model
                                                                                                                          P. Li and A. Holden
                                                                                                                          Physica D: Nonlinear Phenomena, vol. 238, pp. 992—999, 2009, [DOI]
                                                                                                                        3. Computational Modeling of the Initiation and Development of Spontaneous Intracellular Ca2+ Waves in Ventricular Myocytes
                                                                                                                          P. Li, W. Wei, X. Cai, C. Soeller, M. Cannell and A. V. Holden
                                                                                                                          Philosophical Transactions of the Royal Society A, vol. 368, pp. 3953—3965, 2010, [DOI]
                                                                                                                        4. On Defining Candidate Drug Characteristics for Long-QT
                                                                                                                          A. Tveito, G. T. Lines, P. Li and A. D. McCulloch
                                                                                                                          Mathematical Biosciences and Engineering, vol. 8, pp. 861—873, 2011
                                                                                                                        5. Mathematical Models of Cardiac Pacemaking Function
                                                                                                                          P. Li, G. T. Lines, M. Maleckar and A. Tveito
                                                                                                                          Frontiers in Physics, vol. 1, 2013, [DOI]
                                                                                                                        6. Non-equilibrium reactivation of Na+ current drives early afterdepolarizations in mouse ventricle
                                                                                                                          A. Edwards, E. Grandi, J. E. Hake, S. Patel, P. Li, S. Miyamoto, J. H. Omens, J. H. Brown, D. M. Bers and A. D. McCulloch
                                                                                                                          Circulation: Arrhythmia and Electrophysiology, vol. 7, pp. 1205—1213, 2014

                                                                                                                        Refereed Proceedings

                                                                                                                        1. Evolution of Intracellular Ca2+ Waves From About 10,000 RyR Clusters: Towards Solving a Computationally Daunting Task
                                                                                                                          P. Li, W. Wei, X. Cai, C. Soeller, M. Cannell and A. V. Holden
                                                                                                                          in The Fifth International Conference on Functional Imaging and Modeling of the Heart, 2009

                                                                                                                        Talks

                                                                                                                        1. Antiarrhythmic Drug Identifaction
                                                                                                                          G. T. Lines, A. Tveito and P. Li
                                                                                                                          Presented at the Bidomain Workshop, Graz, Austria, 2009

                                                                                                                        Glenn Terje Lines

                                                                                                                          Articles in International Journals

                                                                                                                          1. On the Accuracy of Operator Splitting As Applied to Discretized Reaction Diffusion Systems
                                                                                                                            A. Schroll, G. T. Lines and A. Tveito
                                                                                                                            International Journal of Computer Mathematics, vol. 84, pp. 871—885, 2007
                                                                                                                          2. Optimal Monodomain Approximations of the Bidomain Equations
                                                                                                                            B. F. Nielsen, T. S. Ruud, G. T. Lines and A. Tveito
                                                                                                                            Applied Mathematics and Computation, vol. 184, pp. 276—290, 2007
                                                                                                                          3. Using Python to Solve Partial Differential Equations
                                                                                                                            K.-A. Mardal, O. Skavhaug, G. T. Lines, G. A. Staff and Å. Ødegård
                                                                                                                            Computing in Science & Engineering, vol. 9, pp. 48—51, 2007
                                                                                                                          4. On the Frequency of Automaticity During Ischemia in Simulations Based on Stochastic Perturbations of the Luo-Rudy 1 Model
                                                                                                                            S. Linge, G. T. Lines, J. Sundnes and A. Tveito
                                                                                                                            Computers in Biology and Medicine, vol. 38, pp. 1218—1227, 2008
                                                                                                                          5. A Condition for Setting Off Ectopic Waves in Computational Models of Excitable Cells
                                                                                                                            A. Tveito and G. T. Lines
                                                                                                                            Mathematical Biosciences, vol. 213, pp. 141—150, 2008, [DOI]
                                                                                                                          6. Stochastic Binding of Ca2+ in the Dyadic Cleft: Continuous Vs. Random-Walk Description of Diffusion.
                                                                                                                            J. E. Hake and G. T. Lines
                                                                                                                            Biophysical Journal, vol. 94, pp. 4184—4201, 2008, [DOI]
                                                                                                                          7. Synchronizing Computer Simulations With Measurement Data for a Case of Atrial Flutter
                                                                                                                            G. T. Lines, S. Linge, M. C. MacLachlan and A. Tveito
                                                                                                                            Annals of Biomedical Engineering, vol. 37, pp. 1287—1293, 2009
                                                                                                                          8. Adaptive Finite Element Simulation of Ventricular Fibrillation Dynamics
                                                                                                                            P. Deuflhard, B. Erdmann, R. Roitzsch and G. T. Lines
                                                                                                                            Computing and Visualization in Science, vol. 12, pp. 201—205, 2009
                                                                                                                          9. A Note on a Method for Determining Advantageous Properties of an Anti-Arrhythmic Drug Based on a Mathematical Model of Cardiac Cells
                                                                                                                            A. Tveito and G. T. Lines
                                                                                                                            Mathematical Biosciences, vol. 217, pp. 167—173, 2009, [DOI]
                                                                                                                          10. Numerical Solution of the Bidomain Equations
                                                                                                                            S. Linge, J. Sundnes, M. Hanslien, G. T. Lines and A. Tveito
                                                                                                                            Philosophical Transactions of the Royal Society A, vol. 367, pp. 1931—1951, 2009
                                                                                                                          11. Control of Ca2+ Release by Action Potential Configuration in Normal and Failing Murine Cardiomyocytes
                                                                                                                            W. E. Louch, J. E. Hake, G. F. Jølle, H. K. Mørk, I. Sjaastad, G. T. Lines and O. M. Sejersted
                                                                                                                            Biophysical Journal, vol. 99, pp. 1377—1386, 2010
                                                                                                                          12. A Method for Analyzing the Stability of the Resting State for a Model of Pacemaker Cells Surrounded by Stable Cells
                                                                                                                            R. Artebrant, A. Tveito and G. T. Lines
                                                                                                                            Mathematical Biosciences and Engineering, vol. 7, pp. 505—526, 2010
                                                                                                                          13. Existence of Excitation Waves for a Collection of Cardiomyocytes Electrically Coupled to Fibroblasts
                                                                                                                            A. Tveito, G. T. Lines, R. Artebrant, O. Skavhaug and M. Maleckar
                                                                                                                            Mathematical Biosciences, vol. 230, pp. 79—86, 2011, [DOI]
                                                                                                                          14. Unstable Eigenmodes As Possible Drivers for Cardiac Arrhythmias
                                                                                                                            A. Tveito, G. T. Lines, O. Skavhaug and M. Maleckar
                                                                                                                            Journal of the Royal Society Interface, vol. 8, pp. 1212—6, 2011
                                                                                                                          15. Computing the Stability of Steady-State Solutions of Mathematical Models of the Electrical Activity in the Heart
                                                                                                                            A. Tveito, O. Skavhaug, G. T. Lines and R. Artebrant
                                                                                                                            Mathematical Biosciences and Engineering, vol. 41, pp. 611—618, 2011, [DOI]
                                                                                                                          16. Stability of Two Time-Integrators for the Aliev-Panfilov System
                                                                                                                            M. Hanslien, R. Artebrant, A. Tveito, G. T. Lines and X. Cai
                                                                                                                            International Journal of Numerical Analysis and Modeling, vol. 8, pp. 427—442, 2011
                                                                                                                          17. On Defining Candidate Drug Characteristics for Long-QT
                                                                                                                            A. Tveito, G. T. Lines, P. Li and A. D. McCulloch
                                                                                                                            Mathematical Biosciences and Engineering, vol. 8, pp. 861—873, 2011
                                                                                                                          18. Instabilities of the Resting State in a Mathematical Model of Calcium Handling in Cardiac Myocytes
                                                                                                                            A. Tveito, G. T. Lines, J. E. Hake and A. Edwards
                                                                                                                            Mathematical Biosciences, vol. 236, pp. 97—107, 2012, [DOI]
                                                                                                                          19. A Note on a Possible Pro-Arrhythmic Property of Anti-Arrhythmic Drugs Aimed at Improving Gap-Junction Coupling
                                                                                                                            A. Tveito, G. T. Lines and M. Maleckar
                                                                                                                            Biophysical Journal, vol. 102, pp. 231—237, 2012
                                                                                                                          20. An Analysis of the Shock Strength Needed to Achieve Defibrillation in a Simplified Mathematical Model of Cardiac Tissue
                                                                                                                            A. Tveito, G. T. Lines, M. E. Rognes and M. Maleckar
                                                                                                                            International Journal of Numerical Analysis and Modeling, vol. 9, pp. 644—657, 2012
                                                                                                                          21. Slow Calcium-Depolarization-Calcium Waves May Initiate Fast Local Depolarization Waves in Ventricular Tissue
                                                                                                                            A. Tveito, G. T. Lines, A. Edwards, M. Maleckar, A. P. Michailova, J. E. Hake and A. D. McCulloch
                                                                                                                            Progress in Biophysics and Molecular Biology, vol. 110, pp. 295—304, 2012
                                                                                                                          22. Mathematical Models of Cardiac Pacemaking Function
                                                                                                                            P. Li, G. T. Lines, M. Maleckar and A. Tveito
                                                                                                                            Frontiers in Physics, vol. 1, 2013, [DOI]
                                                                                                                          23. NS5806 Partially Restores Action Potential Duration But Fails to Ameliorate Calcium Transient Dysfunction in a Computational Model of Canine Heart Failure
                                                                                                                            M. Maleckar, G. T. Lines, J. Koivumäki, J. M. Cordeiro and K. Calloe
                                                                                                                            Europace, vol. 16, pp. iv46—iv55, 2014
                                                                                                                          24. Towards Simulation of Subcellular Calcium Dynamics at Nanometre Resolution
                                                                                                                            J. Chai, J. E. Hake, N. Wu, M. Wen, X. Cai, G. T. Lines, J. Yang, H. Su, C. Zhang and X. Liao
                                                                                                                            International Journal of High Performance Computing Applications, vol. 29, pp. 51—63, 2015, [DOI]
                                                                                                                          25. Scalable heterogeneous CPU-GPU computations for unstructured tetrahedral meshes
                                                                                                                            J. Langguth, M. Sourouri, G. T. Lines, S. Baden and X. Cai
                                                                                                                            IEEE Micro, vol. 35, pp. 6—15, 2015, [DOI]
                                                                                                                          26. Simple T wave metrics may better predict early ischemia as compared to ST segment
                                                                                                                            G. T. Lines, B. L. de Oliveira, O. Skavhaug and M. Maleckar
                                                                                                                            IEEE Transactions on Biomedical Engineering, 2016, [DOI]
                                                                                                                          27. Computing rates of Markov models of voltage-gated ion channels by inverting partial differential equations governing the probability density functions of the conducting and non-conducting states
                                                                                                                            A. Tveito, G. T. Lines, A. Edwards and A. D. McCulloch
                                                                                                                            Mathematical Biosciences, vol. 277, pp. 126—135, 2016
                                                                                                                          28. Studying dyadic structure-function relationships: a review of current modeling approaches and new insights into Ca2+ (mis)handling
                                                                                                                            M. M. Maleckar, A. Edwards, W. Louch and G. T. Lines
                                                                                                                            Clinical Medicine Insights: Cardiology, vol. 11, pp. 1—11, 2017, [DOI]
                                                                                                                          29. An Evaluation of the Accuracy of Classical Models for Computing the Membrane Potential and Extracellular Potential for Neurons
                                                                                                                            A. Tveito, K. H. Jæger, G. T. Lines, Ł. Paszkowski, J. Sundnes, A. Edwards, T. Mäki-Marttunen, G. Halnes and G. T. Einevoll
                                                                                                                            Frontiers in Computational Neuroscience, vol. 11, pp. 27, 2017

                                                                                                                          Books

                                                                                                                          1. Computing characterizations of drugs for ion channels and receptors using Markov models
                                                                                                                            A. Tveito and G. T. Lines
                                                                                                                            Springer, 2016

                                                                                                                          Chapters in Books

                                                                                                                          1. Computer Simulations of the Heart
                                                                                                                            G. T. Lines and J. Sundnes
                                                                                                                            in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 259—276, 2009

                                                                                                                          Talks

                                                                                                                          1. Cardiac Computing at Simula
                                                                                                                            G. T. Lines
                                                                                                                            Talk at CBC Workshop on Biomedical Computing, 2007
                                                                                                                          2. Overview of the Cardiac Computations Project
                                                                                                                            G. T. Lines
                                                                                                                            Talk at CBC, Seminar on Electrophysiology Modeling, 2007
                                                                                                                          3. Stochastic Binding of Ca2+ Ions in the Dyadic Cleft Continuous Vs Random Walk Description of Diffusion
                                                                                                                            J. E. Hake and G. T. Lines
                                                                                                                            Presentation at ICIAM 07, 2007
                                                                                                                          4. Stochastic Binding of Ca2+ Ions in the Dyadic Cleft Continuous Vs Random Walk Description of Diffusion
                                                                                                                            J. E. Hake and G. T. Lines
                                                                                                                            Poster presentation at 5th Annual CHFR Symposium, 2007
                                                                                                                          5. Modelling the Mesoscopic Length Scale of EC Coupling: the Diadic Cleft
                                                                                                                            J. E. Hake and G. T. Lines
                                                                                                                            Invited talk at 'European Conference on Mathematical and Theoretical Biology', 2008
                                                                                                                          6. Antiarrhythmic Drug Identifaction
                                                                                                                            G. T. Lines, A. Tveito and P. Li
                                                                                                                            Presented at the Bidomain Workshop, Graz, Austria, 2009
                                                                                                                          7. Elements of Scientific Computing
                                                                                                                            G. T. Lines and X. Cai
                                                                                                                            3-day intensive course given at National University of Defence Technology, China, October 16-18, 2012
                                                                                                                          8. Observability of Ischemia and the Need for Patient Specific Geometrical Models in Inverse ECG
                                                                                                                            G. T. Lines, O. M. Lysaker and B. F. Nielsen
                                                                                                                            Computing in Cardiology, Zaragoza, Spain, 2013

                                                                                                                          Posters

                                                                                                                          1. A Stochastic Model of the Ryanodine Receptor Featuring Coupled Gating and Competitive Binding of Luminal and Cytosolic Ca2+ and Mg2+
                                                                                                                            J. E. Hake, W. E. Louch, K. Haugen, I. Sjaastad, O. M. Sejersted, A. D. McCulloch, A. P. Michailova and G. T. Lines
                                                                                                                            2011
                                                                                                                          2. NS5806 Partially Restores APD But Fails to Ameliorate Ca2+ Transient Dysfunction in a Computational Model of Canine Heart Failure
                                                                                                                            M. Maleckar, G. T. Lines, J. Koivumäki, K. Calloe and J. Cordeiro
                                                                                                                            Europace 2014, 2013
                                                                                                                          3. Ca2+-Transient Dysfunction and Ion Channel Therapy: What Can We Gather From a Computational Model of Canine Heart Failure?
                                                                                                                            M. Maleckar, G. T. Lines and J. Koivumäki
                                                                                                                            , 2013

                                                                                                                          Public Outreach

                                                                                                                          1. Supercomputing-Enabled Study of Subcellular Calcium Dynamics
                                                                                                                            X. Cai, J. E. Hake and G. T. Lines
                                                                                                                            2014

                                                                                                                          Svein Linge

                                                                                                                            Articles in International Journals

                                                                                                                            1. On the Frequency of Automaticity During Ischemia in Simulations Based on Stochastic Perturbations of the Luo-Rudy 1 Model
                                                                                                                              S. Linge, G. T. Lines, J. Sundnes and A. Tveito
                                                                                                                              Computers in Biology and Medicine, vol. 38, pp. 1218—1227, 2008
                                                                                                                            2. Synchronizing Computer Simulations With Measurement Data for a Case of Atrial Flutter
                                                                                                                              G. T. Lines, S. Linge, M. C. MacLachlan and A. Tveito
                                                                                                                              Annals of Biomedical Engineering, vol. 37, pp. 1287—1293, 2009
                                                                                                                            3. Numerical Solution of the Bidomain Equations
                                                                                                                              S. Linge, J. Sundnes, M. Hanslien, G. T. Lines and A. Tveito
                                                                                                                              Philosophical Transactions of the Royal Society A, vol. 367, pp. 1931—1951, 2009
                                                                                                                            4. CSF Flow Dynamics at the Cranio-Vertebral Junction Studied With an Idealized Model of the Subarachnoid Space and Computational Flow Analysis
                                                                                                                              S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                              American Journal of Neuroradiology, vol. 31, pp. 185—192, 2009
                                                                                                                            5. Characterization of Cyclical CSF Flow in the Foramen Magnum and Upper Cervical Spinal Canal With MR Flow Imaging and Computational Fluid Dynamics
                                                                                                                              S. Hentschel, K.-A. Mardal, A. E. Løvgren, S. Linge and V. Haughton
                                                                                                                              American Journal of Neuroradiology, vol. 31, pp. 997—1002, 2010, [DOI]
                                                                                                                            6. Effect of Tonsilar Herniation on Cyclic CSF Flow Studied With Computational Flow Analysis
                                                                                                                              S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland and H. P. Langtangen
                                                                                                                              American Journal of Neuroradiology, vol. 32, pp. 1474—1481, 2011
                                                                                                                            7. Patient-Specific 3D Simulation of Cyclic CSF Flow at the Cranio-Cervical Region
                                                                                                                              G. Rutkowska, V. Haughton, S. Linge and K.-A. Mardal
                                                                                                                              American Journal of Neuroradiology, vol. 33, pp. 1756—1762, 2012
                                                                                                                            8. Estimation of CSF Flow Resistance in the Upper Cervical Spine
                                                                                                                              K.-A. Mardal, G. Rutkowska, S. Linge and V. Haughton
                                                                                                                              The Neuroradiology Journal, vol. 3, pp. 49—53, 2013
                                                                                                                            9. Simulating CSF Flow Dynamics in the Normal and the Chiari I Subarachnoid Space During Rest and Exertion
                                                                                                                              S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
                                                                                                                              American Journal of Neuroradiology, vol. 34, pp. 41—15, 2013
                                                                                                                            10. Effect of Cranio-Vertebral Decompression on CSF Dynamics in Chiari I Malformation Studied With Computational Fluid Dynamics
                                                                                                                              S. Linge, K.-A. Mardal, A. Helgeland, J. Heiss and V. Haughton
                                                                                                                              Journal of Neurosurgery, vol. 21, pp. 559—564, 2014

                                                                                                                            Books

                                                                                                                            1. Programming for Computations - A gentle Introduction to Numerical Simulations with MATLAB/Octave
                                                                                                                              S. Linge and H. P. Langtangen
                                                                                                                              Springer, 2016
                                                                                                                            2. Programming for Computations - A Gentle Introduction to Numerical Simulations with Python
                                                                                                                              S. Linge and H. P. Langtangen
                                                                                                                              Springer, 2016

                                                                                                                            Chapters in Books

                                                                                                                            1. Cerebrospinal Fluid Flow
                                                                                                                              S. Støle-Hentschel, S. Linge, A. E. Løvgren and K.-A. Mardal
                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 455—470, 2012

                                                                                                                            Refereed Proceedings

                                                                                                                            1. Effect of Tonsilar Position on Cerebrospinal Fluid Flow in the Spinal Subarachnoid Space Studied With Computational Fluid Dynamics
                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                              in ASNR - 47th Annual Meeting of the American Society of Neuroradiology, 2009
                                                                                                                            2. Cerebrospinal Fluid Flow Characteristics at Double Heart Rate
                                                                                                                              S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
                                                                                                                              in Neuroradiology, 53 (Suppl. 1), S33, 35th European Soc of Neuroradiology ann. meeting, Antwerpen, Belgium, 2011
                                                                                                                            3. Cyclic Cerebrospinal Fluid Flow (I): Towards the Understanding of Cerebrospinal Fluid Flow Dynamics in Chiari I Malformation
                                                                                                                              S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland, H. P. Langtangen and K.-H. Støverud
                                                                                                                              in ASNR 49th Annual Meeting & the Foundation of the ASNR Symposium, June 4 - 9, 2011., 2011

                                                                                                                            Conference Proceedings

                                                                                                                            1. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                                                                              A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                              in 21st Nordic Seminar on Computational Mechanics, 2008

                                                                                                                            Talks

                                                                                                                            1. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                                                                              A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                              Invited talk at the 21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
                                                                                                                            2. Chiari Malformation - the Problem and a Mathematical Approach
                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                              Invited talk, Vindern Medical Center, 8th of December, Oslo, Norway, 2008
                                                                                                                            3. Cerebrospinal Fluid Flow in Normal and Chiari Subjects
                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                              talk, Seminar at CBC (Simula Research Laboratory), 16th of December, Oslo, Norway, 2008
                                                                                                                            4. Cerebrospinal Fluid Flow Simulations - Normal Subjects and Patients With Chiari I Malformation
                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                              talk, Seminar at CBC (Simula Research Laboratory), 31st of October, Oslo, Norway), 2008
                                                                                                                            5. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                              talk, Seminar at CBC (Simula Research Laboratory), 25th of June, Oslo, Norway., 2008
                                                                                                                            6. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                              talk, Seminar at CBC (Simula Research Laboratory), 20th of May, Oslo, Norway., 2008
                                                                                                                            7. Patient-Specific Simulations of Stroke and Syringomyelia
                                                                                                                              K.-A. Mardal, S. Hentschel, A. Helgeland, H. P. Langtangen, S. Linge, A. E. Løvgren, A. Logg and K. Valen-Sendstad
                                                                                                                              Talk : Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, Nov 03, 2009
                                                                                                                            8. CSF Flow Modelling
                                                                                                                              K.-A. Mardal, V. Haughton, S. Hentschel, H. P. Langtangen, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                                                              Invited talk at CSR Flow Research Conference at University of Wisconsin, Nov 9, 2009
                                                                                                                            9. Cerebrospinal Fluid Flow Investigations With Modelling and Simulation
                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                              invited talk at The Chiari Institute, 14th of January, New York, U.S.A., 2009
                                                                                                                            10. Simulating Normal and Abnormal CSF Flow With Idealized Geometries
                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                              talk, seminar on cerebrospinal fluid flow, 16th of January, University of Wisconsin, U.S.A., 2009
                                                                                                                            11. Tonsilar Herniation - How Is the CSF Flow Influenced?
                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                              Invited talk at Rikshospitalet University Hospital, Oslo, Norway, 5th of June, 2009
                                                                                                                            12. Some Biomedical Applications at Simula
                                                                                                                              K.-A. Mardal, A. Helgeland, S. Hentschel, H. P. Langtangen, A. Logg, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                                                              Talk at the CBC Workshop on Computational Biology with UMB, 2009
                                                                                                                            13. Cerebrospinal Fluid Flow in the Upper Cervical Canal in Patients With the Chiari I Malformation
                                                                                                                              K.-A. Mardal, K.-H. Støverud, V. Haughton, S. Linge, H. P. Langtangen, G. Rutkowska and I. N. Drøsdal
                                                                                                                              1ST CSF Hydrodynamics Symposium, 2011

                                                                                                                            Malin Ljungberg

                                                                                                                              Talks

                                                                                                                              1. Requirements on PDE Solver Componentsfor Multiphysics Simulation
                                                                                                                                M. Ljungberg
                                                                                                                                Talk at Works on Software issues in Computational Science and Engineering, 2007

                                                                                                                              Anders Logg

                                                                                                                                Articles in International Journals

                                                                                                                                1. Efficient Compilation of a Class of Variational Forms
                                                                                                                                  R. C. Kirby and A. Logg
                                                                                                                                  ACM Transactions on Mathematical Software, vol. 33, 2007
                                                                                                                                2. Automating the Finite Element Method
                                                                                                                                  A. Logg
                                                                                                                                  Archives of Computational Methods in Engineering, vol. 14, pp. 93—138, 2007
                                                                                                                                3. Algorithms and Data Structures for Multi-Adaptive Time-Stepping
                                                                                                                                  J. Jansson and A. Logg
                                                                                                                                  ACM Transactions on Mathematical Software, vol. 35, pp. 1—24, 2008
                                                                                                                                4. Benchmarking Domain-Specific Compiler Optimizations for Variational Forms
                                                                                                                                  R. C. Kirby and A. Logg
                                                                                                                                  ACM Transactions on Mathematical Software, vol. 35, pp. 1—18, 2008
                                                                                                                                5. Automated Code Generation for Discontinuous Galerkin Methods
                                                                                                                                  K. B. Oelgaard, A. Logg and G. N. Wells
                                                                                                                                  SIAM Journal on Scientific Computing, vol. 31, pp. 849—864, 2008
                                                                                                                                6. Unified Framework for Finite Element Assembly
                                                                                                                                  M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
                                                                                                                                  International Journal of Computational Science and Engineering, vol. 4, pp. 231—244, 2009
                                                                                                                                7. Efficient Assembly of H(div) and H(curl) Conforming Finite Elements
                                                                                                                                  M. E. Rognes, R. C. Kirby and A. Logg
                                                                                                                                  SIAM Journal on Scientific Computing, vol. 36, pp. 4130—4151, 2009
                                                                                                                                8. Efficient Representation of Computational Meshes
                                                                                                                                  A. Logg
                                                                                                                                  International Journal of Computational Science and Engineering, vol. 4, pp. 283—295, 2009
                                                                                                                                9. DOLFIN: Automated Finite Element Computing
                                                                                                                                  A. Logg and G. N. Wells
                                                                                                                                  ACM Transactions on Mathematical Software, vol. 37, 2010
                                                                                                                                10. An Adaptive Finite Element Splitting Method for the Incompressible Navier-Stokes Equations
                                                                                                                                  K. Selim, A. Logg and M. G. Larson
                                                                                                                                  Computer Methods in Applied Mechanics and Engineering, vol. 209-212, pp. 54—65, 2012, [DOI]
                                                                                                                                11. Efficient Implementation of Finite Element Methods on Nonmatching and Overlapping Meshes in Three Dimensions
                                                                                                                                  A. Massing, M. G. Larson and A. Logg
                                                                                                                                  SIAM Journal on Scientific Computing, vol. 35, pp. C23—C47, 2013, [DOI]
                                                                                                                                12. Automated Goal-Oriented Error Control I: Stationary Variational Problems
                                                                                                                                  M. E. Rognes and A. Logg
                                                                                                                                  SIAM Journal on Scientific Computing, vol. 35, pp. 173—193, 2013
                                                                                                                                13. Unified Form Language: a Domain-Specific Language for Weak Formulations of Partial Differential Equations
                                                                                                                                  M. S. Alnæs, A. Logg, K. B. Ølgaard, M. E. Rognes and G. N. Wells
                                                                                                                                  ACM Transactions on Mathematical Software, vol. 40, 2014
                                                                                                                                14. A Stabilized Nitsche Fictitious Domain Method for the Stokes Problem
                                                                                                                                  A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                                  Journal of Scientific Computing, vol. 61, pp. 604—628, 2014, [DOI]
                                                                                                                                15. A Stabilized Nitsche Overlapping Mesh Method for the Stokes Problem
                                                                                                                                  A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                                  Numerische Mathematik, vol. 128, pp. 73—101, 2014, [DOI]
                                                                                                                                16. Periodic table of the Finite Elements
                                                                                                                                  D. N. Arnold and A. Logg
                                                                                                                                  SIAM News, vol. 47, 2014
                                                                                                                                17. A Nitsche-based Cut Finite Element Method for a Fluid-Structure Interaction Problem
                                                                                                                                  A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                                  Communications in Applied Mathematics and Computational Science, vol. 10, pp. 97—120, 2015, [DOI]
                                                                                                                                18. The FEniCS Project Version 1.5
                                                                                                                                  M. S. Alnæs, J. Blechta, J. E. Hake, A. Johansson, B. Kehlet, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
                                                                                                                                  Archive of Numerical Software, vol. 3, 2015
                                                                                                                                19. High order cut finite element methods for the Stokes problem
                                                                                                                                  A. Johansson, M. G. Larson and A. Logg
                                                                                                                                  Advanced Modeling and Simulation in Engineering Sciences, vol. 2, 2015, [DOI]
                                                                                                                                20. A posteriori error analysis of round-off errors in the numerical solution of ordinary differential equations
                                                                                                                                  B. Kehlet and A. Logg
                                                                                                                                  Numerical Algorithms, vol. 76, 2017, [DOI]

                                                                                                                                Edited Books

                                                                                                                                1. Automated Solution of Differential Equations by the Finite Element Method
                                                                                                                                  A. Logg, K.-A. Mardal and G. N. Wells
                                                                                                                                  Springer, 2012
                                                                                                                                2. Proceedings of the 26th Nordic Seminar on Computational Machanics
                                                                                                                                  A. Logg, K.-A. Mardal and A. Massing
                                                                                                                                  Simula Research Laboratory, 2013

                                                                                                                                Chapters in Books

                                                                                                                                1. A Hybrid Approach to Efficient Finite Element Code Development
                                                                                                                                  A. Logg, K.-A. Mardal, M. S. Alnæs, H. P. Langtangen and O. Skavhaug
                                                                                                                                  in Petascale Computing - Algorithms and Applications, Edited by D. A. Bader, Chapman and Hall, 2007
                                                                                                                                2. Att Lösa En Differentialekvation
                                                                                                                                  A. Logg
                                                                                                                                  in Människor och matematik. Läsebok för nyfikna, Edited by O. Helenius and K. Wallby, Nationellt centrum för matematikutbildning, NCM, pp. 95—110, 2008
                                                                                                                                3. Past and Future Perspectives on Scientific Software
                                                                                                                                  A. Logg, H. P. Langtangen and X. Cai
                                                                                                                                  in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 321—362, 2009
                                                                                                                                4. FErari: an Optimizing Compiler for Variational Forms
                                                                                                                                  R. C. Kirby and A. Logg
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 235—243, 2012
                                                                                                                                5. UFC: a Finite Element Code Generation Interface
                                                                                                                                  M. S. Alnæs, A. Logg and K.-A. Mardal
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 279—298, 2012
                                                                                                                                6. Finite Element Variational Forms
                                                                                                                                  R. C. Kirby and A. Logg
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 129—136, 2012
                                                                                                                                7. DOLFIN: a C++/Python Finite Element Library
                                                                                                                                  A. Logg, G. N. Wells and J. E. Hake
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 173—225, 2012
                                                                                                                                8. Common and Unusual Finite Elements
                                                                                                                                  R. C. Kirby, A. Logg, M. E. Rognes and A. R. Terrel
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 91—116, 2012
                                                                                                                                9. Finite Element Assembly
                                                                                                                                  A. Logg, K.-A. Mardal and G. N. Wells
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 137—142, 2012
                                                                                                                                10. Tensor Representation of Finite Element Variational Forms
                                                                                                                                  R. C. Kirby and A. Logg
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 157—167, 2012
                                                                                                                                11. Discrete Optimization of Finite Element Matrix Evaluation
                                                                                                                                  R. C. Kirby, M. G. Knepley, A. Logg, R. Scott and A. R. Terrel
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 161—168, 2012
                                                                                                                                12. A Comparison of Some Common Finite Element Schemes for the Incompressible Navier-Stokes Equations
                                                                                                                                  K. Valen-Sendstad, A. Logg, K.-A. Mardal, H. Narayanan and M. Mortensen
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 395—418, 2012
                                                                                                                                13. Computational Hemodynamics
                                                                                                                                  K. Valen-Sendstad, K.-A. Mardal and A. Logg
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 439—454, 2012
                                                                                                                                14. The Finite Element Method
                                                                                                                                  R. C. Kirby and A. Logg
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 73—90, 2012
                                                                                                                                15. FFC: the FEniCS Form Compiler
                                                                                                                                  A. Logg, K. B. Ølgaard, M. E. Rognes and G. N. Wells
                                                                                                                                  in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 223—234, 2012

                                                                                                                                Refereed Proceedings

                                                                                                                                1. Efficient Representation of Computational Meshes
                                                                                                                                  A. Logg
                                                                                                                                  in MekIT'07. Fourth National Conference on Computational Mechanics, 2007
                                                                                                                                2. Multiscale Modeling of the Acoustic Properties of Lung Parenchyma
                                                                                                                                  M. Siklosi, O. Jensen, R. Tew and A. Logg
                                                                                                                                  in Modelling of the Respiratory System Biomechanical, Computational and Mathematical Aspects, 2008
                                                                                                                                3. Simulating Heart Valve Dynamics in FEniCS
                                                                                                                                  K. Selim and A. Logg
                                                                                                                                  in MekIT´09. Fifth National Conference on Computational Mechanics, 2009
                                                                                                                                4. Exploring Automated Adaptivity and Error Control
                                                                                                                                  M. E. Rognes and A. Logg
                                                                                                                                  in AIP Conference Proceedings, 2010
                                                                                                                                5. Towards an Implementation of Nitsche's Method on Overlapping Meshes in 3D
                                                                                                                                  A. Massing, M. G. Larson and A. Logg
                                                                                                                                  in AIP Conference Proceedings (ICNAAM 2010), 2010
                                                                                                                                6. A Reference Solution for the Lorenz System on [0, 1000]
                                                                                                                                  B. Kehlet and A. Logg
                                                                                                                                  in AIP Conference Proceedings, 2010
                                                                                                                                7. Building Flexible User Interfaces for Solving PDEs
                                                                                                                                  A. Logg and G. N. Wells
                                                                                                                                  in AIP Conference Proceedings, 2010
                                                                                                                                8. A Newton Method for Fluid-Structure Interaction Using Full Jacobians Based on Automatic Form Differentiation
                                                                                                                                  G. Balaban, A. Logg and M. E. Rognes
                                                                                                                                  in 6th European Congress on Computational Methods in Applied Sciences and Engineering, ECCOMAS 2012, 2012
                                                                                                                                9. Automatically Generated Solvers for Variational Formulations of Time-Dependent Partial Differential Equations
                                                                                                                                  M. E. Rognes, B. Kehlet and A. Logg
                                                                                                                                  in 6th European Congress on Computational Methods in Applied Sciences and Engineering, ECCOMAS 2012, 2012
                                                                                                                                10. Quantifying the Computability of the Lorenz System
                                                                                                                                  B. Kehlet and A. Logg
                                                                                                                                  in Proceedings of the VI International Conference on Adaptive Modeling and Simulation (ADMOS 2013), 2013

                                                                                                                                Conference Proceedings

                                                                                                                                1. Automated Solution of Differential Equations
                                                                                                                                  A. Logg
                                                                                                                                  in ICIAM 2007: 6th International Congress on Industrial and Applied Mathematics, 2007
                                                                                                                                2. Collaborative Computational Frameworks and the Growth Problem
                                                                                                                                  H. Narayanan, K. Garikipati and A. Logg
                                                                                                                                  in The mathematics of growth and remodelling of soft biological tissues, 2008
                                                                                                                                3. Automated Computational Modelling for Solid Mechanics
                                                                                                                                  K. B. Oelgaard, G. N. Wells and A. Logg
                                                                                                                                  in IUTAM Symposium on Theoretical, Modelling and Computational Aspects of Inelastic Media, 2008
                                                                                                                                4. An Overview of the FEniCS Project
                                                                                                                                  A. Logg
                                                                                                                                  in 21st Nordic Seminar on Computational Mechanics, 2008

                                                                                                                                Manuals

                                                                                                                                1. DOLFIN User Manual
                                                                                                                                  A. Logg and G. N. Wells
                                                                                                                                  2007
                                                                                                                                2. FFC User Manual
                                                                                                                                  A. Logg
                                                                                                                                  2007
                                                                                                                                3. UFC Specification and User Manual 1.0
                                                                                                                                  M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
                                                                                                                                  2007
                                                                                                                                4. UFL Specification and User Manual
                                                                                                                                  M. S. Alnæs and A. Logg
                                                                                                                                  2009

                                                                                                                                Talks

                                                                                                                                1. Efficient Representation of Computational Meshes
                                                                                                                                  A. Logg
                                                                                                                                  Talk at MekIT'07, Trondheim, 2007-05-23, 2007
                                                                                                                                2. Software Components for Solving PDEs
                                                                                                                                  A. Logg and O. Skavhaug
                                                                                                                                  Talk at Modelling and Computation of Biomedical Processess Workshop, Simula Oslo, 2007-06-12, 2007
                                                                                                                                3. Finite Element Code Generation: Simplicity, Generality, Efficiency
                                                                                                                                  A. Logg
                                                                                                                                  Talk at Software Issues in Computational Science and Engineering (SCSE 2007), Uppsala, 2007-08-11, 2007
                                                                                                                                4. Activities at Simula: FEniCS and the Center for Biomedical Computing
                                                                                                                                  A. Logg
                                                                                                                                  Computational and Applied Mathematics Seminar, Chalmers Göteborg, 2007-09-26, 2007
                                                                                                                                5. Automated Solution of Differential Equations
                                                                                                                                  A. Logg
                                                                                                                                  Talk at 6th International Congress on Industrial and Applied Mathematics (ICIAM 2007), Zürich, 2007-07-18, 2007
                                                                                                                                6. A Symbolic Engine for Finite Element Exterior Calculus
                                                                                                                                  A. Logg
                                                                                                                                  Talk at the European Finite Element Fair 2008, Chalmers, Gøteborg, 30th of May, 2008
                                                                                                                                7. FSI Development at CBC
                                                                                                                                  A. Logg
                                                                                                                                  Invited speaker at the Workshop on FSI for Biomedical Applications, Trondheim, 8th of September, 2008
                                                                                                                                8. The FEniCS Project
                                                                                                                                  A. Logg
                                                                                                                                  Inviteted speaker at the Workshop on Data Structures for Finite Element and Finite Volume Computations, Freie Universität Berlin, 29th of February, 2008
                                                                                                                                9. Just-in-Time Compilation of Finite Element Variational Forms
                                                                                                                                  A. Logg
                                                                                                                                  Talk at the Finite Element Circus and Rodeo, Louisiana State University, Baton Rogue, USA, 7th of March, 2008
                                                                                                                                10. FEniCS Tutorial
                                                                                                                                  A. Logg
                                                                                                                                  Talk at CBC Seminar, Oslo, 6th of November, 2008
                                                                                                                                11. A Symbolic Engine for Finite Element Exterior Calculus
                                                                                                                                  A. Logg
                                                                                                                                  Talk at the Workshop on Automating the Development of Scientific Computing Software (FEniCS'08), Lousiana State University, Baton Rogue, USA, 5th of March, 2008
                                                                                                                                12. Developing Flow Solver Methodology for Patientspecific Simulation of Hemodynamics
                                                                                                                                  K. Valen-Sendstad, A. Logg and K.-A. Mardal
                                                                                                                                  Talk at Workshop on Finite Element Methods for Fluids and Fluid-Structure Interaction, June 5, 2008
                                                                                                                                13. FEniCS: Automated Computing
                                                                                                                                  A. Logg
                                                                                                                                  Workshop on Computational Fluid Dynamics, Simula Research Laboratory, Oslo, 2009-05-04, 2009
                                                                                                                                14. Introduction to FEniCS'09
                                                                                                                                  A. Logg
                                                                                                                                  Talk at FEniCS'09, Simula Research Laboratory, Oslo, 2009-06-11, 2009
                                                                                                                                15. Cerebral Blood Flow
                                                                                                                                  K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
                                                                                                                                  Invited talk at Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009, 2009
                                                                                                                                16. Simulating the Heart Valve Dynamics in FEniCS
                                                                                                                                  K. Selim and A. Logg
                                                                                                                                  Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                17. Automatic Code Generation and the FEniCS Project
                                                                                                                                  A. Logg
                                                                                                                                  Talk at Opportunities and Challenges in Computational Geodynamics, Caltech, 2009-03-30, 2009
                                                                                                                                18. Automated Finite Element Discretization
                                                                                                                                  A. Logg
                                                                                                                                  Talk at Workshop on Compatible and Innovative Discretizations for Partial Differential Equations, Oslo, 2009-06-18, 2009
                                                                                                                                19. Patient-Specific Simulations of Stroke and Syringomyelia
                                                                                                                                  K.-A. Mardal, S. Hentschel, A. Helgeland, H. P. Langtangen, S. Linge, A. E. Løvgren, A. Logg and K. Valen-Sendstad
                                                                                                                                  Talk : Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, Nov 03, 2009
                                                                                                                                20. Parallel Data Structures and Algorithms in DOLFIN
                                                                                                                                  A. Logg
                                                                                                                                  Talk at HPC Workshop, Simula Research Laboratory, Oslo, 2009-06-16, 2009
                                                                                                                                21. Simulation Methodology for Bioflows
                                                                                                                                  K. Valen-Sendstad, K.-A. Mardal and A. Logg
                                                                                                                                  Talk : Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, May 05, 2009
                                                                                                                                22. Patient-Specific Hemodynamics in FEniCS
                                                                                                                                  K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
                                                                                                                                  Invited talk at the minisymposium on Computational Vascular and Cardiovascular Mechanics at USNCCM 2009, 2009
                                                                                                                                23. Patient-Specific Hemodynamics in FEniCS
                                                                                                                                  K.-A. Mardal, A. Logg, S. Hentschel, O. C. Myklebust and K. Valen-Sendstad
                                                                                                                                  Presentation at the FEniCS 09 Workshop, 2009
                                                                                                                                24. DOLFIN: Automated Finite Element Computing
                                                                                                                                  A. Logg
                                                                                                                                  Talk at ENUMATH'09, Uppsala, 2009-07-03, 2009
                                                                                                                                25. Some Biomedical Applications at Simula
                                                                                                                                  K.-A. Mardal, A. Helgeland, S. Hentschel, H. P. Langtangen, A. Logg, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                                                                  Talk at the CBC Workshop on Computational Biology with UMB, 2009
                                                                                                                                26. Implementation of FEM Assembling in DOLFIN
                                                                                                                                  A. Logg
                                                                                                                                  AC/DC seminar series, 2010
                                                                                                                                27. FEniCS: Automated Scientific Computing
                                                                                                                                  A. Logg
                                                                                                                                  8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
                                                                                                                                28. Nya Verktyg, Nya Möjligheter
                                                                                                                                  A. Logg
                                                                                                                                  Sveriges matematiklärarförening (SMaL), 2010
                                                                                                                                29. FEniCS 1.0 (?)
                                                                                                                                  A. Logg
                                                                                                                                  FEniCS'10, KTH, Stockholm, 2010
                                                                                                                                30. Automated Goal-Oriented Error Control for Stationary Variational Problems
                                                                                                                                  M. E. Rognes and A. Logg
                                                                                                                                  Talk at FEniCS'10, KTH Royal Institute of Technology, Stockholm, 2010
                                                                                                                                31. Automated Goal-Oriented Error Control for Stationary Variational Problems
                                                                                                                                  M. E. Rognes and A. Logg
                                                                                                                                  Presentation at the European Finite Element Fair 2010, University of Warwick, 2010
                                                                                                                                32. A Framework for Automated Goal-Oriented Error Control
                                                                                                                                  M. E. Rognes and A. Logg
                                                                                                                                  Talk at BIT 50 - Trends in Numerical Computing, 2010
                                                                                                                                33. Automated Scientific Computing
                                                                                                                                  A. Logg
                                                                                                                                  23rd Chemnitz FEM Symposium, 2010
                                                                                                                                34. Automated Scientific Computing
                                                                                                                                  A. Logg
                                                                                                                                  Docentföreläsning, Chalmers University of Technology, 2010
                                                                                                                                35. A Reference Solution for the Lorenz System on [0, 1000]
                                                                                                                                  B. Kehlet and A. Logg
                                                                                                                                  8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
                                                                                                                                36. Automated Goal-Oriented Error Control
                                                                                                                                  A. Logg and M. E. Rognes
                                                                                                                                  China-Norway-Sweden Workshop on Computational Mathematics, 2010
                                                                                                                                37. Automated Goal-Oriented Error Control With Applications to Fluid Flow
                                                                                                                                  M. E. Rognes and A. Logg
                                                                                                                                  Talk at CBC Workshop on Cerebral Blood Flow and Stroke - Clinical, Experimental and Mathematical Models and Problems, 2010
                                                                                                                                38. Automated Goal-Oriented Error Control With Applications to Nonlinear Elasticity
                                                                                                                                  M. E. Rognes and A. Logg
                                                                                                                                  Talk at DSPDEs 2010 - Emerging Topics in Dynamical Systems and Partial Differential Equations, Barcelona, 2010
                                                                                                                                39. Solving Poisson's Equation With DOLFIN 0.2.11 (2002): a Study of the Portability of Scientific Codes Across the Time Domain
                                                                                                                                  A. Logg
                                                                                                                                  Talk at Biocomp Seminar, Simula Research Laboratory, 2011-09-28, 2011
                                                                                                                                40. Adaptive Finite Element Methods for Fluid-Structure Interaction and Incompressible Flow
                                                                                                                                  A. Logg
                                                                                                                                  Talk at FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, 2011-11-03, 2011
                                                                                                                                41. Adaptive Finite Element Methods for Fluid-Structure Interaction and Incompressible Flow
                                                                                                                                  A. Logg
                                                                                                                                  Talk at Simula/NTNU Workshop, Simula Research Laboratory, 2011-11-17, 2011
                                                                                                                                42. The FEniCS Project
                                                                                                                                  A. Logg
                                                                                                                                  Talk at EuroSciPy 2011 / Python in Physics, Ecole normale supérieure, Paris, 2011-08-09, 2011
                                                                                                                                43. The FEniCS Project
                                                                                                                                  A. Logg
                                                                                                                                  Workshop on Multiscale Problems and Methods, Simula Research Laboratory, 2011-06-17, 2011
                                                                                                                                44. The FEniCS Project
                                                                                                                                  A. Logg
                                                                                                                                  Talk at NOTUR 2011, University of Oslo, 2011-05-23, 2011
                                                                                                                                45. The FEniCS Project
                                                                                                                                  A. Logg
                                                                                                                                  Talk at Det Norske Veritas 2011-05-11, 2011
                                                                                                                                46. The FEniCS Project - Organization, Practices, Maintenance and Distribution
                                                                                                                                  A. Logg
                                                                                                                                  CBC seminar series, 2013
                                                                                                                                47. CCFEM implementation in FEniCS
                                                                                                                                  A. Logg
                                                                                                                                  Simula multiphysics workshop, 2014
                                                                                                                                48. Automated Solution of Differential Equations
                                                                                                                                  A. Logg
                                                                                                                                  Computer science and engineering seminar, Chalmers University of Technology, Gothenburg, Sweden, 2014
                                                                                                                                49. A Finite Element method for the Einstein-Vlasov system
                                                                                                                                  A. Logg
                                                                                                                                  Biocomp lunch seminar, Simula, Oslo, 2014
                                                                                                                                50. Periodic table of the Finite Elements (part I)
                                                                                                                                  A. Logg
                                                                                                                                  Computational and Applied Mathematics seminar, Chalmers University of Technology, Gothenburg, Sweden, 2014
                                                                                                                                51. Automated Solution of Differential Equations
                                                                                                                                  A. Logg
                                                                                                                                  Hyperfit seminar, University of Copnehagen, Denmark, 2014
                                                                                                                                52. Periodic table of the Finite Elements (part II)
                                                                                                                                  A. Logg
                                                                                                                                  Computational and Applied Mathematics seminar, Chalmers University of Technology, Gothenburg, Sweden, 2014
                                                                                                                                53. Periodic table of the Finite Elements (part III)
                                                                                                                                  A. Logg
                                                                                                                                  Computational and Applied Mathematics seminar, Chalmers University of Technology, Gothenburg, Sweden, 2014
                                                                                                                                54. Multimesh FEM in FEniCS
                                                                                                                                  A. Logg
                                                                                                                                  FEniCS'14 Workshop, University of Chicago center in Paris, France, 2014
                                                                                                                                55. Automated Solution of Differential Equations
                                                                                                                                  A. Logg
                                                                                                                                  Svenska matematikersamfunnets høstmøte, 2014
                                                                                                                                56. Periodic table of the Finite Elements
                                                                                                                                  A. Logg
                                                                                                                                  Biocomp lunch seminar, Simula, Oslo, 2014
                                                                                                                                57. Towards a Unified Framework for Automated a Posteriori Error Estimation and Adaptivity in Space-Time
                                                                                                                                  M. E. Rognes, B. Kehlet, A. Logg and M. S. Alnæs
                                                                                                                                  SIAM CSE, Salt Lake City, USA, 2015
                                                                                                                                58. Towards an Adaptive Einstein-Vlasov Solver
                                                                                                                                  A. Logg
                                                                                                                                  Oslo, Simula Research Laboratory, 2015
                                                                                                                                59. High order methods on arbitrarily many intersecting meshes: Multimesh
                                                                                                                                  A. Johansson, B. Kehlet, M. G. Larson and A. Logg
                                                                                                                                  FEF 2017, Rome, 2017
                                                                                                                                60. FEM on arbitrarily many intersecting meshes: Multimesh
                                                                                                                                  A. Johansson, B. Kehlet, M. G. Larson and A. Logg
                                                                                                                                  European Finite element fair, 2017, Milano, 2017

                                                                                                                                Posters

                                                                                                                                1. FEniCS: Sustainable Software Development Practices
                                                                                                                                  M. S. Alnæs, J. Blechta, J. S. Hale, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
                                                                                                                                  2017

                                                                                                                                Public Outreach

                                                                                                                                1. Vad går at berekna, vad går inte? Om fraktaler - matematiske fantasiskapelser - och kaos
                                                                                                                                  A. Logg
                                                                                                                                  2014

                                                                                                                                Ralph Lorentzen

                                                                                                                                  Technical Reports

                                                                                                                                  1. Extrapolation From a Very Low Number of Computer Experiments
                                                                                                                                    R. Lorentzen, Ø. Hjelle, H. P. Langtangen and A. M. Bruaset
                                                                                                                                    Simula Research Laboratory, 2010
                                                                                                                                  2. Finding the Set of Measurements Necessary to Reveal the State of a Static System
                                                                                                                                    R. Lorentzen
                                                                                                                                    Simula Research Laboratory, 2011

                                                                                                                                  Ola Marius Lysaker

                                                                                                                                    Articles in International Journals

                                                                                                                                    1. A Linear System of Partial Differential Equations Modeling the Resting Potential of a Heart With Regional Ischemia
                                                                                                                                      M. C. MacLachlan, J. Sundnes, O. Skavhaug, O. M. Lysaker, B. F. Nielsen and A. Tveito
                                                                                                                                      Mathematical Biosciences, vol. 210, pp. 238—252, 2007
                                                                                                                                    2. On the Possibility for Computing the Transmembrane Potential in the Heart With a One Shot Method; an Inverse Problem
                                                                                                                                      B. F. Nielsen, X. Cai and O. M. Lysaker
                                                                                                                                      Mathematical Biosciences, vol. 210, pp. 523—553, 2007
                                                                                                                                    3. On the Use of the Resting Potential and Level Set Methods for Identifying Ischemic Heart Disease; an Inverse Problem
                                                                                                                                      B. F. Nielsen, O. M. Lysaker and A. Tveito
                                                                                                                                      Journal of Computational Physics, vol. 220, pp. 772—790, 2007
                                                                                                                                    4. Level Set Method for Positron Emission Tomography
                                                                                                                                      T. Chan, H. Li, O. M. Lysaker and X.-C. Tai
                                                                                                                                      International Journal of Biomedical Imaging, pp. 1—15, 2007
                                                                                                                                    5. A Computationally Efficient Method for Determining the Size and Location of Myocardial Ischemia
                                                                                                                                      T. S. Ruud, B. F. Nielsen, O. M. Lysaker and J. Sundnes
                                                                                                                                      IEEE Transactions on Biomedical Engineering, vol. 56, pp. 263—272, 2009
                                                                                                                                    6. Computing Ischemic Regions in the Heart With the Bidomain Model; First Steps Towards Validation
                                                                                                                                      B. F. Nielsen, O. M. Lysaker and P. Grøttum
                                                                                                                                      IEEE Transactions on Medical Imaging, vol. 32, pp. 1085—1096, 2013

                                                                                                                                    Edited Books

                                                                                                                                    1. Scale Space and Variational Methods in Computer Vision
                                                                                                                                      X.-C. Tai, K. Mørken, O. M. Lysaker and K.-A. Lie
                                                                                                                                      Springer, 2009

                                                                                                                                    Chapters in Books

                                                                                                                                    1. Can ECG Recordings and Mathematics Tell the Condition of Your Heart?
                                                                                                                                      B. F. Nielsen, O. M. Lysaker, P. Grøttum, K.-A. Mardal, A. Tveito, C. Tarrou, K. Haugaa, A. Abildgaard and J. G. Fjeld
                                                                                                                                      in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 287—319, 2009

                                                                                                                                    Refereed Proceedings

                                                                                                                                    1. Mathematical Based Imaging of Regional Ischemia
                                                                                                                                      O. M. Lysaker, B. F. Nielsen, P. Grøttum, K. Haugaa, J. G. Fjeld and A. Abildgaard
                                                                                                                                      in World Congress on Medical Physics and Biomedical Engineering, 2009
                                                                                                                                    2. On the Use of the Bidomain Model for Computing the Position and Size of Ischemic Regions; a Validation Study
                                                                                                                                      O. M. Lysaker, B. F. Nielsen and P. Grøttum
                                                                                                                                      in Computing in Cardiology, 2012
                                                                                                                                    3. Computing Ischemic Regions in the Heart: on the Use of Internal Electrodes
                                                                                                                                      O. M. Lysaker, B. F. Nielsen and S. Wall
                                                                                                                                      in Computing in Cardiology Conference (CinC), 2013
                                                                                                                                    4. Bidomain Simulations of Subendocardial Ischemia: the Forward and Inverse Problems
                                                                                                                                      O. M. Lysaker, B. F. Nielsen and S. Wall
                                                                                                                                      in Computing in Cardiology Conference, 2014

                                                                                                                                    Talks

                                                                                                                                    1. Can Inverse Problems Tell You the Condition of Your Heart?
                                                                                                                                      B. F. Nielsen, O. M. Lysaker and M. G. Larson
                                                                                                                                      Zurich Intelligencer; International Congress on Industrial and Applied Mathematics (ICIAM), Springer-Verlag, 2007
                                                                                                                                    2. PDE Methods for Identifying Ischemic Heart Disease
                                                                                                                                      O. M. Lysaker and B. F. Nielsen
                                                                                                                                      Presented at the 6th International Congress on Industrial and Applied Mathematics, 2007
                                                                                                                                    3. On the Use of Computer Simulations for Identifying Ischemic Heart Disease; Theoretical and Practical Aspects
                                                                                                                                      B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. Haugaa
                                                                                                                                      Presented at the workshop Mathematics in Medicine/Biology, Centre of Mathematics for Applications, Department of Mathematics, University of Oslo, 2008
                                                                                                                                    4. Computer Simulations for Identifying Ischemic Heart Disease; a Validation Study
                                                                                                                                      O. M. Lysaker, B. F. Nielsen, P. Grøttum, A. Abildgaard, J. Fjeld and K. Haugaa
                                                                                                                                      Presented at the BBG-MedViz seminar at the Department of Mathematics, University of Bergen, 2008
                                                                                                                                    5. Theoretical and Practical Aspects of the Inverse Problem of Electrocardiography
                                                                                                                                      B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. Haugaa
                                                                                                                                      Presented at Institut für Mathematik und Wissenschaftliches Rechnen, Karl Franzes Universität in Graz, Austria. Also presented at Institut für Numerische und Angewandte Mathematik, Westfälische Wilhelms-Universität Münster, Germany, 2008
                                                                                                                                    6. Theoretical and Practical Aspects of the Inverse Problem of Electrocardiography
                                                                                                                                      O. M. Lysaker, B. F. Nielsen, P. Grøttum, A. Abildgaard, J. Fjeld and K. Haugaa
                                                                                                                                      Presented at the Fourth International Conference Inverse Problems: Modeling and Simulation, Turkey, 2008
                                                                                                                                    7. The Inverse Problem of Identifying Ischemic Heart Disease
                                                                                                                                      B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. Haugaa
                                                                                                                                      Presented at the annual meeting of European Cardiac Simulation Group, Bologna, Italy, 2008
                                                                                                                                    8. Modelling, Mathematical Properties and Validation of the Inverse Ischemia Problem
                                                                                                                                      B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, K. Haugaa, A. Abildgaard, J. G. Fjeld and M. Burger
                                                                                                                                      Presented at the Bidomain Workshop, Graz, Austria, 2009
                                                                                                                                    9. The Inverse Ischemia Problem; Mathematical Models and Validation
                                                                                                                                      B. F. Nielsen, O. M. Lysaker, P. Grøttum, K. Haugaa, J. G. Fjeld and A. Abildgaard
                                                                                                                                      Presented at the Applied Inverse Problems conference, Vienna, Austria, 2009
                                                                                                                                    10. Theoretical and Practical Aspects of the Inverse Ischemia Problem
                                                                                                                                      B. F. Nielsen, O. M. Lysaker and P. Grøttum
                                                                                                                                      Presented at Karlsruhe Institute of Technology, Germany, 2010
                                                                                                                                    11. Computing Ischemic Regions in the Heart: on the Use of Internal Electrodes
                                                                                                                                      O. M. Lysaker, B. F. Nielsen and S. Wall
                                                                                                                                      Computing in Cardiology, 2013
                                                                                                                                    12. Observability of Ischemia and the Need for Patient Specific Geometrical Models in Inverse ECG
                                                                                                                                      G. T. Lines, O. M. Lysaker and B. F. Nielsen
                                                                                                                                      Computing in Cardiology, Zaragoza, Spain, 2013

                                                                                                                                    Alf Emil Løvgren

                                                                                                                                      Articles in International Journals

                                                                                                                                      1. Global C^1 Maps on General Domains
                                                                                                                                        A. E. Løvgren, Y. Maday and E. M. Rønquist
                                                                                                                                        Mathematical Models and Methods in Applied Sciences (M3AS), vol. 19, pp. 803—832, 2009, [DOI]
                                                                                                                                      2. CSF Flow Dynamics at the Cranio-Vertebral Junction Studied With an Idealized Model of the Subarachnoid Space and Computational Flow Analysis
                                                                                                                                        S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                                        American Journal of Neuroradiology, vol. 31, pp. 185—192, 2009
                                                                                                                                      3. Characterization of Cyclical CSF Flow in the Foramen Magnum and Upper Cervical Spinal Canal With MR Flow Imaging and Computational Fluid Dynamics
                                                                                                                                        S. Hentschel, K.-A. Mardal, A. E. Løvgren, S. Linge and V. Haughton
                                                                                                                                        American Journal of Neuroradiology, vol. 31, pp. 997—1002, 2010, [DOI]
                                                                                                                                      4. Effect of Tonsilar Herniation on Cyclic CSF Flow Studied With Computational Flow Analysis
                                                                                                                                        S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland and H. P. Langtangen
                                                                                                                                        American Journal of Neuroradiology, vol. 32, pp. 1474—1481, 2011
                                                                                                                                      5. Stabilized Reduced Basis Approximation of Incompressible Three-Dimensional Navier-Stokes Equations in Parametrized Deformed Domains
                                                                                                                                        S. Deparis and A. E. Løvgren
                                                                                                                                        Journal of Scientific Computing, vol. 50, pp. 198—212, 2012, [DOI]

                                                                                                                                      Chapters in Books

                                                                                                                                      1. The Reduced Basis Element Method for Fluid Flows
                                                                                                                                        A. E. Løvgren, E. M. Rønquist and Y. Maday
                                                                                                                                        in Analysis and Simulation of Fluid Dynamics, Edited by C. Calgaro, J.-F. Coulombel and T. Goudon, Birkhäuser, pp. 129—154, 2007
                                                                                                                                      2. Cerebrospinal Fluid Flow
                                                                                                                                        S. Støle-Hentschel, S. Linge, A. E. Løvgren and K.-A. Mardal
                                                                                                                                        in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 455—470, 2012

                                                                                                                                      Refereed Proceedings

                                                                                                                                      1. Effect of Tonsilar Position on Cerebrospinal Fluid Flow in the Spinal Subarachnoid Space Studied With Computational Fluid Dynamics
                                                                                                                                        S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                        in ASNR - 47th Annual Meeting of the American Society of Neuroradiology, 2009
                                                                                                                                      2. Cyclic Cerebrospinal Fluid Flow (I): Towards the Understanding of Cerebrospinal Fluid Flow Dynamics in Chiari I Malformation
                                                                                                                                        S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland, H. P. Langtangen and K.-H. Støverud
                                                                                                                                        in ASNR 49th Annual Meeting & the Foundation of the ASNR Symposium, June 4 - 9, 2011., 2011

                                                                                                                                      Conference Proceedings

                                                                                                                                      1. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                                                                                        A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                        in 21st Nordic Seminar on Computational Mechanics, 2008

                                                                                                                                      Talks

                                                                                                                                      1. Reduced Basis Modeling of Complex Flow Systems
                                                                                                                                        A. E. Løvgren, E. M. Rønquist and Y. Maday
                                                                                                                                        Invited talk at the Modelling and Scientific Computing group at EPFL, Switzerland, November, 2007. Also presented at the workshop on Modelling and Computation of Biomedical Processes at CBC, Simula, June 7-14, 2007
                                                                                                                                      2. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                                                                                        A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                        Invited talk at the 21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
                                                                                                                                      3. Chiari Malformation - the Problem and a Mathematical Approach
                                                                                                                                        S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                        Invited talk, Vindern Medical Center, 8th of December, Oslo, Norway, 2008
                                                                                                                                      4. Cerebrospinal Fluid Flow in Normal and Chiari Subjects
                                                                                                                                        S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                        talk, Seminar at CBC (Simula Research Laboratory), 16th of December, Oslo, Norway, 2008
                                                                                                                                      5. Cerebrospinal Fluid Flow Simulations - Normal Subjects and Patients With Chiari I Malformation
                                                                                                                                        S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                        talk, Seminar at CBC (Simula Research Laboratory), 31st of October, Oslo, Norway), 2008
                                                                                                                                      6. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
                                                                                                                                        S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                                        talk, Seminar at CBC (Simula Research Laboratory), 25th of June, Oslo, Norway., 2008
                                                                                                                                      7. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
                                                                                                                                        S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                                        talk, Seminar at CBC (Simula Research Laboratory), 20th of May, Oslo, Norway., 2008
                                                                                                                                      8. Patient-Specific Simulations of Stroke and Syringomyelia
                                                                                                                                        K.-A. Mardal, S. Hentschel, A. Helgeland, H. P. Langtangen, S. Linge, A. E. Løvgren, A. Logg and K. Valen-Sendstad
                                                                                                                                        Talk : Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, Nov 03, 2009
                                                                                                                                      9. CSF Flow Modelling
                                                                                                                                        K.-A. Mardal, V. Haughton, S. Hentschel, H. P. Langtangen, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                                                                        Invited talk at CSR Flow Research Conference at University of Wisconsin, Nov 9, 2009
                                                                                                                                      10. Cerebrospinal Fluid Flow Investigations With Modelling and Simulation
                                                                                                                                        S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                        invited talk at The Chiari Institute, 14th of January, New York, U.S.A., 2009
                                                                                                                                      11. Simulating Normal and Abnormal CSF Flow With Idealized Geometries
                                                                                                                                        S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                        talk, seminar on cerebrospinal fluid flow, 16th of January, University of Wisconsin, U.S.A., 2009
                                                                                                                                      12. Real-Time Flow Simulation
                                                                                                                                        A. E. Løvgren, Y. Maday, E. M. Rønquist and S. Deparis
                                                                                                                                        Invited talk at The Chiari Institute, New York, U.S.A., January 14th, 2009
                                                                                                                                      13. Real-Time Computation of CSF Flow
                                                                                                                                        A. E. Løvgren, Y. Maday, E. M. Rønquist and S. Deparis
                                                                                                                                        Invited talk at a seminar for cerebrospinal fluid flow, University of Wisconsin, Madison, U.S.A., January 16th, 2009
                                                                                                                                      14. Tonsilar Herniation - How Is the CSF Flow Influenced?
                                                                                                                                        S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                        Invited talk at Rikshospitalet University Hospital, Oslo, Norway, 5th of June, 2009
                                                                                                                                      15. The Reduced Basis Element Method: Offline-Online Decomposition in the Nonconforming, Nonaffine Case
                                                                                                                                        A. E. Løvgren, Y. Maday and E. M. Rønquist
                                                                                                                                        Invited talk at the reduced basis mini-symposium at ICOSAHOM 09, Trondheim, Norway, June 22-26, 2009
                                                                                                                                      16. The Spectral Element Method Used to Assess the Quality of a Deformed Mesh
                                                                                                                                        A. E. Løvgren, Y. Maday and E. M. Rønquist
                                                                                                                                        contributed talk at ICOSAHOM 09, Trondheim, Norway, June 22-26, 2009
                                                                                                                                      17. Some Biomedical Applications at Simula
                                                                                                                                        K.-A. Mardal, A. Helgeland, S. Hentschel, H. P. Langtangen, A. Logg, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                                                                        Talk at the CBC Workshop on Computational Biology with UMB, 2009
                                                                                                                                      18. Stabilized Reduced Basis Approximation of the Navier-Stokes Equations in Deformed Domains
                                                                                                                                        A. E. Løvgren and S. Deparis
                                                                                                                                        Contributed talk at the workshop on Model Reduction of Parametrized Systems, Münster, Germany, Sept. 16-18, 2009

                                                                                                                                      Mary C. MacLachlan

                                                                                                                                        Articles in International Journals

                                                                                                                                        1. A Comparison of Non-Standard Solvers for ODEs Describing Cellular Reactions in the Heart
                                                                                                                                          M. C. MacLachlan, J. Sundnes and R. J. Spiteri
                                                                                                                                          Computer Methods in Biomechanics and Biomedical Engineering, vol. 10, pp. 317—326, 2007
                                                                                                                                        2. A Linear System of Partial Differential Equations Modeling the Resting Potential of a Heart With Regional Ischemia
                                                                                                                                          M. C. MacLachlan, J. Sundnes, O. Skavhaug, O. M. Lysaker, B. F. Nielsen and A. Tveito
                                                                                                                                          Mathematical Biosciences, vol. 210, pp. 238—252, 2007
                                                                                                                                        3. Synchronizing Computer Simulations With Measurement Data for a Case of Atrial Flutter
                                                                                                                                          G. T. Lines, S. Linge, M. C. MacLachlan and A. Tveito
                                                                                                                                          Annals of Biomedical Engineering, vol. 37, pp. 1287—1293, 2009

                                                                                                                                        Talks

                                                                                                                                        1. Simulation of Atrial Arrhytmias
                                                                                                                                          M. C. MacLachlan
                                                                                                                                          Talk at CBC, Seminar on Electrophysiology Modeling, Simula, 2007

                                                                                                                                        Molly Maleckar

                                                                                                                                          Articles in International Journals

                                                                                                                                          1. Mathematical Simulations of Ligand-Gated and Specific Cell-Type Effects in the Human Atrium
                                                                                                                                            M. Maleckar, J. L. Greenstein, N. A. Trayanova and W. R. Giles
                                                                                                                                            Progress in Biophysics and Molecular Biology, vol. 98, pp. 161—70, 2008
                                                                                                                                          2. Polarity Reversal Lowers Activation Time During Diastolic Field Stimulation of the Rabbit Ventricles: Insight Into Mechanisms
                                                                                                                                            M. Maleckar, M. C. Woods, V. Y. Sidorov, M. R. Holcomb, D. N. Mashburn, J. P. Wikswo and N. A. Trayanova
                                                                                                                                            American Journal of Physiology - Heart and Circulatory Physiology, vol. 295, pp. H1626—H1633, 2008
                                                                                                                                          3. K+ Current Changes Account for the Rate Dependence of the Action Potential in the Human Atrial Myocyte
                                                                                                                                            M. Maleckar, J. L. Greenstein, W. R. Giles and N. A. Trayanova
                                                                                                                                            American Journal of Physiology - Heart and Circulatory Physiology, vol. 297, pp. 1398—1410, 2009
                                                                                                                                          4. Susceptibility to Reentry in the Infarcted Heart Depends on the Active Fibroblast Density
                                                                                                                                            K. McDowell, H. Arevalo, M. Maleckar and N. A. Trayanova
                                                                                                                                            Biophysical Journal, vol. 110, pp. 1307—15, 2011
                                                                                                                                          5. Existence of Excitation Waves for a Collection of Cardiomyocytes Electrically Coupled to Fibroblasts
                                                                                                                                            A. Tveito, G. T. Lines, R. Artebrant, O. Skavhaug and M. Maleckar
                                                                                                                                            Mathematical Biosciences, vol. 230, pp. 79—86, 2011, [DOI]
                                                                                                                                          6. Unstable Eigenmodes As Possible Drivers for Cardiac Arrhythmias
                                                                                                                                            A. Tveito, G. T. Lines, O. Skavhaug and M. Maleckar
                                                                                                                                            Journal of the Royal Society Interface, vol. 8, pp. 1212—6, 2011
                                                                                                                                          7. N-Version Benchmark Evaluation of Cardiac Tissue Electrophysiology Simulators
                                                                                                                                            S. A. Niederer, E. Kerfoot, A. Benson, M. Bernabeu, O. Bernus, E. Cherry, R. Clayton, F. Fenton, A. Garny, E. Heidenreich, S. Land, M. Maleckar, P. Pathmanathan, G. Plank, J. Rodriguez, I. Roy, F. Sachse, G. Seemann, O. Skavhaug and N. P. Smith
                                                                                                                                            Philosophical Transactions of the Royal Society A, vol. 369, pp. 4331—51, 2011, [DOI]
                                                                                                                                          8. A Note on a Possible Pro-Arrhythmic Property of Anti-Arrhythmic Drugs Aimed at Improving Gap-Junction Coupling
                                                                                                                                            A. Tveito, G. T. Lines and M. Maleckar
                                                                                                                                            Biophysical Journal, vol. 102, pp. 231—237, 2012
                                                                                                                                          9. An Analysis of the Shock Strength Needed to Achieve Defibrillation in a Simplified Mathematical Model of Cardiac Tissue
                                                                                                                                            A. Tveito, G. T. Lines, M. E. Rognes and M. Maleckar
                                                                                                                                            International Journal of Numerical Analysis and Modeling, vol. 9, pp. 644—657, 2012
                                                                                                                                          10. Slow Calcium-Depolarization-Calcium Waves May Initiate Fast Local Depolarization Waves in Ventricular Tissue
                                                                                                                                            A. Tveito, G. T. Lines, A. Edwards, M. Maleckar, A. P. Michailova, J. E. Hake and A. D. McCulloch
                                                                                                                                            Progress in Biophysics and Molecular Biology, vol. 110, pp. 295—304, 2012
                                                                                                                                          11. Ca(2+) Entry Through TRP-C Channels Regulates Fibroblast Biology in Chronic Atrial Fibrillation
                                                                                                                                            R. A. Rose, D. Belke, M. Maleckar and W. R. Giles
                                                                                                                                            Circulation, vol. 126, pp. 2039—2041, 2012
                                                                                                                                          12. Mathematical Models of Cardiac Pacemaking Function
                                                                                                                                            P. Li, G. T. Lines, M. Maleckar and A. Tveito
                                                                                                                                            Frontiers in Physics, vol. 1, 2013, [DOI]
                                                                                                                                          13. Benchmarking Electrophysiological Models of Human Atrial Myocytes
                                                                                                                                            M. Wilhelms, H. Hettmann, M. Maleckar, J. Koivumäki, O. Dössel and G. Seemann
                                                                                                                                            Frontiers in Computational Physiology and Medicine, vol. 3, 2013
                                                                                                                                          14. NS5806 Partially Restores Action Potential Duration But Fails to Ameliorate Calcium Transient Dysfunction in a Computational Model of Canine Heart Failure
                                                                                                                                            M. Maleckar, G. T. Lines, J. Koivumäki, J. M. Cordeiro and K. Calloe
                                                                                                                                            Europace, vol. 16, pp. iv46—iv55, 2014
                                                                                                                                          15. Variable T-Tubule Organization and Ca2+ Homeostasis Across the Atria
                                                                                                                                            M. Frisk, J. Koivumäki, P. A. Norseng, M. Maleckar, O. M. Sejersted and W. E. Louch
                                                                                                                                            Heart and Circulatory Physiology, vol. 307, pp. H609—H620, 2014
                                                                                                                                          16. In Silico Screening of the Key Cellular Remodeling Targets in Chronic Atrial Fibrillation
                                                                                                                                            J. Koivumäki, G. Seemann, M. Maleckar and P. Tavi
                                                                                                                                            PLoS Computational Biology, vol. 10(5), 2014
                                                                                                                                          17. Investigations of the NaVβ1b Sodium Channel Subunit in Human Ventricle; Functional Characterization of the H162P Brugada Syndrome Mutant
                                                                                                                                            L. Yuan, J. Koivumäki, B. Liang, L. G. Lorentzen, J. H. Svendsen, J. Tfelt-Hansen, M. Maleckar, N. Schmitt, M. S. Olesen and T. Jespersen
                                                                                                                                            Heart and Circulatory Physiology, vol. 306, pp. H1204—H1212, 2014
                                                                                                                                          18. Na+ Current Expression in Human Atrial Myofibroblasts: Its Identity and Functional Consequences
                                                                                                                                            J. Koivumäki, R. Clark, D. Belke, C. Kondo, P. Fedak, M. Maleckar and W. R. Giles
                                                                                                                                            Frontiers in Physiology, vol. 5, pp. 275, 2014
                                                                                                                                          19. Simple T wave metrics may better predict early ischemia as compared to ST segment
                                                                                                                                            G. T. Lines, B. L. de Oliveira, O. Skavhaug and M. Maleckar
                                                                                                                                            IEEE Transactions on Biomedical Engineering, 2016, [DOI]
                                                                                                                                          20. cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology
                                                                                                                                            M. E. Rognes, P. E. Farrell, S. W. Funke, J. E. Hake and M. Maleckar
                                                                                                                                            Journal of Open Source Software, 2017, [DOI]
                                                                                                                                          21. Adjoint-based estimation of cardiac activation times
                                                                                                                                            S. Kallhovd, M. Maleckar and M. E. Rognes
                                                                                                                                            International Journal for Numerical Methods in Biomedical Engineering, 2017

                                                                                                                                          Refereed Proceedings

                                                                                                                                          1. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythmogenic cardiomyopathy
                                                                                                                                            S. Kallhovd, S. U. Gjerald, O. Maennel, J. Saberniak, K. Haugaa and M. Maleckar
                                                                                                                                            in E-Health and Bioengineering Conference (EHB), 2015
                                                                                                                                          2. From MR image to patient-specific simulation and population-based analysis:Tutorial for an openly available image-processing pipeline
                                                                                                                                            M. Marciniak, H. Arevalo, J. Tfelt-Hansen, T. Jespersen, R. Jabbari, C. Glinge, K. A. Ahtarovski, N. Vejlstrup, M. Maleckar and K. S. Mcleod
                                                                                                                                            in MICCAI Workshop on Statistical Atlases and Cardiac Models of the Heart, 2016
                                                                                                                                          3. A multiple kernel learning framework to investigate the relationship between ventricular fibrillation and first myocardial infarction
                                                                                                                                            M. Marciniak, H. Arevalo, J. Tfelt-Hansen, K. A. Ahtarovski, T. Jespersen, R. Jabbari, C. Glinge, N. Vejlstrup, T. Engstrom, M. Maleckar and K. S. Mcleod
                                                                                                                                            in Functional Imaging and Modelling of the Heart, 2017

                                                                                                                                          Talks

                                                                                                                                          1. Coupling of Human Atrial Myocytes and Myofibroblasts Can Lead to Conduction Disturbances
                                                                                                                                            M. Maleckar, J. L. Greenstein, W. R. Giles and N. A. Trayanova
                                                                                                                                            HRS Scientific Sessions 2008, 2008
                                                                                                                                          2. Electrotonic Coupling Between Human Atrial Myocytes and Fibroblasts Alters Excitability and Repolarization
                                                                                                                                            M. Maleckar
                                                                                                                                            GRC Conference 2009 - Cardiac Arrhythmia Mechanisms, 2009
                                                                                                                                          3. Right Through the Heart: Perspectives and Problems
                                                                                                                                            M. Maleckar
                                                                                                                                            CBC Workshop, Right Through the Heart: Snapshots of Current and Future Research in Cardiac Modeling, 2010
                                                                                                                                          4. Divergent Action Potential Morphology in Human Atrial Cells Vs. Tissue: Underlying Ionic Mechanisms
                                                                                                                                            J. Koivumäki, T. Christ, G. Seemann and M. Maleckar
                                                                                                                                            Computing in Cardiology conference, 2012
                                                                                                                                          5. Calcium Buffering in Human Atrial Myocytes
                                                                                                                                            J. Koivumäki, M. Maleckar, T. Christ and N. Rozmaritsa
                                                                                                                                            CaMo-UCSD Workshop, San Diego, USA, 2012
                                                                                                                                          6. Towards Modeling Arrhythmogenic Cardiomyopathy - Can Simulation Shed Light on a Complex Disease Process?
                                                                                                                                            M. Maleckar
                                                                                                                                            ardiac Physiome Workshop, San Diego, 2012
                                                                                                                                          7. Action Potential Repolarisation in Healthy and Fibrillating Human Atria: Contribution of Small Conductance Calcium-Activated Potassium Channels
                                                                                                                                            J. Koivumäki, L. Skibsbye, T. Christ, M. Maleckar and T. Jespersen
                                                                                                                                            Conference of the Scandinavian Physiological Society, 2014
                                                                                                                                          8. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythomogenic cardiomyopathy
                                                                                                                                            S. Kallhovd, V. Mezzano, S. U. Gjerald, J. Saberniak, F. Sheikh, H. Haugaa and M. Maleckar
                                                                                                                                            VPH 2014, Trondheim, Norway, 2014
                                                                                                                                          9. Electrophysiology and advanced simulation techniques focused on atrial fibrillation
                                                                                                                                            M. Maleckar
                                                                                                                                            Annual Meeting of the Scandinavian Physiological Society, 2014
                                                                                                                                          10. How many ionic models do we need for modelling of the atria?
                                                                                                                                            M. Maleckar
                                                                                                                                            Atrial Signals 2015, 2015
                                                                                                                                          11. Putting the pieces together: towards supplementing sparse clinical data with multi physics simulation
                                                                                                                                            M. Maleckar
                                                                                                                                            Foundation Teofilo Rossi di Montelera Forum 2015, 2015

                                                                                                                                          Posters

                                                                                                                                          1. Effects of Fibroblast-Myocyte Coupling in the Infarcted Rabbit Heart
                                                                                                                                            K. McDowell, H. Arevalo, M. Maleckar, B. RC, P. G. and N. A. Trayanova
                                                                                                                                            Heart Rhythm, 2009
                                                                                                                                          2. Divergent Action Potential Morphology in Human Atrial Cells Vs. Tissue: Underlying Ionic Mechanisms
                                                                                                                                            J. Koivumäki, T. Christ, G. Seemann and M. Maleckar
                                                                                                                                            2012
                                                                                                                                          3. NS5806 Partially Restores APD But Fails to Ameliorate Ca2+ Transient Dysfunction in a Computational Model of Canine Heart Failure
                                                                                                                                            M. Maleckar, G. T. Lines, J. Koivumäki, K. Calloe and J. Cordeiro
                                                                                                                                            Europace 2014, 2013
                                                                                                                                          4. Ca2+-Transient Dysfunction and Ion Channel Therapy: What Can We Gather From a Computational Model of Canine Heart Failure?
                                                                                                                                            M. Maleckar, G. T. Lines and J. Koivumäki
                                                                                                                                            , 2013
                                                                                                                                          5. Mechanisms Promoting Chronic Atrial Fibrillation: Role of Remodelled Intracellular Calcium Handling and Cellular Hypertrophy
                                                                                                                                            J. Koivumäki, M. Maleckar and P. Tavi
                                                                                                                                            2013
                                                                                                                                          6. The Controversial Late INa in Human Atrial Myocytes: a Computational Analysis of Ranolazine's Effects
                                                                                                                                            J. Koivumäki, T. Christ, U. Ravens and M. Maleckar
                                                                                                                                            2013
                                                                                                                                          7. Action Potential Repolarisation in Healthy and Fibrillating Human Atria: Contribution of Small Conductance Calcium-Activated Potassium Channels
                                                                                                                                            J. Koivumäki, L. Skibsbye, T. Christ, M. Maleckar and T. Jespersen
                                                                                                                                            2014
                                                                                                                                          8. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythomogenic cardiomyopathy
                                                                                                                                            S. Kallhovd, V. Mezzano, S. U. Gjerald, J. Saberniak, F. Sheikh, H. Haugaa and M. Maleckar
                                                                                                                                            Biophysical Society 58th Annual Meeting, 2014
                                                                                                                                          9. Localization and not extent of fibrofatty infiltration is the primary factor determining conduction disturbance in a computational model of arrhythomogenic cardiomyopathy
                                                                                                                                            S. Kallhovd, V. Mezzano, S. U. Gjerald, J. Saberniak, F. Sheikh, H. Haugaa and M. Maleckar
                                                                                                                                            Copenhagen Meeting on Cardiac Arrhythmia, May 19-22, 2014, 2014
                                                                                                                                          10. A data-driven framework uncovers arrhythmogenic mechanisms in a 'functionally calibrated' population of models
                                                                                                                                            M. Vagos, H. Arevalo, F. Sacco and M. Maleckar
                                                                                                                                            2017

                                                                                                                                          Kent-Andre Mardal

                                                                                                                                            Articles in International Journals

                                                                                                                                            1. An Order Optimal Solver for the Discretized Bidomain Equations
                                                                                                                                              K.-A. Mardal, B. F. Nielsen, X. Cai and A. Tveito
                                                                                                                                              Numerical Linear Algebra with Applications, vol. 14, pp. 83—98, 2007
                                                                                                                                            2. Order Optimal Preconditioners for Implicit Runge-Kutta Schemes Applied to Parabolic PDE's
                                                                                                                                              K.-A. Mardal, T. K. Nilssen and G. A. Staff
                                                                                                                                              SIAM Journal on Scientific Computing, vol. 29, pp. 361—375, 2007
                                                                                                                                            3. Using Python to Solve Partial Differential Equations
                                                                                                                                              K.-A. Mardal, O. Skavhaug, G. T. Lines, G. A. Staff and Å. Ødegård
                                                                                                                                              Computing in Science & Engineering, vol. 9, pp. 48—51, 2007
                                                                                                                                            4. Computation of Hemodynamics in the Circle of Willis
                                                                                                                                              M. S. Alnæs, J. G. Isaksen, K.-A. Mardal, B. Romner, M. K. Morgan and T. Ingebrigtsen
                                                                                                                                              Stroke, vol. 38, pp. 2500—2505, 2007
                                                                                                                                            5. Unified Finite Element Discretizations of Coupled Darcy-Stokes Flow
                                                                                                                                              T. K. Karper, K.-A. Mardal and R. Winther
                                                                                                                                              Numerical Methods for Partial Differential Equations, vol. 25, pp. 311—326, 2009
                                                                                                                                            6. Unified Framework for Finite Element Assembly
                                                                                                                                              M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
                                                                                                                                              International Journal of Computational Science and Engineering, vol. 4, pp. 231—244, 2009
                                                                                                                                            7. CSF Flow Dynamics at the Cranio-Vertebral Junction Studied With an Idealized Model of the Subarachnoid Space and Computational Flow Analysis
                                                                                                                                              S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                                              American Journal of Neuroradiology, vol. 31, pp. 185—192, 2009
                                                                                                                                            8. Stability Analysis of the Inverse Transmembrane Potential Problem in Electrocardiography
                                                                                                                                              M. Burger, K.-A. Mardal and B. F. Nielsen
                                                                                                                                              Inverse Problems, vol. 26, 2010, [DOI]
                                                                                                                                            9. Sex Differences in Intracranial Arterial Bifurcations
                                                                                                                                              H. Lindekle, K. Valen-Sendstad, M. K. Morgan, K.-A. Mardal, K. Faulder, J. Magnus, K. Waterloo, B. Romner and T. Ingebrigtsen
                                                                                                                                              Gender Medicine, vol. 7, 2010
                                                                                                                                            10. Efficient Preconditioners for Optimality Systems Arising in Connection With Inverse Problems
                                                                                                                                              B. F. Nielsen and K.-A. Mardal
                                                                                                                                              SIAM Journal on Control and Optimization, vol. 48, 2010, [DOI]
                                                                                                                                            11. On the Efficiency of Symbolic Computations Combined With Code Generation for Finite Element Methods
                                                                                                                                              M. S. Alnæs and K.-A. Mardal
                                                                                                                                              ACM Transactions on Mathematical Software, vol. 37, 2010
                                                                                                                                            12. Characterization of Cyclical CSF Flow in the Foramen Magnum and Upper Cervical Spinal Canal With MR Flow Imaging and Computational Fluid Dynamics
                                                                                                                                              S. Hentschel, K.-A. Mardal, A. E. Løvgren, S. Linge and V. Haughton
                                                                                                                                              American Journal of Neuroradiology, vol. 31, pp. 997—1002, 2010, [DOI]
                                                                                                                                            13. Effect of Tonsilar Herniation on Cyclic CSF Flow Studied With Computational Flow Analysis
                                                                                                                                              S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland and H. P. Langtangen
                                                                                                                                              American Journal of Neuroradiology, vol. 32, pp. 1474—1481, 2011
                                                                                                                                            14. Flow Characteristics in a Canine Aneurysm Model: A Comparison of 4-D Accelerated Phase-Contrast MR Measurements and Computational Fluid Dynamics Simulations
                                                                                                                                              J. Jiang, K. Johnson, K. Valen-Sendstad, K.-A. Mardal, O. Wieben and C. Strother
                                                                                                                                              Medical Physics, vol. 38, pp. 6300—6313, 2011
                                                                                                                                            15. CSF Flow in Chiari I and Syringomyelia From the Perspective of Computational Fluid Dynamics
                                                                                                                                              K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              The Neuroradiology Journal, vol. 24, pp. 20—23, 2011
                                                                                                                                            16. Direct Numerical Simulation of Transitional Flow in a Patient-Specific Intracranial Aneurysm
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                              Journal of Biomechanics, vol. 44, pp. 2826—2832, 2011, [DOI]
                                                                                                                                            17. Order Optimal Preconditioners for Fully Implicit Runge-Kutta Schemes Applied to the Bidomain Equations
                                                                                                                                              T. K. Nilssen, G. A. Staff and K.-A. Mardal
                                                                                                                                              Numerical Methods for Partial Differential Equations, vol. 27, pp. 1290—1312, 2011, [DOI]
                                                                                                                                            18. Preconditioning Discretizations of Systems of Partial Differential Equations
                                                                                                                                              K.-A. Mardal and R. Winther
                                                                                                                                              Numerical Linear Algebra with Applications, vol. 18, pp. 1—40, 2011, [DOI]
                                                                                                                                            19. Patient-Specific 3D Simulation of Cyclic CSF Flow at the Cranio-Cervical Region
                                                                                                                                              G. Rutkowska, V. Haughton, S. Linge and K.-A. Mardal
                                                                                                                                              American Journal of Neuroradiology, vol. 33, pp. 1756—1762, 2012
                                                                                                                                            20. Estimation of CSF Flow Resistance in the Upper Cervical Spine
                                                                                                                                              K.-A. Mardal, G. Rutkowska, S. Linge and V. Haughton
                                                                                                                                              The Neuroradiology Journal, vol. 3, pp. 49—53, 2013
                                                                                                                                            21. Simulating CSF Flow Dynamics in the Normal and the Chiari I Subarachnoid Space During Rest and Exertion
                                                                                                                                              S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
                                                                                                                                              American Journal of Neuroradiology, vol. 34, pp. 41—15, 2013
                                                                                                                                            22. Analysis of the Minimal Residual Method Applied to Ill-Posed Optimality Systems
                                                                                                                                              B. F. Nielsen and K.-A. Mardal
                                                                                                                                              SIAM Journal on Scientific Computing, vol. 35, pp. A785—A814, 2013
                                                                                                                                            23. A Uniformly Stable Fortin Operator for the Taylor-Hood Element
                                                                                                                                              K.-A. Mardal, J. Schoberl and R. Winther
                                                                                                                                              Numerische Mathematik, vol. 123, pp. 537—551, 2013, [DOI]
                                                                                                                                            24. Effect of the Central Canal in the Spinal Cord on Fluid Movement Within the Cord
                                                                                                                                              I. N. Drøsdal, K.-A. Mardal, K.-H. Støverud and V. Haughton
                                                                                                                                              The Neuroradiology Journal, vol. 26, pp. 585—590, 2013
                                                                                                                                            25. A Study of Wall Shear Stress in 12 Aneurysms With Respect to Different Viscosity Models and Flow Conditions
                                                                                                                                              Ø. Evju, K. Valen-Sendstad and K.-A. Mardal
                                                                                                                                              Journal of Biomechanics, vol. 46, pp. 2802—2808, 2013
                                                                                                                                            26. High-Resolution Computational Fluid Dynamics Detects High-Frequency Velocity Fluctuations in Bifurcation, But Not Sidewall, Aneurysms of the Middle Cerebral Artery
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal and D. A. Steinman
                                                                                                                                              Journal of Biomechanics, vol. 46, pp. 402—407, 2013
                                                                                                                                            27. Spinal Fluid Biomechanics and Imaging: an Update for Neuroradiologists
                                                                                                                                              V. Haughton and K.-A. Mardal
                                                                                                                                              American Journal of Neuroradiology, vol. 35, pp. 1864—1869, 2014, [DOI]
                                                                                                                                            28. Effect of Cranio-Vertebral Decompression on CSF Dynamics in Chiari I Malformation Studied With Computational Fluid Dynamics
                                                                                                                                              S. Linge, K.-A. Mardal, A. Helgeland, J. Heiss and V. Haughton
                                                                                                                                              Journal of Neurosurgery, vol. 21, pp. 559—564, 2014
                                                                                                                                            29. Numerical Simulations of the Pulsating Flow of Cerebrospinal Fluid Flow in the Cervical Spinal Canal of a Chiari Patient
                                                                                                                                              A. Helgeland, K.-A. Mardal, V. Haughton and B. A. P. Reif
                                                                                                                                              Journal of Biomechanics, vol. 47, pp. 1082—90, 2014
                                                                                                                                            30. A Multilevel Solver for Gaussian Constrained CMB Realizations
                                                                                                                                              D. S. Seljebotn, K.-A. Mardal, J. Jewell, H. K. Eriksen and P. Bull
                                                                                                                                              The Astrophysical Journal Supplement Series, vol. 210, 2014
                                                                                                                                            31. Computational fluid dynamics evaluation of flow reversal treatment of giant basilar tip aneurysm
                                                                                                                                              M. S. Alnæs, K.-A. Mardal, S. J. Bakke and A. Sorteberg
                                                                                                                                              Interventional Neuroradiology, vol. 21, pp. 586—591, 2015, [DOI]
                                                                                                                                            32. Poro-elastic modeling of Syringomyelia – a systematic study of the effects of pia mater, central canal, median fissure, white and gray matter on pressure wave propagation and fluid movement within the cervical spinal cord
                                                                                                                                              K.-H. Støverud, M. S. Alnæs, H. P. Langtangen, V. Haughton and K.-A. Mardal
                                                                                                                                              Computer Methods in Biomechanics and Biomedical Engineering, vol. 19, pp. 686—698, 2015, [DOI]
                                                                                                                                            33. Preconditioners for saddle point systems with trace constraints coupling 2D and 1D domains
                                                                                                                                              M. Kuchta, M. Nordaas, J. C. G. Verschaeve, M. Mortensen and K.-A. Mardal
                                                                                                                                              SIAM Journal of Scientific Computing, vol. 38, 2016
                                                                                                                                            34. Computational Investigation of Cerebrospinal Fluid Dynamics in the Posterior Cranial Fossa and Cervical Subarachnoid Space in Patients with Chiari I Malformation
                                                                                                                                              K.-H. Støverud, H. P. Langtangen, G. A. Ringstad, P. K. Eide and K.-A. Mardal
                                                                                                                                              PLOS ONE, 2016
                                                                                                                                            35. Robust preconditioners for PDE-constrained optimization with limited observations
                                                                                                                                              K.-A. Mardal, B. F. Nielsen and M. Nordaas
                                                                                                                                              BIT Numerical Mathematics, 2016
                                                                                                                                            36. Direct numerical simulations of transitional hydrodynamics of the cerebrospinal fluid in Chiari I malformation – the role of cranio-vertebral junction
                                                                                                                                              K. Jain, G. Ringstad, P.-K. Eide and K.-A. Mardal
                                                                                                                                              International Journal for Numerical Methods in Biomedical Engineering, 2016
                                                                                                                                            37. Robustness of common hemodynamics indicators with respect to numerical resolution in 38 middle cerebral artery aneurysms
                                                                                                                                              Ø. Evju, J. M. Pozo, A. Frangi and K.-A. Mardal
                                                                                                                                              Accepted for publication in PLOS ONE, 2016
                                                                                                                                            38. Transitional hemodynamics in intracranial aneurysms - Comparative velocity investigations with high resolution Lattice Boltzmann simulations, normal resolution ANSYS simulations and MR imaging
                                                                                                                                              K. Jain, J. Jiang, C. Strother and K.-A. Mardal
                                                                                                                                              Medical Physics, vol. 43, 2016
                                                                                                                                            39. Association of pulse pressure gradient across cranio-cervical junction as derived from phase-contrast magnetic resonance imaging and invasively measured pulsatile intracranial pressure in symptomatic patients with Chiari malformation type 1
                                                                                                                                              R. Fric, E. K. Lindstrøm, G. Ringstad, K.-A. Mardal and P. K. Eide
                                                                                                                                              Acta Neurochirurgica, vol. 158, 2016
                                                                                                                                            40. Parameter-robust discretization and preconditioning of Biot's consolidation model
                                                                                                                                              J. Lee, K.-A. Mardal and R. Winther
                                                                                                                                              SIAM Journal of Scientific Computing, 2017
                                                                                                                                            41. A numerical investigation of intrathecal drug and gene vector dispersion within the cervical subarachnoid space
                                                                                                                                              P. T. Haga, G. Pizzichelli, M. Mortensen, M. Kuchta, S. H. Pahlavian, E. Sinibaldi, B. A. Martin and K.-A. Mardal
                                                                                                                                              Plos One, 2017, [DOI]
                                                                                                                                            42. Variational data assimilation for transient blood flow simulations
                                                                                                                                              S. W. Funke, M. Nordaas, Ø. Evju, M. S. Alnæs and K.-A. Mardal
                                                                                                                                              Accepted for publication in International Journal for Numerical Methods in Biomedical Engineering, 2017
                                                                                                                                            43. Interstitial Solute Transport in 3D Reconstructed Neuropil Occurs by Diffusion Rather than Bulk Flow
                                                                                                                                              K. E. Holter, B. Kehlet, A. Devor, T. J. Sejnowski, A. M. Dale, S. W. Omholt, O. P. Ottesen, E. A. Nagelhus, K.-A. Mardal and K. H. Pettersen
                                                                                                                                              PNAS, 2017
                                                                                                                                            44. Robustness of common hemodynamic indicators with respect to numerical resolution in 38 middle cerebral artery aneurysms.
                                                                                                                                              Ø. Evju, J. M. Pozo, A. Frangi and K.-A. Mardal
                                                                                                                                              PloS one, 2017

                                                                                                                                            Edited Books

                                                                                                                                            1. Automated Solution of Differential Equations by the Finite Element Method
                                                                                                                                              A. Logg, K.-A. Mardal and G. N. Wells
                                                                                                                                              Springer, 2012
                                                                                                                                            2. Proceedings of the 26th Nordic Seminar on Computational Machanics
                                                                                                                                              A. Logg, K.-A. Mardal and A. Massing
                                                                                                                                              Simula Research Laboratory, 2013

                                                                                                                                            Chapters in Books

                                                                                                                                            1. A Hybrid Approach to Efficient Finite Element Code Development
                                                                                                                                              A. Logg, K.-A. Mardal, M. S. Alnæs, H. P. Langtangen and O. Skavhaug
                                                                                                                                              in Petascale Computing - Algorithms and Applications, Edited by D. A. Bader, Chapman and Hall, 2007
                                                                                                                                            2. Can ECG Recordings and Mathematics Tell the Condition of Your Heart?
                                                                                                                                              B. F. Nielsen, O. M. Lysaker, P. Grøttum, K.-A. Mardal, A. Tveito, C. Tarrou, K. Haugaa, A. Abildgaard and J. G. Fjeld
                                                                                                                                              in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 287—319, 2009
                                                                                                                                            3. Construction of Preconditioners by Mapping Properties for Systems of Partial Differential Equations
                                                                                                                                              K.-A. Mardal and R. Winther
                                                                                                                                              in Efficient preconditioning methods for elliptic partial differential equations, Edited by O. Axelsson and J. Karatson, Bentham Science Publishers, pp. 65—84, 2011
                                                                                                                                            4. Constructing General Reference Finite Elements
                                                                                                                                              R. C. Kirby and K.-A. Mardal
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 117—128, 2012
                                                                                                                                            5. Instant: Just-in-Time Compilation of C/C++ in Python
                                                                                                                                              I. Wilbers, K.-A. Mardal and M. S. Alnæs
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 253—268, 2012
                                                                                                                                            6. UFC: a Finite Element Code Generation Interface
                                                                                                                                              M. S. Alnæs, A. Logg and K.-A. Mardal
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 279—298, 2012
                                                                                                                                            7. Cerebrospinal Fluid Flow
                                                                                                                                              S. Støle-Hentschel, S. Linge, A. E. Løvgren and K.-A. Mardal
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 455—470, 2012
                                                                                                                                            8. Lessons Learned in Mixed Language Programming
                                                                                                                                              J. E. Hake and K.-A. Mardal
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 363—381, 2012
                                                                                                                                            9. Finite Element Assembly
                                                                                                                                              A. Logg, K.-A. Mardal and G. N. Wells
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 137—142, 2012
                                                                                                                                            10. SyFi and SFC: Symbolic Finite Elements and Form Compilation
                                                                                                                                              M. S. Alnæs and K.-A. Mardal
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 269—278, 2012
                                                                                                                                            11. Simulation of Transitional Flows
                                                                                                                                              M. Mortensen, K.-A. Mardal and H. P. Langtangen
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 419—438, 2012
                                                                                                                                            12. A Comparison of Some Common Finite Element Schemes for the Incompressible Navier-Stokes Equations
                                                                                                                                              K. Valen-Sendstad, A. Logg, K.-A. Mardal, H. Narayanan and M. Mortensen
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 395—418, 2012
                                                                                                                                            13. Computational Hemodynamics
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal and A. Logg
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 439—454, 2012
                                                                                                                                            14. Block Preconditioning of Systems of PDEs
                                                                                                                                              K.-A. Mardal and J. B. Haga
                                                                                                                                              in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 643—654, 2012
                                                                                                                                            15. Escaping the Zombie Threat by Mathematics
                                                                                                                                              H. P. Langtangen, K.-A. Mardal and P. Røtnes
                                                                                                                                              in Zombies in the Academy: Living Death in Higher Education, University of Chicago Press, 2013
                                                                                                                                            16. On the Assumption of Laminar Flow in Physiological Flows: Cerebral Aneurysms As an Illustrative Example
                                                                                                                                              Ø. Evju and K.-A. Mardal
                                                                                                                                              in Modeling the Heart and the Circulatory System, Edited by A. Quarteroni, Springer International Publishing, pp. 177—195, 2015
                                                                                                                                            17. Cerebrospinal fluid flow in adults.
                                                                                                                                              W. Bradley, V. Haughton and K.-A. Mardal
                                                                                                                                              in Handbook of clinical neurology, Edited by J. C. Masdeu and G. Gonzalez, Elsevier, pp. 591—603, 2016

                                                                                                                                            Refereed Proceedings

                                                                                                                                            1. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
                                                                                                                                              M. S. Alnæs, K.-A. Mardal and J. Sundnes
                                                                                                                                              in Fourth national conference on Computational Mechanics (MekIT'07), 2007
                                                                                                                                            2. Implementing a K-E Turbulence Model in the FEniCS Finite Element Programming Environment
                                                                                                                                              K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
                                                                                                                                              in MekIT'09.  Fifth  national  conference  on  Computational  Mechanics, 2009
                                                                                                                                            3. Effect of Tonsilar Position on Cerebrospinal Fluid Flow in the Spinal Subarachnoid Space Studied With Computational Fluid Dynamics
                                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              in ASNR - 47th Annual Meeting of the American Society of Neuroradiology, 2009
                                                                                                                                            4. Porous and Viscous Flow Modeling on the Study of Cyst Development in the Human Spinal Cord
                                                                                                                                              I. N. Drøsdal, V. Haughton, K.-A. Mardal and K.-H. Støverud
                                                                                                                                              in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                                                                            5. Cerebrospinal Fluid Flow Characteristics at Double Heart Rate
                                                                                                                                              S. Linge, K.-A. Mardal, V. Haughton and A. Helgeland
                                                                                                                                              in Neuroradiology, 53 (Suppl. 1), S33, 35th European Soc of Neuroradiology ann. meeting, Antwerpen, Belgium, 2011
                                                                                                                                            6. On the Complexity of Stationary Flow in Patient-Specific Aneurysms
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                              in MekIT'11 Sixth national conference on Computational Mechanics, 2011
                                                                                                                                            7. Investigations of Transistional Flows Using Image Based Hemodynamics
                                                                                                                                              K. Valen-Sendstad, M. Mortensen, K.-A. Mardal, B. A. P. Reif and H. P. Langtangen
                                                                                                                                              in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                                                                            8. The Effect of Varying Cross-Sectional Areas on Cerebrospinal Fluid Flow and Pressure in the Cervical Spine
                                                                                                                                              K.-H. Støverud, K.-A. Mardal, H. P. Langtangen and V. Haughton
                                                                                                                                              in MekIT'11. Sixth national conference on Computational Mechanics, 2011
                                                                                                                                            9. Cyclic Cerebrospinal Fluid Flow (I): Towards the Understanding of Cerebrospinal Fluid Flow Dynamics in Chiari I Malformation
                                                                                                                                              S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland, H. P. Langtangen and K.-H. Støverud
                                                                                                                                              in ASNR 49th Annual Meeting & the Foundation of the ASNR Symposium, June 4 - 9, 2011., 2011
                                                                                                                                            10. Effect of Oscillatory Cerebrospinal Fluid Pressure on Fluid Movement in the Spinal Cord
                                                                                                                                              K.-H. Støverud, K.-A. Mardal and H. P. Langtangen
                                                                                                                                              in Seventh National Conference on Computational Mechanics (MekIT'13), 2013
                                                                                                                                            11. Preliminary Study of the Impact of Spinal Cord Nerve Roots and Denticulate Ligaments on Drug Movement in the Cervical Spinal Subarachnoid Space
                                                                                                                                              M. Mortensen, K.-A. Mardal, B. Martin and S. Pahlavian
                                                                                                                                              in The Nordic Seminar on Computational Mechanics, 2013
                                                                                                                                            12. Characterization of the space of rigid motions in arbitrary domains
                                                                                                                                              M. Kuchta, K.-A. Mardal and M. Mortensen
                                                                                                                                              in MekIT'15 8th National Conference on Computational Mechanics, 2015
                                                                                                                                            13. BEND|P|Y: Python framework for computing bending of complex plate-beam systems
                                                                                                                                              M. Mortensen, M. Kuchta, K.-A. Mardal and J. Verschaeve
                                                                                                                                              in MekIT'15 8th National Conference on Computational Mechanics, 2015
                                                                                                                                            14. Exploring The Critical Reynolds Number For Transition In Intracranial Aneurysms–highly Resolved Simulations Below Kolmogorov Scales
                                                                                                                                              K. Jain and K.-A. Mardal
                                                                                                                                              in 4th International Conference on Computational and Mathematical Biomedical Engineering - CMBE2015, 2015

                                                                                                                                            Conference Proceedings

                                                                                                                                            1. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                                                                                              A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              in 21st Nordic Seminar on Computational Mechanics, 2008
                                                                                                                                            2. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
                                                                                                                                              O. C. Myklebust, S. Hentschel and K.-A. Mardal
                                                                                                                                              in 21st Nordic Seminar on Computational Mechanics, 2008
                                                                                                                                            3. CSF Flow in Chiari I and Syringomyelia - From the Perspective of Fluid Dynamics
                                                                                                                                              K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              in Proceedings of the XIX Symposium Neuroradiologicum, Bologna, Italy, 2010

                                                                                                                                            Technical Reports

                                                                                                                                            1. A Uniform Inf-Sup Condition With Applications to Preconditioning
                                                                                                                                              K.-A. Mardal, J. Schoberl and R. Winther
                                                                                                                                              Simula, 2012
                                                                                                                                            2. A Multilevel Solver for Gaussian Constrained CMB Realizations
                                                                                                                                              D. S. Seljebotn, K.-A. Mardal, J. Jewell, H. K. Eriksen and P. Bull
                                                                                                                                              2013

                                                                                                                                            Manuals

                                                                                                                                            1. UFC Specification and User Manual 1.0
                                                                                                                                              M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
                                                                                                                                              2007
                                                                                                                                            2. Combining FEniCS With Your Favorite Software in C, C++, Fortran, Or MATLAB
                                                                                                                                              K.-A. Mardal and H. P. Langtangen
                                                                                                                                              2013

                                                                                                                                            Talks

                                                                                                                                            1. Computation of Hemodynamics in the Circle of Willis
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Talk at Workshop: Modelling and Computation of Biomedical Processes - June 7-14, 2007, 2007
                                                                                                                                            2. Finite Elements With Symbolic Computations and Code Generation
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Talk at Software Issues in Computational Science and Engineering (SCSE 2007), Uppsala, 2007-08-11, 2007
                                                                                                                                            3. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
                                                                                                                                              M. S. Alnæs, K.-A. Mardal and J. Sundnes
                                                                                                                                              Talk at MekIT'07: Fourth National Conference on Computational Mechanics, 2007
                                                                                                                                            4. A Finite Element Model of Cardiac Electrophysiology and Mechanics
                                                                                                                                              J. Sundnes, M. S. Alnæs and K.-A. Mardal
                                                                                                                                              VII International conference on computational plasticity, 2007
                                                                                                                                            5. CFD Analysis of Cerebrospinal Fluid Flow in the Cranio-Cervical Region
                                                                                                                                              A. E. Løvgren, S. Linge, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              Invited talk at the 21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
                                                                                                                                            6. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
                                                                                                                                              O. C. Myklebust, S. Hentschel and K.-A. Mardal
                                                                                                                                              Invited talk at the 21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
                                                                                                                                            7. Chiari Malformation - the Problem and a Mathematical Approach
                                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              Invited talk, Vindern Medical Center, 8th of December, Oslo, Norway, 2008
                                                                                                                                            8. Scientific Computing at Simula
                                                                                                                                              K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
                                                                                                                                              Invited Talk at Workshop on Cerebral Aneurysms and Subarachnoidal Hemorrhage, Tromsø Jan 24-26, 2008
                                                                                                                                            9. Two Steps Towards Automating Efficient Solution of Inverse Problems
                                                                                                                                              K.-A. Mardal, B. F. Nielsen and M. S. Alnæs
                                                                                                                                              Invited Talk at the FEniCS 08 Workshop, March 5-7,Baton Rouge, Louisiana, 2008
                                                                                                                                            10. Blood Flow Computations at Simula
                                                                                                                                              K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
                                                                                                                                              Invited talk at Medical Physics, University of Wisconsin, March 11., 2008
                                                                                                                                            11. Hemodynamics in the Circle of Willis
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Invited talk at Institute for Computational and Applied Mathematics, Muenster, Germany, November 18, 2008
                                                                                                                                            12. Cerebrospinal Fluid Flow in Normal and Chiari Subjects
                                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              talk, Seminar at CBC (Simula Research Laboratory), 16th of December, Oslo, Norway, 2008
                                                                                                                                            13. Cerebrospinal Fluid Flow Simulations - Normal Subjects and Patients With Chiari I Malformation
                                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              talk, Seminar at CBC (Simula Research Laboratory), 31st of October, Oslo, Norway), 2008
                                                                                                                                            14. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
                                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                                              talk, Seminar at CBC (Simula Research Laboratory), 25th of June, Oslo, Norway., 2008
                                                                                                                                            15. Simulating the Cerebral Fluid Flow Associated With Chiari I Malformation in Idealized Geometries
                                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal and H. P. Langtangen
                                                                                                                                              talk, Seminar at CBC (Simula Research Laboratory), 20th of May, Oslo, Norway., 2008
                                                                                                                                            16. Developing Flow Solver Methodology for Patientspecific Simulation of Hemodynamics
                                                                                                                                              K. Valen-Sendstad, A. Logg and K.-A. Mardal
                                                                                                                                              Talk at Workshop on Finite Element Methods for Fluids and Fluid-Structure Interaction, June 5, 2008
                                                                                                                                            17. SFC - the SyFi Form Compiler
                                                                                                                                              M. S. Alnæs and K.-A. Mardal
                                                                                                                                              Talk at the FEniCS 08 Workshop, March 5-7,Baton Rouge, Louisiana, 2008
                                                                                                                                            18. Cerebral Blood Flow
                                                                                                                                              K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
                                                                                                                                              Invited talk at Telemark College, Engineering Faculty, Porsgrunn, Norway, 2009, 2009
                                                                                                                                            19. Patient-Specific Simulations of Stroke and Syringomyelia
                                                                                                                                              K.-A. Mardal, S. Hentschel, A. Helgeland, H. P. Langtangen, S. Linge, A. E. Løvgren, A. Logg and K. Valen-Sendstad
                                                                                                                                              Talk : Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, Nov 03, 2009
                                                                                                                                            20. CSF Flow Modelling
                                                                                                                                              K.-A. Mardal, V. Haughton, S. Hentschel, H. P. Langtangen, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                                                                              Invited talk at CSR Flow Research Conference at University of Wisconsin, Nov 9, 2009
                                                                                                                                            21. Simulation Methodology for Bioflows
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal and A. Logg
                                                                                                                                              Talk : Advisory commitee meeting FFI project P1112 Aerosols: Dispersion, Transport and Consequences, May 05, 2009
                                                                                                                                            22. Patient-Specific Hemodynamics in FEniCS
                                                                                                                                              K.-A. Mardal, S. Hentschel, A. Logg and K. Valen-Sendstad
                                                                                                                                              Invited talk at the minisymposium on Computational Vascular and Cardiovascular Mechanics at USNCCM 2009, 2009
                                                                                                                                            23. Patient-Specific Hemodynamics in FEniCS
                                                                                                                                              K.-A. Mardal, A. Logg, S. Hentschel, O. C. Myklebust and K. Valen-Sendstad
                                                                                                                                              Presentation at the FEniCS 09 Workshop, 2009
                                                                                                                                            24. Cerebrospinal Fluid Flow Investigations With Modelling and Simulation
                                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              invited talk at The Chiari Institute, 14th of January, New York, U.S.A., 2009
                                                                                                                                            25. Simulating Normal and Abnormal CSF Flow With Idealized Geometries
                                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              talk, seminar on cerebrospinal fluid flow, 16th of January, University of Wisconsin, U.S.A., 2009
                                                                                                                                            26. Implementing a K-E Turbulence Model in the FEniCS Finite Element Programming Environment
                                                                                                                                              K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
                                                                                                                                              Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                            27. Tonsilar Herniation - How Is the CSF Flow Influenced?
                                                                                                                                              S. Linge, A. E. Løvgren, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              Invited talk at Rikshospitalet University Hospital, Oslo, Norway, 5th of June, 2009
                                                                                                                                            28. Some Biomedical Applications at Simula
                                                                                                                                              K.-A. Mardal, A. Helgeland, S. Hentschel, H. P. Langtangen, A. Logg, S. Linge, A. E. Løvgren and K. Valen-Sendstad
                                                                                                                                              Talk at the CBC Workshop on Computational Biology with UMB, 2009
                                                                                                                                            29. An Operator Theoretical Approach to Preconditioning Optimality Systems
                                                                                                                                              B. F. Nielsen and K.-A. Mardal
                                                                                                                                              Presented at the Applied Inverse Problems conference, Vienna, Austria, 2009
                                                                                                                                            30. The Baby Justicia Project: Biomechanical Investigations of the Shaken Baby Syndrome (SBS)
                                                                                                                                              A. Blechingberg, K.-A. Mardal, F. Strisland, J. Sundnes, T. O. Rognum, Å. Vege, M. Weensvangen and A. Stray-Pedersen
                                                                                                                                              WCB2010, Seminar session, Head/Brain Injury - Models, 2010
                                                                                                                                            31. Cerebrospinal Fluid (CSF) - Oscillating Flow and Pressure
                                                                                                                                              K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
                                                                                                                                            32. CSF Hydrodynamic in Patients With Syringomyelia and Chiari I Malformations
                                                                                                                                              K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                              Annual NUPUS meeting in Freudenstadt, 2010
                                                                                                                                            33. CSF Strømning I Forbindelse Med Chiari Malformasjon Og Syringomyelia
                                                                                                                                              K.-A. Mardal
                                                                                                                                              CBC Workshop on Clinical Issues Related to the Cerebrospinal Fluid, 2010
                                                                                                                                            34. From a Physical Problem to Computer Simulations
                                                                                                                                              K.-H. Støverud, K.-A. Mardal and H. P. Langtangen
                                                                                                                                              CBC Workshop on Cerebrospinal Fluid Flow in the Brain and Spinal Canal - Clinical, Experimental and Mathematical Models and Problems, Simula, May 28, 2010
                                                                                                                                            35. Cerebrospinal Fluid Flow in the Upper Cervical Canal in Patients With the Chiari I Malformation
                                                                                                                                              K.-A. Mardal, K.-H. Støverud, V. Haughton, S. Linge, H. P. Langtangen, G. Rutkowska and I. N. Drøsdal
                                                                                                                                              1ST CSF Hydrodynamics Symposium, 2011
                                                                                                                                            36. FEniCS: an Attempt to Combine Simplicity, Generality, Efficiency and Reliability
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Python-based Software for Solving Partial Differential Equations Minisymposium at SIAM Conference on Computational Science and Engineering, 2011
                                                                                                                                            37. Simulating Blood Flow in Cerebral Aneurysm
                                                                                                                                              K.-A. Mardal, K. Valen-Sendstad and Ø. Evju
                                                                                                                                              Minisymposium Numerical Methods for Biomedical Problems on Enumath, 2011
                                                                                                                                            38. The Finite Element Library FEniCS and Simulation of Blood Flow in Cerebral Aneurysms
                                                                                                                                              K.-A. Mardal, K. Valen-Sendstad, M. S. Alnæs, M. Mortensen, H. P. Langtangen and B. A. P. Reif
                                                                                                                                              Talk at CSB Seminar, University of Stuttgart, 2011
                                                                                                                                            39. Efficient Preconditioning of Optimality Systems
                                                                                                                                              K.-A. Mardal and B. F. Nielsen
                                                                                                                                              Precond 11, 2011
                                                                                                                                            40. Computational Cerebral Hemodynamics
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                              The Norwegian Defence Research Establishment, 2011
                                                                                                                                            41. Simulation Methodology for Cerebral Blood Flow
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                              Biomedical Simulation Lab, Institute of Biomaterials and Biomedical Engineering at the University of Toronto, 2011
                                                                                                                                            42. Direct Numerical Simulation of Transitional Flow in Patient-Specific Intracranial Aneurysms
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                              ASME 2011 Summer Bioengineering Conference, 2011
                                                                                                                                            43. 'Turbulence' in Cerebral Aneurysms
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, H. P. Langtangen, B. A. P. Reif and D. A. Steinman
                                                                                                                                              CBC Workshop on Biomechanics, 17-18 November, 2011
                                                                                                                                            44. Will FEniCS Fly?
                                                                                                                                              K.-A. Mardal and H. P. Langtangen
                                                                                                                                              FEniCS 12 workshop, 2012
                                                                                                                                            45. The Finite Element Library FEniCS + Blood Flow Simulations in Cerebral Aneurysms
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Marsden's lab at UCSD, 2012
                                                                                                                                            46. The Finite Element Library FEniCS
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Steinman's lab, University of Toronto, 2012
                                                                                                                                            47. CSF Flow Dynamics: Effects of Viscosity and Inertia
                                                                                                                                              K.-H. Støverud, V. Haughton, H. P. Langtangen and K.-A. Mardal
                                                                                                                                              ANSR 2012, New York, 2012
                                                                                                                                            48. The Minimal Residual Method Applied to Ill-Posed Optimality Systems; Eigenvalues and Convergence Properties
                                                                                                                                              B. F. Nielsen and K.-A. Mardal
                                                                                                                                              Numerical Methods for Optimal Control and Inverse Problems workshop, Munich, Germany, 2012
                                                                                                                                            49. Are Zombies a Threat to Mankind?
                                                                                                                                              K.-A. Mardal, H. P. Langtangen and P. Røtnes
                                                                                                                                              Invited talk for the opening of RF kjelleren at the University of Oslo, 2012
                                                                                                                                            50. Efficient Preconditioning of Optimality Systems
                                                                                                                                              K.-A. Mardal, B. F. Nielsen and M. S. Alnæs
                                                                                                                                              EMG 2012, 2012
                                                                                                                                            51. On Well-Posedness and Stability
                                                                                                                                              K.-A. Mardal
                                                                                                                                              CBC Seminar series, 2012
                                                                                                                                            52. Non-Newtonian Effects in Cerebral Aneurysms. a Computational Study on 12 Patient Specific Aneurysms
                                                                                                                                              Ø. Evju, K. Valen-Sendstad and K.-A. Mardal
                                                                                                                                              ICS '12, 2012
                                                                                                                                            53. Blood Flow in Cerebral Aneurysms - Can Turbulence Be a Risk Indicator?
                                                                                                                                              K.-A. Mardal
                                                                                                                                              SDU workshop, 2012
                                                                                                                                            54. Patient-Specific Simulations of Vasospasm in 3 Different Cases
                                                                                                                                              Ø. Evju, K.-A. Mardal, S. J. Bakke and A. G. Sorteberg
                                                                                                                                              Modelling Physiological Flows, 2013
                                                                                                                                            55. Efficient Preconditioning of Optimality Systems With Non-Self-Adjoint State Operators
                                                                                                                                              K.-A. Mardal and B. F. Nielsen
                                                                                                                                              IFIP 2013, minisymposia Preconditioning for PDE-Constrained Optimization, Linz, Austria, 2013
                                                                                                                                            56. Operator Preconditioning for Well-Posed and Ill-Posed Problems
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Preconditioning 2013, 2013
                                                                                                                                            57. On the Assumption of Laminar Flow in the Modeling of Physiological Flow
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Modelling of physiological flows (MPF 2013), 2013
                                                                                                                                            58. Er Zombier En Trussel Mot Menneskeheten?
                                                                                                                                              K.-A. Mardal, T. Seland, H. P. Langtangen and P. Røtnes
                                                                                                                                              Upop aften - Det norske student samfund, 2014
                                                                                                                                            59. On the Assumption of Laminar Flow in the Modeling of Physiological Flow
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Anvendt og beregningsorientert matematikk, Bergen, 2014
                                                                                                                                            60. On the Assumption of Laminar Flow of CSF in Chiari Patients
                                                                                                                                              K.-A. Mardal, A. Helgeland, V. Haughton, B. A. P. Reif and K.-H. Støverud
                                                                                                                                              international Chiari Research Group, 2014
                                                                                                                                            61. CSF Flow at Foramen Magnum
                                                                                                                                              K.-A. Mardal, K.-H. Støverud, G. Ringstad and P. K. Eide
                                                                                                                                              International Hydrocephalus Imaging Working Group,Montreal, Canada, 2014
                                                                                                                                            62. On Numerical Methods for Transitional Flow - Application to Blood Flow in Aneurysms
                                                                                                                                              K.-A. Mardal, O. M. Khan and K. Valen-Sendstad
                                                                                                                                              Quality and Validation of Computational Cardio-vascular Biomechanics, WCCM-ECCM-ECCOM, 2014
                                                                                                                                            63. Cerebrospinal Fluid Flow in Association With the Central Nervous System - Chiari and Drug Delivery
                                                                                                                                              K.-A. Mardal, K.-H. Støverud, M. Mortensen, K. Jain, B. Martin and S. Pahlavian
                                                                                                                                              MS on Computational Biomechanics, WCCM-ECCM-ECCOM, 2014
                                                                                                                                            64. Effect of Spinal Cord Viscoelasticity on Its Response to CSF Pressure Waves: a Computational Study
                                                                                                                                              N. Kylstad, K.-A. Mardal, V. Haughton and M. E. Rognes
                                                                                                                                              ASNR 53rd Annual Meeting & The Foundation of the ASNR Symposium 2015, April 25 – 30, Chicago, Illinois, 2015
                                                                                                                                            65. Poroelastic modeling of Syringomyelia - the effects of pia mater, central canal, median fissure, white and grey matter on pressure wave propagation and fluid movement within the cervical spinal cord
                                                                                                                                              K.-A. Mardal
                                                                                                                                              International Hydrocephalus Imaging Working Group, Chicago, 2015
                                                                                                                                            66. Role of CSF flow in the pathogenesis of Syringomyelia
                                                                                                                                              V. Haughton and K.-A. Mardal
                                                                                                                                              ASNR 53rd Annual Meeting & The Foundation of the ASNR Symposium 2015, April 25 – 30, 2015; Chicago, Illinois, 2015
                                                                                                                                            67. On the complexity of the Cerebrospinal fluid flow in the upper spinal column – is the assumption of laminar flow appropriate?
                                                                                                                                              K.-A. Mardal, K. Jain, K.-H. Støverud, G. Ringstad and P. K. Eide
                                                                                                                                              Cerebrospinal Fluid Dynamics Society Meeting, Amiens, 2015
                                                                                                                                            68. Computational modelling of the biomechanics in the central nervous system – Chiari and syringomyelia
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Complex materials; Mathematical models and numerical methods, Oslo, 2015
                                                                                                                                            69. Flows in complex geometries such as blood vessels and the central nervous system
                                                                                                                                              K.-A. Mardal
                                                                                                                                              EarthFlows kick-off meeting, Oslo, 2015
                                                                                                                                            70. Computational modelling of the biomechanics in the central nervous system – Chiari and syringomyelia
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Simpla meeting, Oslo, 2015
                                                                                                                                            71. Computational modelling of the biomechanics in the central nervous system – Chiari and syringomyelia
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Simula Research Laboratory, Oslo, 2015
                                                                                                                                            72. Overview of the modeling of water flow in and surrounding the central nervous system
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Istituto Italiano di Tecnologia, Piza, Italy, 2016
                                                                                                                                            73. Brain & Water:computational modeling of the aging brain
                                                                                                                                              K.-A. Mardal
                                                                                                                                              MedViz conference, Bergen, 2016
                                                                                                                                            74. Variational data assimilation for blood flow simulations
                                                                                                                                              K.-A. Mardal, S. W. Funke, M. Nordaas, Ø. Evju and M. S. Alnæs
                                                                                                                                              MS at SIAM UQ, Zurich, 2016
                                                                                                                                            75. Robustness of common hemodynamics indicators with respect to numerical resolution in 38 middle cerebral artery aneurysms
                                                                                                                                              K.-A. Mardal, Ø. Evju, J. Soler and A. Frangi
                                                                                                                                              MS at WCCM16, Seoul, 2016
                                                                                                                                            76. Experimental investigation of transitional effects at low Reynolds number in blood vessels: X-ray, Microphones and Simulations
                                                                                                                                              K.-A. Mardal, V. Frostlid and A. Jensen
                                                                                                                                              EarthFlows Workshop, UiO, Oslo, 2016
                                                                                                                                            77. Poroelastic modeling of the central nervous system: Chiari and dementia
                                                                                                                                              K.-A. Mardal
                                                                                                                                              Workshop on modeling of flow in live tissue: Methodological interaction between geo and life-sciences, CMR, Fantoft, Bergen, 2016
                                                                                                                                            78. Modelling and simulation of viscous and poroelastic fluid flow in the brain
                                                                                                                                              J. J. Lee, K.-A. Mardal, E. Piersanti and M. E. Rognes
                                                                                                                                              FEniCS16, Simula Research Laboratory, 2016
                                                                                                                                            79. On accurate and efficient simulations of multiple-network poroelastic modelling with applications to interstitial fluid flow in the human brain
                                                                                                                                              J. J. Lee, K.-A. Mardal, E. Piersanti and M. E. Rognes
                                                                                                                                              WCCM XII & APCOM VI, Seoul, 2016
                                                                                                                                            80. Simulating Cerebrospinal Fluid Flow and Spinal Cord Movement Associated with Syringomyelia
                                                                                                                                              V. Vinje, K.-A. Mardal, V. Haughton and M. E. Rognes
                                                                                                                                              Chalmers Institute of Technology, 2016
                                                                                                                                            81. Modelling pulsatility in the context of Normal-Pressure Hydrocephalus via multiple-network poroelasticity
                                                                                                                                              E. Piersanti, J. J. Lee, K.-A. Mardal and M. E. Rognes
                                                                                                                                              5th International Conference on Computational and Mathematical Biomedical Engineering, Pittsburgh, US, 2017
                                                                                                                                            82. Physics of oscillatory CSF Flow
                                                                                                                                              K.-A. Mardal, E. K. Lindstrøm and V. Haughton
                                                                                                                                              ASSR, San Diego, 2017
                                                                                                                                            83. Experimental investigation of transitional effects at low Reynolds number in blood vessels - X-ray, microphones and simulations
                                                                                                                                              K.-A. Mardal, V. Frostlid, A. Jensen and K. Jain
                                                                                                                                              CMBE 2017, Pittsburgh, 2017
                                                                                                                                            84. Simulating the fluid flow of the lymphatic system - extracellular fluid flow
                                                                                                                                              K.-A. Mardal, K. E. Holter and K. H. Pettersen
                                                                                                                                              The 4th CSF symposium, Atlanta, 2017
                                                                                                                                            85. Computational modeling of the glymphatic system: how is waste cleared from the brain?
                                                                                                                                              K.-A. Mardal
                                                                                                                                              HPCSE 2017, Ostrava, 2017

                                                                                                                                            Posters

                                                                                                                                            1. Revisiting 'Turbulence' in Cerebral Aneurysms
                                                                                                                                              K. Valen-Sendstad, K.-A. Mardal and D. A. Steinman
                                                                                                                                              2012
                                                                                                                                            2. On Non-Newtonian Effects in Cerebral Aneurysms: a Computational Study on 12 Patient Specific Aneurysms
                                                                                                                                              Ø. Evju, K.-A. Mardal and K. Valen-Sendstad
                                                                                                                                              2012

                                                                                                                                            Andre Massing

                                                                                                                                              Articles in International Journals

                                                                                                                                              1. Efficient Implementation of Finite Element Methods on Nonmatching and Overlapping Meshes in Three Dimensions
                                                                                                                                                A. Massing, M. G. Larson and A. Logg
                                                                                                                                                SIAM Journal on Scientific Computing, vol. 35, pp. C23—C47, 2013, [DOI]
                                                                                                                                              2. CutFEM: Discretizing Geometry and Partial Differential Equations
                                                                                                                                                E. Burman, S. Claus, P. Hansbo, M. G. Larson and A. Massing
                                                                                                                                                International Journal of Numerical Methods in Engineering, vol. 104, pp. 472—501, 2014
                                                                                                                                              3. A Stabilized Nitsche Fictitious Domain Method for the Stokes Problem
                                                                                                                                                A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                                                Journal of Scientific Computing, vol. 61, pp. 604—628, 2014, [DOI]
                                                                                                                                              4. A Stabilized Nitsche Overlapping Mesh Method for the Stokes Problem
                                                                                                                                                A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                                                Numerische Mathematik, vol. 128, pp. 73—101, 2014, [DOI]
                                                                                                                                              5. A Nitsche-based Cut Finite Element Method for a Fluid-Structure Interaction Problem
                                                                                                                                                A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                                                Communications in Applied Mathematics and Computational Science, vol. 10, pp. 97—120, 2015, [DOI]
                                                                                                                                              6. A Stabilized Cut Finite Element Method for the Three Field Stokes Problem
                                                                                                                                                E. Burman, S. Claus and A. Massing
                                                                                                                                                SIAM Journal on Scientific Computing, vol. 37, pp. A1705—A1726, 2015
                                                                                                                                              7. A cut discontinuous Galerkin method for the Laplace–Beltrami operator
                                                                                                                                                E. Burman, P. Hansbo, M. G. Larson and A. Massing
                                                                                                                                                IMA Journal of Numerical Analysis, vol. 37, pp. 138—169, 2016, [DOI]

                                                                                                                                              Edited Books

                                                                                                                                              1. Proceedings of the 26th Nordic Seminar on Computational Machanics
                                                                                                                                                A. Logg, K.-A. Mardal and A. Massing
                                                                                                                                                Simula Research Laboratory, 2013

                                                                                                                                              Refereed Proceedings

                                                                                                                                              1. Towards an Implementation of Nitsche's Method on Overlapping Meshes in 3D
                                                                                                                                                A. Massing, M. G. Larson and A. Logg
                                                                                                                                                in AIP Conference Proceedings (ICNAAM 2010), 2010
                                                                                                                                              2. A Stabilized Nitsche Fictitious Domain Formulation for the Three-Field Stokes Problem
                                                                                                                                                S. Claus, A. Massing and E. Burman
                                                                                                                                                in The 26th Nordic Seminar on Computational Mechanics, 2013

                                                                                                                                              Theses

                                                                                                                                              1. Analysis and Implementation of Finite Element Methods on Overlapping and Fictitious Domains
                                                                                                                                                A. Massing
                                                                                                                                                Ph.D. Thesis, University of Oslo, 2012

                                                                                                                                              Talks

                                                                                                                                              1. Convergence Theory for Adaptive Finite Elements
                                                                                                                                                A. Massing
                                                                                                                                                AC/DC seminar series, 2010
                                                                                                                                              2. Nitsche's Method on Overlapping Meshes in 3D
                                                                                                                                                A. Massing
                                                                                                                                                AC/DC seminar series, 2010
                                                                                                                                              3. Efficient Implementation of Nitsche's Method on Overlapping Meshes for Interface Problems in 3D
                                                                                                                                                A. Massing
                                                                                                                                                FEF 2011, Munich, Germany, 2011
                                                                                                                                              4. Efficient Implementation of Nitsche's Method on Overlapping Meshes for Coupled Problems in 3D
                                                                                                                                                A. Massing
                                                                                                                                                Coupled Problems 2011, Kos, Greece, 2011
                                                                                                                                              5. Efficient Implementation of Nitsche's Method on Overlapping Meshes in 3D
                                                                                                                                                A. Massing
                                                                                                                                                CSE 2011, Reno Nevada, USA, 2011
                                                                                                                                              6. Nitsche's Method for Fictitious Domain and Overlapping Meshes (in 3D)
                                                                                                                                                A. Massing
                                                                                                                                                FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
                                                                                                                                              7. Nitsche's Method for Fictitious Domain and Overlapping Meshes (in 3D)
                                                                                                                                                A. Massing
                                                                                                                                                UMIT Research Seminar, Umeå, Sweden, 2011
                                                                                                                                              8. The C(ontinuous) I(nterior) P(enalty) Method
                                                                                                                                                A. Massing
                                                                                                                                                CBC Seminar series, 2012
                                                                                                                                              9. Nitsche's Method for Fictitious Domains and Overlapping Meshes: Analysis and Implementation
                                                                                                                                                A. Massing
                                                                                                                                                FEniCS 12, 2012
                                                                                                                                              10. Nitsche-Based Overlapping and Fictitious Domain Methods for the Stokes Problem
                                                                                                                                                A. Massing
                                                                                                                                                Chemnitz FEM Symposium, 2012
                                                                                                                                              11. Nitsche-Based Finite Element Methods Problem on Cut and Composite Meshes - a Look Behind the Scenes
                                                                                                                                                A. Massing
                                                                                                                                                ACM Seminar, Institute for Computational Mechanics, TU München, 2012
                                                                                                                                              12. Nitsche-Based Finite Element Methods for the Stokes Problem on Cut and Composite Meshes
                                                                                                                                                A. Massing
                                                                                                                                                Graduate School CE Seminar, Darmstadt, 2012
                                                                                                                                              13. Nitsche-Based Finite Element Methods for the Stokes Problem on Cut and Composite Meshes
                                                                                                                                                A. Massing
                                                                                                                                                Brighton, 2012
                                                                                                                                              14. Nitsche-Based Finite Element Methods for the Stokes Problem on Cut and Composite Meshes
                                                                                                                                                A. Massing
                                                                                                                                                Internal seminar, TU Darmstadt, 2012
                                                                                                                                              15. Nitsche-Based Finite Element Methods for the Stokes Problem on Cut and Composite Meshes
                                                                                                                                                A. Massing
                                                                                                                                                Internal Seminar, University of Oslo, 2012
                                                                                                                                              16. A Robust Nitsche-Based Fixed-Grid Method for Fluid Problems With Applications to Domain-Bridging and FSI Problems
                                                                                                                                                A. Massing
                                                                                                                                                FEF2013, San Diego, 2013
                                                                                                                                              17. Analysis and Implementation of Nitsche-Based Domain-Bridging Method for Fluid Problems
                                                                                                                                                A. Massing
                                                                                                                                                SIAM CSE'13, Boston, 2013
                                                                                                                                              18. Finite Element Methods for Cut and Composite Meshes Using FEniCS
                                                                                                                                                A. Massing
                                                                                                                                                FEniCS'13, Cambridge, 2013
                                                                                                                                              19. Cut and Composite Mesh Methods for Fluid-Structure Interaction Problems With Large Deformation
                                                                                                                                                A. Massing
                                                                                                                                                Coupled Problems 2013, Ibiza, 2013
                                                                                                                                              20. Nitsche-Based Finite Element Methods on Cut and Composite Meshes
                                                                                                                                                A. Massing
                                                                                                                                                AMCG Seminar, Imperial College, London, 2013
                                                                                                                                              21. Nitsche-Based Finite Element Methods on Cut and Composite Meshes
                                                                                                                                                A. Massing
                                                                                                                                                USNCCM12, Raleigh, 2013
                                                                                                                                              22. Nitsche-Based Cut and Composite Mesh Methods for Fluid and Fluid-Structure Interaction Problems
                                                                                                                                                A. Massing
                                                                                                                                                XFEM 2013, Lyon, 2013
                                                                                                                                              23. Computing Physiological Flows: From Cutting Meshes and Automated Code Generation to Optimization of Flow
                                                                                                                                                A. Massing
                                                                                                                                                Mox Seminar, Politecnico di Milano, Milan, 2013
                                                                                                                                              24. Cut Finite Element Methods for Fluid and Fluid-Structure Interaction Problems
                                                                                                                                                A. Massing
                                                                                                                                                Advances in Fluid-Structure Interaction, Tokyo, Japan, 2014
                                                                                                                                              25. Cut Finite Element Methods for Multi-Physics Problems (in FEniCS!)
                                                                                                                                                E. Burman, S. Claus, P. Hansbo, M. G. Larson and A. Massing
                                                                                                                                                18th European Conference on Mathematics for Industry, 2014
                                                                                                                                              26. Developing simulation technology to solve biomedical problems: analysis, implementation and applications
                                                                                                                                                M. E. Rognes, E. Piersanti and A. Massing
                                                                                                                                                University of Uppsala, 2016

                                                                                                                                              Andrew D. McCulloch

                                                                                                                                                Articles in International Journals

                                                                                                                                                1. Cardiac Resynchronization: Insight From Experimental and Computational Models
                                                                                                                                                  J. Lumens, K. Vernooy, J. H. Omens, L. J. Mulligan, T. Delhaas, T. Arts, A. D. McCulloch and F. W. Prinzen
                                                                                                                                                  Progress in Biophysics and Molecular Biology, vol. 97, pp. 543—561, 2008, [DOI]
                                                                                                                                                2. Mechanisms of Transmurally Varying Myocyte Electromechanics in an Integrated Computational Model
                                                                                                                                                  S. G. Campbell, S. N. Flaim, C. H. Leem and A. D. McCulloch
                                                                                                                                                  Philosophical Transactions of the Royal Society A, vol. 366, pp. 3361—3380, 2008, [DOI]
                                                                                                                                                3. Discovering Regulators of the Drosophila Cardiac Hypoxia Response Using Automated Phenotyping Technology
                                                                                                                                                  J. D. Feala, J. H. Omens, G. Paternostro and A. D. McCulloch
                                                                                                                                                  Annals of the New York Academy of Sciences, vol. 1123, pp. 169—177, 2008, [DOI]
                                                                                                                                                4. The Role of Mechanoelectric Feedback in Vulnerability to Electric Shock
                                                                                                                                                  W. Li, V. Gurev and A. D. McCulloch
                                                                                                                                                  Progress in Biophysics and Molecular Biology, vol. 97, pp. 461—478, 2008, [DOI]
                                                                                                                                                5. Effect of Transmurally Heterogeneous Myocyte Excitation-contraction Coupling on Canine Left Ventricular Electromechanics
                                                                                                                                                  S. G. Campbell, E. Howard, J. Aguado-Sierra, B. A. Coppola, J. H. Omens, L. J. Mulligan and A. D. McCulloch
                                                                                                                                                  Experimental Physiology, vol. 94, pp. 541—552, 2009, [DOI]
                                                                                                                                                6. Metabolism As Means for Hypoxia Adaptation: Metabolic Profiling and Flux Balance Analysis
                                                                                                                                                  J. D. Feala, L. C. Coquin, D. Zhou, G. G. Haddad, G. Paternostro and A. D. McCulloch
                                                                                                                                                  BMC Systems Biology, vol. 3, pp. 3—91, 2009, [DOI]
                                                                                                                                                7. Hypertrophic Gene Expression Induced by Chronic Stretch of Excised Mouse Heart Muscle
                                                                                                                                                  A. M. Raskin, M. Hoshijima, E. Swanson, A. D. McCulloch and J. H. Omens
                                                                                                                                                  Mol Cell Biomech., vol. 6, pp. 145—159, 2009
                                                                                                                                                8. Systems Approaches and Algorithms for Discovery of Combinatorial Therapies
                                                                                                                                                  J. D. Feala, J. Cortes, P. M. Duxbury, C. Piermarocchi, A. D. McCulloch and G. Paternostro
                                                                                                                                                  Systems Biology and Medicine, vol. 2, pp. 181—193, 2009, [DOI]
                                                                                                                                                9. Cardiac Myocyte Force Development During Differentiation and Maturation
                                                                                                                                                  J. G. Jacot, H. Kita-Matsuo, K. A. Wei, H. S. V. Chen, J. H. Omens, M. Mercola and A. D. McCulloch
                                                                                                                                                  Annals of the New York Academy of Sciences, vol. 1188, pp. 121—127, 2010, [DOI]
                                                                                                                                                10. Numerical Analysis of Ca2+ Signaling in Rat Ventricular Myocytes With Realistic Transverse-Axial Tubular Geometry and Inhibited Sarcoplasmic Reticulum
                                                                                                                                                  Y. Cheng, Z. Yu, M. Hoshijima, M. J. Holst, A. D. McCulloch, A. J. McCammon and A. P. Michailova
                                                                                                                                                  PLoS Computational Biology, vol. 6, pp. e1000972, 2010, [DOI]
                                                                                                                                                11. Systems Approaches and Algorithms for Discovery of Combinatorial Therapies
                                                                                                                                                  J. D. Feala, J. Cortes, P. M. Duxbury, C. Piermarocchi, A. D. McCulloch and G. Paternostro
                                                                                                                                                  Wiley Interdisciplinary Reviews: Systems Biology and Medicine, vol. 2, pp. 93, 2010, [DOI]
                                                                                                                                                12. Coupling of Adjacent Tropomyosins Enhances Cross-Bridge-Mediated Cooperative Activation in a Markov Model of the Cardiac Thin Filament
                                                                                                                                                  S. G. Campbell, F. V. Lionetti, K. S. Campbell and A. D. McCulloch
                                                                                                                                                  Biophysical Journal, vol. 98, pp. 2254—2264, 2010, [DOI]
                                                                                                                                                13. Determination of Three-Dimensional Ventricular Strain Distributions in Gene-Targeted Mice Using Tagged MRI
                                                                                                                                                  J. S. Chuang, A. Zemljic-Harpf, R. S. Ross, L. R. Frank, A. D. McCulloch and J. H. Omens
                                                                                                                                                  Magnetic Resonance in Medicine, vol. 64, pp. 1281—1288, 2010, [DOI]
                                                                                                                                                14. Ventricular Dilation and Electrical Dyssynchrony Synergistically Increase Regional Mechanical Non-Uniformity But Not Mechanical Dyssynchrony; a Computational Model
                                                                                                                                                  J. H. Omens, A. D. McCulloch and L. J. Mulligan
                                                                                                                                                  Circulation: Heart Failure, vol. 3, pp. 528—536, 2010
                                                                                                                                                15. On Defining Candidate Drug Characteristics for Long-QT
                                                                                                                                                  A. Tveito, G. T. Lines, P. Li and A. D. McCulloch
                                                                                                                                                  Mathematical Biosciences and Engineering, vol. 8, pp. 861—873, 2011
                                                                                                                                                16. Multi-Scale Computational Models of Familial Hypertrophic Cardiomyopathy: Genotype to Phenotype
                                                                                                                                                  S. G. Campbell and A. D. McCulloch
                                                                                                                                                  Journal of the Royal Society Interface, vol. 8, 2011, [DOI]
                                                                                                                                                17. Improvement in Pump Function With Endocardial Biventricular Pacing Increases With Activation Time at the Left Ventricular Pacing Site in Failing Canine Hearts
                                                                                                                                                  E. J. Howard, J. W. Covell, L. J. Mulligan, A. D. McCulloch and J. H. Omens
                                                                                                                                                  American Journal of Physiology - Heart and Circulatory Physiology, vol. 301, pp. H1447—H1455, 2011, [DOI]
                                                                                                                                                18. Modeling Cardiac Calcium Sparks in a Three-Dimensional Reconstruction of a Calcium Release Unit
                                                                                                                                                  J. E. Hake, A. Edwards, Z. Yu, P. M. Kekenes-Huskey, A. P. Michailova, A. J. McCammon, M. J. Holst, M. Hoshijima and A. D. McCulloch
                                                                                                                                                  The Journal of Physiology, vol. 590, pp. 4403—4422, 2012
                                                                                                                                                19. Modeling Effects of L-Type Ca2+ Current and Na+-Ca2+ Exchanger on Ca2+ Trigger Flux in Rabbit Myocytes With Realistic T-Tubule Geometries
                                                                                                                                                  P. M. Kekenes-Huskey, Y. Cheng, J. E. Hake, F. B. Sachse, J. H. Bridge, M. J. Holst, A. J. McCammon, A. D. McCulloch and A. P. Michailova
                                                                                                                                                  Frontiers in Physiology, vol. 3, pp. 351, 2012
                                                                                                                                                20. Slow Calcium-Depolarization-Calcium Waves May Initiate Fast Local Depolarization Waves in Ventricular Tissue
                                                                                                                                                  A. Tveito, G. T. Lines, A. Edwards, M. Maleckar, A. P. Michailova, J. E. Hake and A. D. McCulloch
                                                                                                                                                  Progress in Biophysics and Molecular Biology, vol. 110, pp. 295—304, 2012
                                                                                                                                                21. Patient-Specific Models of Cardiac Biomechanics
                                                                                                                                                  A. Krishnamurthy, C. T. Villongco, J. Chuang, L. R. Frank, V. Nigam, E. Belezzuoli, P. Stark, D. E. Krummen, S. Narayan, J. H. Omens and A. D. McCulloch
                                                                                                                                                  Journal of Computational Physics, vol. 244, pp. 4—21, 2013, [DOI]
                                                                                                                                                22. Molecular and Subcellular-Scale Modeling of Nucleotide Diffusion in the Cardiac Myofilament Lattice
                                                                                                                                                  P. M. Kekenes-Huskey, T. Liao, A. K. Gillette, J. E. Hake, Y. Zhang, A. P. Michailova, A. D. McCulloch and A. J. McCammon
                                                                                                                                                  Biophysical Journal, vol. 105, pp. 2130, 2013, [DOI]
                                                                                                                                                23. Biomechanics of Cardiac Electromechanical Coupling and Mechanoelectric Feedback.
                                                                                                                                                  E. Pfeiffer, J. Tangney, J. Omens and A. D. McCulloch
                                                                                                                                                  Journal of Biomechanical Engineering, vol. 136, 2014
                                                                                                                                                24. Improved Discretisation and Linearisation of Active Tension in Strongly Coupled Cardiac Electro-Mechanics Simulations
                                                                                                                                                  J. Sundnes, S. Wall, H. Osnes, T. Thorvaldsen and A. D. McCulloch
                                                                                                                                                  Computer Methods in Biomechanics and Biomedical Engineering, vol. 17, pp. 604—15, 2014
                                                                                                                                                25. Non-equilibrium reactivation of Na+ current drives early afterdepolarizations in mouse ventricle
                                                                                                                                                  A. Edwards, E. Grandi, J. E. Hake, S. Patel, P. Li, S. Miyamoto, J. H. Omens, J. H. Brown, D. M. Bers and A. D. McCulloch
                                                                                                                                                  Circulation: Arrhythmia and Electrophysiology, vol. 7, pp. 1205—1213, 2014
                                                                                                                                                26. Toward a hierarchy of mechanisms in CaMKII-mediated arrhythmia
                                                                                                                                                  K. P. Vincent, A. D. McCulloch and A. Edwards
                                                                                                                                                  Frontiers in Pharmacology, vol. 5, 2014
                                                                                                                                                27. A novel computational model of mouse myocyte electrophysiology to assess the synergy between Na+ loading and CaMKII
                                                                                                                                                  S. Morotti, A. Edwards, A. D. McCulloch, D. M. Bers and E. Grandi
                                                                                                                                                  The Journal of physiology, vol. 592, pp. 1181—1197, 2014
                                                                                                                                                28. Computational modeling of subcellular transport and signaling
                                                                                                                                                  J. E. Hake, P. M. Kekenes-Huskey and A. D. McCulloch
                                                                                                                                                  Current Opinion in Structural Biology, vol. 25, pp. 92–97, 2014, [DOI]
                                                                                                                                                29. Increased Membrane Capacitance Is the Dominant Mechanism of Stretch-Dependent Conduction Slowing in the Rabbit Heart: a Computational Study
                                                                                                                                                  B. L. de Oliveira, J. Sundnes, S. Wall and A. D. McCulloch
                                                                                                                                                  Cellular and Molecular Bioengineering, vol. 8, pp. 237—246, 2015
                                                                                                                                                30. High-order finite element methods for cardiac monodomain simulations
                                                                                                                                                  K. P. Vincent, M. J. Gonzales, A. K. Gillette, C. T. Villongco, S. Pezzuto, J. H. Omens, M. J. Holst and A. D. McCulloch
                                                                                                                                                  Frontiers in Physiology, 2015, [DOI]
                                                                                                                                                31. Computing rates of Markov models of voltage-gated ion channels by inverting partial differential equations governing the probability density functions of the conducting and non-conducting states
                                                                                                                                                  A. Tveito, G. T. Lines, A. Edwards and A. D. McCulloch
                                                                                                                                                  Mathematical Biosciences, vol. 277, pp. 126—135, 2016

                                                                                                                                                Chapters in Books

                                                                                                                                                1. A Computational Framework for Patient-Specific Multi-Scale Cardiac Modeling
                                                                                                                                                  J. Aguado-Sierra, F. V. Lionetti, D. Hunt, C. T. Villongco, M. Gonzales, S. G. Campbell and A. D. McCulloch
                                                                                                                                                  in Patient-Specific Modeling of the Cardiovascular System; Technology-Driven Personalized Medicine, Springer, pp. 202—223, 2010
                                                                                                                                                2. Calcium Signaling in Cardiomyocyte Models With Realistic Geometries (6th Edition)
                                                                                                                                                  A. P. Michailova, A. Edwards, J. E. Hake, M. Hoshijima and A. D. McCulloch
                                                                                                                                                  in Cardiac Electrophysiology: From Cell to Bedside, Edited by D. Zipes and J. Jalife, Elsevier Science, pp. 33.1—33.10, 2013
                                                                                                                                                3. Calcium Signaling in Cardiomyocyte Models With Realistic Geometries (7th Edition)
                                                                                                                                                  A. Edwards, J. E. Hake, A. P. Michailova, M. Hoshijima and A. D. McCulloch
                                                                                                                                                  in Cardiac Electrophysiology: From Cell to Bedside, Edited by D. Zipes and J. Jalife, Elsevier Science, 2016

                                                                                                                                                Refereed Proceedings

                                                                                                                                                1. Source-to-Source Optimization of CUDA C for GPU Accelerated Cardiac Cell Modeling
                                                                                                                                                  F. V. Lionetti, A. D. McCulloch and S. Baden
                                                                                                                                                  in Proceedings of Euro-Par 2010, 2010

                                                                                                                                                Conference Proceedings

                                                                                                                                                1. GPU Accelerated Solvers for ODEs Describing Cardiac Membrane Equations
                                                                                                                                                  F. V. Lionetti, A. D. McCulloch and S. Baden
                                                                                                                                                  in Proceeding of the GPU technology Conference, 2009
                                                                                                                                                2. GPU Accelerated Electrophysiology Simulations
                                                                                                                                                  F. V. Lionetti, A. D. McCulloch and S. Baden
                                                                                                                                                  in Proceedings of the 2009 ACM/IEEE Conference on supercomputing (SC 2009), 2009
                                                                                                                                                3. A Markov-State Model for the Regulation of the Sarcoplasmic Reticulum Ca2+ ATPase by Phospholamban
                                                                                                                                                  P. M. Kekenes-Huskey, A. Edwards, J. E. Hake, A. P. Michailova, A. J. McCammon and A. D. McCulloch
                                                                                                                                                  in Annual meeting in Biophysical society, 2014

                                                                                                                                                Talks

                                                                                                                                                1. Multi-Scale Modeling of Cardiac Electromechanical Interactions
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Talk at CBC Workshop on Biomedical Computing, Simula, 2007
                                                                                                                                                2. Seminar: Multi-Scale Modeling of the Heart
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Talk at the MURPA eSeminar, Monash University, Melbourne, Australia, 2008
                                                                                                                                                3. Towards Image-Based Patient-Specific Multi-Scale Modeling of the Failing Heart
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Invited talk at the 2008 SIAM Life Sciences Conferences, Session MS35, Montreal, Canada, 2008
                                                                                                                                                4. Physiome Research in the USA
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Invited talk at ICT-BIO, The European Commission, Brussels, 2008
                                                                                                                                                5. Mechanobiology of Normal and Failing Myocardium
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Talk at the Physiology Department, Oxford University, 2008
                                                                                                                                                6. Emerging Role for Multi-Scale Modeling in the Biomechanical Device Industry
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Keynote talk at the 3rd ASME Frontiers in Biomechanical Devices Conference, Irvine, California, USA, 2008
                                                                                                                                                7. Systems Biology and Multi-Scale Modeling of the Heart
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Seminar at the University of Washington, Department of Bioengineering, 2008
                                                                                                                                                8. Systems Biology and Multi-Scale Modeling of the Heart
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Plenary lecture at Pacific Biocomputing Symposium, Kona, Hawaii, 2008
                                                                                                                                                9. Systems Biology and Multi-Scale Modeling of the Heart
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Talk at University of Illinois, Chicago, Department of Physiology and Biophysics, 2008
                                                                                                                                                10. Multi-Scale Modeling of Cardiac Mechanoenergetics
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Talk at the Welcome Trust Physiome Workshop on Multi-scale Modeling of the heart, Auckland, New Zealand, 2008
                                                                                                                                                11. Multi-Scale Modeling of Cardiac Electromechanics
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Talk at the Biomechanical Engineering Math Seminar, Worchester Polytechnic Institute, 2008
                                                                                                                                                12. Multi-Scale Modeling of Cardiac Electromechanics
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Talk at the Symposium on Computational Physiology, Experimental Biology 2008, San Diego, 2008
                                                                                                                                                13. Multi-Scale Modeling and Systems Biology of Cardiac Regulatory Mechanisms
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Invited talk at the MEI International Symposium Physiome and Systems Biology for Integrated Life Sciences and Predictive Medicine, San Fransisco, 2008
                                                                                                                                                14. Multi-Scale Modeling of the Heart
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Invited talk at the NCRR P41 Directors, National Library of Medicine, NIH, Bethesda, Maryland, USA, 2008
                                                                                                                                                15. Multi-Scale Modeling of Ventricular Electromechanics
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Invited talk at the Cardiovascular System Dynamics Society HVIII Conference, St. Louis, USA, 2008
                                                                                                                                                16. Mechanosensing and Mechanotransduction in the Myocardium
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Seminar at the Cardiology Department, Academic Hospital Maastricht, The Netherlands, 2008
                                                                                                                                                17. GPU Accelerated Electrophysiology Simulations.
                                                                                                                                                  F. V. Lionetti, A. D. McCulloch and S. Baden
                                                                                                                                                  Talk, Poster at GPU Technology conference, San Jose, California, 2009
                                                                                                                                                18. GPU Accelerated Electrophysiology Simulations
                                                                                                                                                  F. V. Lionetti, A. D. McCulloch and S. Baden
                                                                                                                                                  Talk, poster at the 2009 ACM/IEEE Conference on Supercomputing (SC 2009), 2009
                                                                                                                                                19. Multi-Scale Modeling of the Failing Heart:
From Mouse to Man
                                                                                                                                                  A. D. McCulloch
                                                                                                                                                  Simula-UiO-UCSD Summer School in Cardiac Modeling, 2014

                                                                                                                                                Posters

                                                                                                                                                1. A Stochastic Model of the Ryanodine Receptor Featuring Coupled Gating and Competitive Binding of Luminal and Cytosolic Ca2+ and Mg2+
                                                                                                                                                  J. E. Hake, W. E. Louch, K. Haugen, I. Sjaastad, O. M. Sejersted, A. D. McCulloch, A. P. Michailova and G. T. Lines
                                                                                                                                                  2011
                                                                                                                                                2. Modeling Calcium Sparks in a Three-Dimensional Reconstruction of a Cardiac Calcium Release Unit
                                                                                                                                                  J. E. Hake, A. Edwards, Z. Yu, P. M. Kekenes-Huskey, A. P. Michailova, A. J. McCammon, M. J. Holst, M. Hoshijima and A. D. McCulloch
                                                                                                                                                  2012
                                                                                                                                                3. βAR-Stimulation Causes EADs But Not DADs in Pre-Failure CAMKIIδC Transgenic Myocytes
                                                                                                                                                  A. Edwards, J. E. Hake, J. H. Brown and A. D. McCulloch
                                                                                                                                                  Biophysical Society annual meeting, 2012
                                                                                                                                                4. Modeling Calcium Dynamics in Realistic Rabbit Ventricular Myocytes With Several Transverse Tubules
                                                                                                                                                  P. M. Kekenes-Huskey, J. E. Hake, Y. Cheng, M. J. Holst, F. B. Sachse, J. H. Bridge, A. D. McCulloch, A. J. McCammon and A. P. Michailova
                                                                                                                                                  2012

                                                                                                                                                Kristin Sarah Mcleod

                                                                                                                                                  Articles in International Journals

                                                                                                                                                  1. A statistical shape modelling framework to extract 3D shape biomarkers from medical imaging data: Assessing arch morphology of repaired coarctation of the aorta
                                                                                                                                                    J. L. Bruse, K. S. Mcleod, G. Biglino, H. N. Ntsinjana, C. Capelli, T.-Y. Hsia, M. Sermesant, X. Pennec, A. M. Taylor and S. Schievano
                                                                                                                                                    BMC Medical Imaging, 2016, [DOI]
                                                                                                                                                  2. Looks do matter: Aortic arch shape following hypoplastic left heart syndrome palliation correlates with cavopulmonary outcomes
                                                                                                                                                    J. L. Bruse, E. Cervi, K. S. Mcleod, G. Biglino, M. Sermesant, X. Pennec, A. M. Taylor, S. Schievano and T.-Y. Hsia
                                                                                                                                                    Annals of Thoracic Surgery, 2016, [DOI]
                                                                                                                                                  3. Ventricular structure in ARVC: Going beyond volumes as a measure of risk
                                                                                                                                                    K. S. Mcleod, S. Wall, I. S. Leren, J. Saberniak and K. Haugaa
                                                                                                                                                    Journal of Cardiovascular Magnetic Resonance, vol. 18, pp. 73, 2016, [DOI]
                                                                                                                                                  4. How Successful is Successful? Aortic Arch Shape Following Successful Aortic Coarctation Repair Correlates with Left Ventricular Function
                                                                                                                                                    J. L. Bruse, A. Khushnood, K. S. Mcleod, G. Biglino, M. Sermesant, X. Pennec, A. M. Taylor, T.-Y. Hsia and S. Schievano
                                                                                                                                                    The Journal of Thoracic and Cardiovascular Surgery, vol. 153, pp. 418—427, 2016, [DOI]
                                                                                                                                                  5. Detecting Clinically Meaningful Shape Clusters in Medical Image Data: Metrics Analysis for Hierarchical Clustering applied to Healthy and Pathological Aortic Arches
                                                                                                                                                    J. L. Bruse, A. Khushnood, K. S. Mcleod, H. N. Ntsinjana, T.-Y. Hsia, M. Sermesant, X. Pennec, A. M. Taylor and S. Schievano
                                                                                                                                                    IEEE Transactions on Biomedical Engineering, 2017, [DOI]

                                                                                                                                                  Books

                                                                                                                                                  1. Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges
                                                                                                                                                    T. Mansi, K. S. Mcleod, M. Pop, K. Rhode, M. Sermesant and A. Young
                                                                                                                                                    Springer International Publishing, 2017

                                                                                                                                                  Refereed Proceedings

                                                                                                                                                  1. Fast Sweeping vs. Fast Marching for Eikonal Methods of Electrophysiology - A Potential for Significantly More Efficient Computation?
                                                                                                                                                    K. S. Mcleod, S. Wall and M. Noack
                                                                                                                                                    in Cardiac Physiome Workshop, Auckland, New Zealand, 2015
                                                                                                                                                  2. New Insights in Ventriculo-Arterial Coupling and Ventricular Shape in Repaired Tetralogy of Fallot: A Retrospective Cohort Study
                                                                                                                                                    G. Biglino, N. Arya, K. S. Mcleod and S. Schievano
                                                                                                                                                    in 19th Annual Scientific Sessions of the Society for Cardiovascular Magnetic Resonance (SCMR), 2016
                                                                                                                                                  3. Looks Do Matter! Aortic Arch Shape Following Hypoplastic Left Heart Syndrome Palliation Correlates with Cavopulmonary Physiology and Outcomes
                                                                                                                                                    J. L. Bruse, E. Cervi, K. S. Mcleod, G. Biglino, M. Sermesant, X. Pennec, A. M. Taylor and S. Schievano
                                                                                                                                                    in 52nd Annual Meeting of The Society of Thoracic Surgeons, 2016
                                                                                                                                                  4. CMR-based 3D Statistical Shape Modelling Reveals Left Ventricular Morphological Differences Between Healthy Controls and Arterial Switch Operation Survivors
                                                                                                                                                    J. L. Bruse, H. N. Ntsinjana, C. Capelli, G. Biglino, K. S. Mcleod, M. Sermesant, T.-Y. Hsia, S. Schievano and A. M. Taylor
                                                                                                                                                    in 19th Annual Scientific Sessions of the Society for Cardiovascular Magnetic Resonance (SCMR), 2016
                                                                                                                                                  5. Quantitative Measures of Right Ventricular Shape Abnormalities in ARVC Patients
                                                                                                                                                    K. S. Mcleod, S. Wall and J. Saberniak
                                                                                                                                                    in 24th Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2016
                                                                                                                                                  6. Ventricular Shape In TGA Patients Differs Significantly From Controls
                                                                                                                                                    K. S. Mcleod, K. R. Suther, H. Brun, B. Smevik, A. E. Fiane, H. L. Lindberg and E. Hopp
                                                                                                                                                    in American Heart Association Scientific Sessions, 2016
                                                                                                                                                  7. From MR image to patient-specific simulation and population-based analysis:Tutorial for an openly available image-processing pipeline
                                                                                                                                                    M. Marciniak, H. Arevalo, J. Tfelt-Hansen, T. Jespersen, R. Jabbari, C. Glinge, K. A. Ahtarovski, N. Vejlstrup, M. Maleckar and K. S. Mcleod
                                                                                                                                                    in MICCAI Workshop on Statistical Atlases and Cardiac Models of the Heart, 2016
                                                                                                                                                  8. Improving Understanding of Long-Term Cardiac Functional Remodelling via Cross-Sectional Analysis of Polyaffine Motion Parameters
                                                                                                                                                    K. S. Mcleod, M. Sermesant and X. Pennec
                                                                                                                                                    in Functional Imaging and Modelling of the Heart, 2017
                                                                                                                                                  9. A multiple kernel learning framework to investigate the relationship between ventricular fibrillation and first myocardial infarction
                                                                                                                                                    M. Marciniak, H. Arevalo, J. Tfelt-Hansen, K. A. Ahtarovski, T. Jespersen, R. Jabbari, C. Glinge, N. Vejlstrup, T. Engstrom, M. Maleckar and K. S. Mcleod
                                                                                                                                                    in Functional Imaging and Modelling of the Heart, 2017

                                                                                                                                                  Mikael Mortensen

                                                                                                                                                    Articles in International Journals

                                                                                                                                                    1. Conditional Velocity Statistics in the Double Scalar Mixing Layer - a Mapping Closure Approach
                                                                                                                                                      M. Mortensen and S. M. d. B. Kops
                                                                                                                                                      Combustion Theory and Modelling, vol. 12, pp. 929—941, 2008, [DOI]
                                                                                                                                                    2. Derivation of the Conditional Moment Closure Equations for Spray Combustion
                                                                                                                                                      M. Mortensen and R. W. Bilger
                                                                                                                                                      Combustion and Flame, vol. 156, pp. 62—72, 2009, [DOI]
                                                                                                                                                    3. Towards Sensitizing the Nonlinear v^2-f Model to Turbulence Structures
                                                                                                                                                      B. A. P. Reif, M. Mortensen and C. A. Langer
                                                                                                                                                      Flow, Turbulence and Combustion, vol. 83, pp. 185—203, 2009, [DOI]
                                                                                                                                                    4. Assessment of the Finite Volume Method Applied to the V^2 - F Model
                                                                                                                                                      M. Mortensen, B. A. P. Reif and C. E. Wasberg
                                                                                                                                                      International Journal for Numerical Methods in Fluids, vol. 63, pp. 495—516, 2010, [DOI]
                                                                                                                                                    5. A FEniCS-Based Programming Framework for Modeling Turbulent Flow by the Reynolds-Averaged Navier-Stokes Equations
                                                                                                                                                      M. Mortensen, H. P. Langtangen and G. N. Wells
                                                                                                                                                      Advances in Water Resources, vol. 34, pp. 1082—1101, 2011, [DOI]
                                                                                                                                                    6. Direct Numerical Simulation of Transitional Flow in a Patient-Specific Intracranial Aneurysm
                                                                                                                                                      K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                      Journal of Biomechanics, vol. 44, pp. 2826—2832, 2011, [DOI]
                                                                                                                                                    7. Assessment of the presumed mapping function approach for the stationary laminar flamelet modelling of reacting double scalar mixing layers
                                                                                                                                                      A. E. Sayed, M. Mortensen and J. Z. Wen
                                                                                                                                                      Combustion Theory and Modelling, vol. 18, pp. 552—581, 2014, [DOI]
                                                                                                                                                    8. Oasis: A high-level/high-performance open source Navier–Stokes solver
                                                                                                                                                      M. Mortensen and K. Valen-Sendstad
                                                                                                                                                      Computer Physics Communications, vol. 188, pp. 177 — 188, 2015, [DOI]
                                                                                                                                                    9. High Performance Python for Direct Numerical Simulation of Turbulent Flows
                                                                                                                                                      M. Mortensen and H. P. Langtangen
                                                                                                                                                      Computer Physics Communications, vol. 203, pp. 53—65, 2016
                                                                                                                                                    10. Preconditioners for saddle point systems with trace constraints coupling 2D and 1D domains
                                                                                                                                                      M. Kuchta, M. Nordaas, J. C. G. Verschaeve, M. Mortensen and K.-A. Mardal
                                                                                                                                                      SIAM Journal of Scientific Computing, vol. 38, 2016
                                                                                                                                                    11. A numerical investigation of intrathecal drug and gene vector dispersion within the cervical subarachnoid space
                                                                                                                                                      P. T. Haga, G. Pizzichelli, M. Mortensen, M. Kuchta, S. H. Pahlavian, E. Sinibaldi, B. A. Martin and K.-A. Mardal
                                                                                                                                                      Plos One, 2017, [DOI]

                                                                                                                                                    Books

                                                                                                                                                    1. Computational Fluid Dynamics for Engineers
                                                                                                                                                      B. Andersson, R. Andersson, L. Håkansson, M. Mortensen, R. Sudiyo and B. van Wachem
                                                                                                                                                      Cambridge University Press, 2012

                                                                                                                                                    Chapters in Books

                                                                                                                                                    1. Simulation of Transitional Flows
                                                                                                                                                      M. Mortensen, K.-A. Mardal and H. P. Langtangen
                                                                                                                                                      in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 419—438, 2012
                                                                                                                                                    2. A Comparison of Some Common Finite Element Schemes for the Incompressible Navier-Stokes Equations
                                                                                                                                                      K. Valen-Sendstad, A. Logg, K.-A. Mardal, H. Narayanan and M. Mortensen
                                                                                                                                                      in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 395—418, 2012

                                                                                                                                                    Refereed Proceedings

                                                                                                                                                    1. Modelling Adverse Pressure-Gradient Boundary Layers Using the Nonlinear V2f Model in Combinationwith a Structure Based Model
                                                                                                                                                      M. Mortensen, B. A. P. Reif and C. A. Langer
                                                                                                                                                      in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
                                                                                                                                                    2. Implementing a K-E Turbulence Model in the FEniCS Finite Element Programming Environment
                                                                                                                                                      K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
                                                                                                                                                      in MekIT'09.  Fifth  national  conference  on  Computational  Mechanics, 2009
                                                                                                                                                    3. On the Complexity of Stationary Flow in Patient-Specific Aneurysms
                                                                                                                                                      K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                      in MekIT'11 Sixth national conference on Computational Mechanics, 2011
                                                                                                                                                    4. Investigations of Transistional Flows Using Image Based Hemodynamics
                                                                                                                                                      K. Valen-Sendstad, M. Mortensen, K.-A. Mardal, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                      in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                                                                                    5. CBC.RANS - a New Flexible, Programmable Software Framework for Computational Fluid Dynamics
                                                                                                                                                      M. Mortensen, H. P. Langtangen and J. Myhre
                                                                                                                                                      in Sixth national conference on Computational Mechanics (MekIT'11), 2011
                                                                                                                                                    6. A Second Order Fast Sweeping Method for the Eikonal Equation Based on Minimization
                                                                                                                                                      M. Kuchta and M. Mortensen
                                                                                                                                                      in The Nordic Seminar on Computational Mechanics, 2013
                                                                                                                                                    7. Preliminary Study of the Impact of Spinal Cord Nerve Roots and Denticulate Ligaments on Drug Movement in the Cervical Spinal Subarachnoid Space
                                                                                                                                                      M. Mortensen, K.-A. Mardal, B. Martin and S. Pahlavian
                                                                                                                                                      in The Nordic Seminar on Computational Mechanics, 2013
                                                                                                                                                    8. Implementation, verification and validation of large eddy simulation models in Oasis
                                                                                                                                                      J. Bø, A. Bergersen, K. Valen-Sendstad and M. Mortensen
                                                                                                                                                      in MekIT'15 8th National Conference on Computational Mechanics, 2015
                                                                                                                                                    9. A pseudo-spectral study of Kelvin-Helmholtz instability
                                                                                                                                                      D. Darian and M. Mortensen
                                                                                                                                                      in MekIT'15 8th National Conference on Computational Mechanics, 2015
                                                                                                                                                    10. Characterization of the space of rigid motions in arbitrary domains
                                                                                                                                                      M. Kuchta, K.-A. Mardal and M. Mortensen
                                                                                                                                                      in MekIT'15 8th National Conference on Computational Mechanics, 2015
                                                                                                                                                    11. Towards a continuous and discontinuous Galerkin method for multi-phase flows
                                                                                                                                                      T. Landet, M. Mortensen and J. Grue
                                                                                                                                                      in MekIT'15 8th National Conference on Computational Mechanics, 2015
                                                                                                                                                    12. BEND|P|Y: Python framework for computing bending of complex plate-beam systems
                                                                                                                                                      M. Mortensen, M. Kuchta, K.-A. Mardal and J. Verschaeve
                                                                                                                                                      in MekIT'15 8th National Conference on Computational Mechanics, 2015
                                                                                                                                                    13. The Oasis Navier-Stokes Solver: Theory, Accuracy, Applications, and High-Performance Computing Capabilities.
                                                                                                                                                      A. Bergersen, K. Valen-Sendstad and M. Mortensen
                                                                                                                                                      in FEniCS 16, 2016
                                                                                                                                                    14. The FDA Nozzle Benchmark: In Theory There Is No Difference Between Theory and Practice, but in Practice There Is.
                                                                                                                                                      A. Bergersen, M. Mortensen and K. Valen-Sendstad
                                                                                                                                                      in American Society of Mechanical Engineers Summer Biomechanics, Bioengineering and Biotransport Conference, 2016
                                                                                                                                                    15. A Benchmark Standard Model of a Generic Medical Device; All Models Are Wrong, but Some Are Useful.
                                                                                                                                                      A. Bergersen, M. Mortensen and K. Valen-Sendstad
                                                                                                                                                      in 11th International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, 2016

                                                                                                                                                    Conference Proceedings

                                                                                                                                                    1. Flexible Software Tools for Computational Turbulence
                                                                                                                                                      M. Mortensen and H. P. Langtangen
                                                                                                                                                      in Proceedings of the 25th Nordic Seminar on Computational Mechanics (NSCM-25), 2012

                                                                                                                                                    Talks

                                                                                                                                                    1. Implementing a K-E Turbulence Model in the FEniCS Finite Element Programming Environment
                                                                                                                                                      K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
                                                                                                                                                      Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                                    2. The Finite Element Library FEniCS and Simulation of Blood Flow in Cerebral Aneurysms
                                                                                                                                                      K.-A. Mardal, K. Valen-Sendstad, M. S. Alnæs, M. Mortensen, H. P. Langtangen and B. A. P. Reif
                                                                                                                                                      Talk at CSB Seminar, University of Stuttgart, 2011
                                                                                                                                                    3. Computational Cerebral Hemodynamics
                                                                                                                                                      K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                      The Norwegian Defence Research Establishment, 2011
                                                                                                                                                    4. Simulation Methodology for Cerebral Blood Flow
                                                                                                                                                      K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                      Biomedical Simulation Lab, Institute of Biomaterials and Biomedical Engineering at the University of Toronto, 2011
                                                                                                                                                    5. Direct Numerical Simulation of Transitional Flow in Patient-Specific Intracranial Aneurysms
                                                                                                                                                      K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                      ASME 2011 Summer Bioengineering Conference, 2011
                                                                                                                                                    6. 'Turbulence' in Cerebral Aneurysms
                                                                                                                                                      K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, H. P. Langtangen, B. A. P. Reif and D. A. Steinman
                                                                                                                                                      CBC Workshop on Biomechanics, 17-18 November, 2011
                                                                                                                                                    7. Flexible Software Tools for Computational Turbulence
                                                                                                                                                      M. Mortensen
                                                                                                                                                      Keynote talk at the 25th Nordic Seminar on Computational Mechanics, 2012
                                                                                                                                                    8. Flexible Specification of Large Systems of Nonlinear PDEs
                                                                                                                                                      H. P. Langtangen and M. Mortensen
                                                                                                                                                      Keynote talk at the 2nd HPC^3 Workshop on High-Performance Computing, KAUST, Saudi-Arabia, 2012
                                                                                                                                                    9. Preliminary Study of the Impact of Spinal Cord Nerve Roots and Denticulate Ligaments on Drug Movement in the Cervical Spinal Subarachnoid Space
                                                                                                                                                      M. Mortensen
                                                                                                                                                      Nordic Semiar on Computational Mechanics, 2013
                                                                                                                                                    10. FEniCS: a Free Software for the Automated and Efficient Solution of Differential Equations
                                                                                                                                                      M. Mortensen
                                                                                                                                                      University of Waterloo, Department of Mechanical and Mechatronics Engineering, Seminar Series, 2013
                                                                                                                                                    11. FEniCS and Its Application in Biomedical Computing
                                                                                                                                                      M. Mortensen
                                                                                                                                                      Charles University in Prague, Czech Republic, 2013
                                                                                                                                                    12. Cerebrospinal Fluid Flow in Association With the Central Nervous System - Chiari and Drug Delivery
                                                                                                                                                      K.-A. Mardal, K.-H. Støverud, M. Mortensen, K. Jain, B. Martin and S. Pahlavian
                                                                                                                                                      MS on Computational Biomechanics, WCCM-ECCM-ECCOM, 2014
                                                                                                                                                    13. FEniCS - A Free Software Framework for Efficient Solution of Differential Equations, with Applications in Mechanics
                                                                                                                                                      M. Mortensen
                                                                                                                                                      Prague, 2014
                                                                                                                                                    14. Implementation, verification and validation of large eddy simulation models in Oasis
                                                                                                                                                      J. Bø, A. Bergersen, K. Valen-Sendstad and M. Mortensen
                                                                                                                                                      MekIT - Conference on Computational Mechanics - NTNU, Trondheim, Norway, 2015

                                                                                                                                                    Public Outreach

                                                                                                                                                    1. Kan Vi Regne Ut Hvem Som Får Hjerneslag?
                                                                                                                                                      M. Mortensen
                                                                                                                                                      2012

                                                                                                                                                    Oddrun Christin Myklebust

                                                                                                                                                      Conference Proceedings

                                                                                                                                                      1. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
                                                                                                                                                        O. C. Myklebust, S. Hentschel and K.-A. Mardal
                                                                                                                                                        in 21st Nordic Seminar on Computational Mechanics, 2008

                                                                                                                                                      Talks

                                                                                                                                                      1. Patient-Specific Computational Fluid Dynamic Simulations in the Circle of Willis
                                                                                                                                                        O. C. Myklebust, S. Hentschel and K.-A. Mardal
                                                                                                                                                        Invited talk at the 21st Nordic Seminar on Computational Mechanics, Trondheim, October 16-17, 2008
                                                                                                                                                      2. Scientific Computing at Simula
                                                                                                                                                        K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
                                                                                                                                                        Invited Talk at Workshop on Cerebral Aneurysms and Subarachnoidal Hemorrhage, Tromsø Jan 24-26, 2008
                                                                                                                                                      3. Blood Flow Computations at Simula
                                                                                                                                                        K.-A. Mardal, K. Valen-Sendstad, O. C. Myklebust and S. Hentschel
                                                                                                                                                        Invited talk at Medical Physics, University of Wisconsin, March 11., 2008
                                                                                                                                                      4. Patient-Specific Hemodynamics in FEniCS
                                                                                                                                                        K.-A. Mardal, A. Logg, S. Hentschel, O. C. Myklebust and K. Valen-Sendstad
                                                                                                                                                        Presentation at the FEniCS 09 Workshop, 2009

                                                                                                                                                      Tuomo Mäki-Marttunen

                                                                                                                                                        Articles in International Journals

                                                                                                                                                        1. An Evaluation of the Accuracy of Classical Models for Computing the Membrane Potential and Extracellular Potential for Neurons
                                                                                                                                                          A. Tveito, K. H. Jæger, G. T. Lines, Ł. Paszkowski, J. Sundnes, A. Edwards, T. Mäki-Marttunen, G. Halnes and G. T. Einevoll
                                                                                                                                                          Frontiers in Computational Neuroscience, vol. 11, pp. 27, 2017

                                                                                                                                                        Harish Narayanan

                                                                                                                                                          Articles in International Journals

                                                                                                                                                          1. The Micromechanics of Fluid-Solid Interactions During Growth in Porous Soft Biological Tissue
                                                                                                                                                            H. Narayanan, E. M. Arruda, K. Grosh and K. Garikipati
                                                                                                                                                            Biomechanics and Modeling in Mechanobiology, vol. 8, pp. 167—181, 2009, [DOI]

                                                                                                                                                          Chapters in Books

                                                                                                                                                          1. A Comparison of Some Common Finite Element Schemes for the Incompressible Navier-Stokes Equations
                                                                                                                                                            K. Valen-Sendstad, A. Logg, K.-A. Mardal, H. Narayanan and M. Mortensen
                                                                                                                                                            in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 395—418, 2012
                                                                                                                                                          2. A Computational Framework for Nonlinear Elasticity
                                                                                                                                                            H. Narayanan
                                                                                                                                                            in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 527—544, 2012

                                                                                                                                                          Refereed Proceedings

                                                                                                                                                          1. Experimental and Computational Investigation of Viscoelasticity of Native and Engineered Ligament and Tendon
                                                                                                                                                            J. Ma, H. Narayanan, K. Garikipati, K. Grosh and E. M. Arruda
                                                                                                                                                            in Cellular, Molecular and Tissue Mechanics, 2010

                                                                                                                                                          Conference Proceedings

                                                                                                                                                          1. Collaborative Computational Frameworks and the Growth Problem
                                                                                                                                                            H. Narayanan, K. Garikipati and A. Logg
                                                                                                                                                            in The mathematics of growth and remodelling of soft biological tissues, 2008

                                                                                                                                                          Talks

                                                                                                                                                          1. The Numerical Implications of Multi-Phasic Mechanics Assumptions Underlying Growth Models
                                                                                                                                                            H. Narayanan, K. Garikipati, K. Grosh and E. M. Arruda
                                                                                                                                                            Talk at the Ninth U.S. National Congress on Computational Mechanics, San Fransisco, California, 2007
                                                                                                                                                          2. Reshaping Tumour Growth
                                                                                                                                                            H. Narayanan
                                                                                                                                                            Talk at the 2007 University of Michigan Engineering Graduate Student Symposium, Ann Arbor, Michigan, 2007
                                                                                                                                                          3. Toward a Goal-Oriented Error-Controlled Solver for the Incompressible Navier-Stokes Equations
                                                                                                                                                            H. Narayanan
                                                                                                                                                            Talk at the 2008 Robust Flow Solver Workshop at Simula Research Laboratory, Oslo, Norway, 2008
                                                                                                                                                          4. The Role of K+ Channels in Human Articular Chondrocyte Electrophysiology: a Computational Perspective
                                                                                                                                                            H. Narayanan
                                                                                                                                                            CaMo Seminar, Oslo, Norway, 2011
                                                                                                                                                          5. A Continuum Model for Active Cardiac Muscle
                                                                                                                                                            J. Sundnes and H. Narayanan
                                                                                                                                                            World congress on Computational Mechanics, Barcelona, Spain, 2014

                                                                                                                                                          Valeriya Naumova

                                                                                                                                                            Articles in International Journals

                                                                                                                                                            1. Extrapolation in variable RKHSs with application to the blood glucose reading
                                                                                                                                                              V. Naumova, S. V. Pereverzyev and S. Sampath
                                                                                                                                                              Inverse Problems, vol. 27, pp. 075010, 2011
                                                                                                                                                            2. Parameter Choice Strategies for Multi-Penalty Regularization
                                                                                                                                                              V. Naumova, M. Fornasier and S. V. Pereverzyev
                                                                                                                                                              SIAM Journal on Numerical Analysis, vol. 52, pp. 1770—1794, 2014, [DOI]
                                                                                                                                                            3. Minimization of Multi-Penalty Functionals by Alternating Iterative Thresholding and Optimal Parameter Choices
                                                                                                                                                              V. Naumova and S. Peter
                                                                                                                                                              Inverse Problems, vol. 30, pp. 1—35, 2014, [DOI]
                                                                                                                                                            4. Regularized collocation for spherical harmonics gravitational field modeling
                                                                                                                                                              V. Naumova, S. V. Pereverzyev and P. Tkachenko
                                                                                                                                                              GEM - International Journal on Geomathematics, vol. 5, pp. 81—98, 2014
                                                                                                                                                            5. Conditions on optimal support recovery in unmixing problems by means of multi-penalty regularization
                                                                                                                                                              M. Grasmair and V. Naumova
                                                                                                                                                              Inverse Problems, vol. 32, 2016, [DOI]

                                                                                                                                                            Chapters in Books

                                                                                                                                                            1. Granger Causality for Ill-Posed Problems: Ideas, Methods, and Application in Life Sciences
                                                                                                                                                              V. Naumova, K. Hlavackova-Schindler and S. V. Pereverzyev
                                                                                                                                                              in Statistics and Causality: Methods for Applied Empirical Research, Edited by W. Wiedermann and A. von Eye, John Wiley & Sons Limited Wiley, pp. 1—41, 2015
                                                                                                                                                            2. Meta-Learning Based Blood Glucose Predictor for Diabetic Smartphone App
                                                                                                                                                              V. Naumova, L. Nita, J. Poulsen and S. V. Pereverzyev
                                                                                                                                                              in Prediction Methods for Blood Glucose Concentration. Lecture Notes in Bioengineering., Springer International Publishing, pp. 93—105, 2016
                                                                                                                                                            3. Multi-penalty regularization for detecting relevant variables
                                                                                                                                                              K. Hlavackova-Schindler, V. Naumova and S. V. Pereverzyev
                                                                                                                                                              in Recent Applications of Harmonic Analysis to Function Spaces, Differential Equations, and Data Science, Edited by I. Pesenson, Springer International Publishing, 2017

                                                                                                                                                            Refereed Proceedings

                                                                                                                                                            1. Dictionary Learning from Incomplete Data for Efficient Image Restoration
                                                                                                                                                              V. Naumova and K. Schnass
                                                                                                                                                              in EUSIPCO, 2017

                                                                                                                                                            Talks

                                                                                                                                                            1. Meta-Learning Approach to the Image Denoising Problem
                                                                                                                                                              V. Naumova
                                                                                                                                                              SIAM Conference on Imaging Science, 2014
                                                                                                                                                            2. Minimization of Multi-Penalty Functionals by Alternating Iterative Thresholding and Optimal Parameter Choices
                                                                                                                                                              V. Naumova
                                                                                                                                                              SIAM Conference on Uncertainty Quantification, 2014
                                                                                                                                                            3. Meta-Learning Based Blood Glucose Predictor for Diabetic Smartphone App
                                                                                                                                                              V. Naumova
                                                                                                                                                              Workshop on Design, use and evaluation of prediction methods for blood glucose concentration, 2014
                                                                                                                                                            4. Autumn School on Mathematical Imaging and Statistical Learning
                                                                                                                                                              V. Naumova
                                                                                                                                                              University of Verona, 2014
                                                                                                                                                            5. Numerical Methods for Diabetes Technology
                                                                                                                                                              V. Naumova
                                                                                                                                                              UCSD, 2014
                                                                                                                                                            6. Multi-penalty Regularization for High-Dimensional Data Learning
                                                                                                                                                              V. Naumova
                                                                                                                                                              UCSD, 2014
                                                                                                                                                            7. Innovative solution of unmixing problems by means of multi-penalty regularization: theoretical and algorithmical aspects
                                                                                                                                                              V. Naumova
                                                                                                                                                              University of Graz, 2016
                                                                                                                                                            8. Dictionary Learning from Incomplete Data
                                                                                                                                                              V. Naumova
                                                                                                                                                              2016 SIAM Conference on Imaging Science, 2016
                                                                                                                                                            9. From Big Data to Big Insights
                                                                                                                                                              V. Naumova
                                                                                                                                                              EUMLS Final Conference, 2016
                                                                                                                                                            10. Image separation using multi-penalty regularization
                                                                                                                                                              V. Naumova
                                                                                                                                                              CEA Saclay, France, 2017
                                                                                                                                                            11. Advanced statistics and data analysis for blood glucose prediction and diabetes
                                                                                                                                                              V. Naumova
                                                                                                                                                              Universitäres Herzzentrum Hamburg, 2017
                                                                                                                                                            12. Innovative solution of unmixing problems by means of multi-penalty regularization
                                                                                                                                                              V. Naumova
                                                                                                                                                              Applied Inverse Problems, Hangzhou, China, 2017

                                                                                                                                                            Posters

                                                                                                                                                            1. Meta-Learning Based Blood Glucose Predictor for Diabetic Smartphone App
                                                                                                                                                              V. Naumova, S. V. Pereverzyev, L. Nita and J. Poulsen
                                                                                                                                                              2014

                                                                                                                                                            Bjørn Fredrik Nielsen

                                                                                                                                                              Articles in International Journals

                                                                                                                                                              1. Optimal Monodomain Approximations of the Bidomain Equations
                                                                                                                                                                B. F. Nielsen, T. S. Ruud, G. T. Lines and A. Tveito
                                                                                                                                                                Applied Mathematics and Computation, vol. 184, pp. 276—290, 2007
                                                                                                                                                              2. An Order Optimal Solver for the Discretized Bidomain Equations
                                                                                                                                                                K.-A. Mardal, B. F. Nielsen, X. Cai and A. Tveito
                                                                                                                                                                Numerical Linear Algebra with Applications, vol. 14, pp. 83—98, 2007
                                                                                                                                                              3. A Linear System of Partial Differential Equations Modeling the Resting Potential of a Heart With Regional Ischemia
                                                                                                                                                                M. C. MacLachlan, J. Sundnes, O. Skavhaug, O. M. Lysaker, B. F. Nielsen and A. Tveito
                                                                                                                                                                Mathematical Biosciences, vol. 210, pp. 238—252, 2007
                                                                                                                                                              4. On the Possibility for Computing the Transmembrane Potential in the Heart With a One Shot Method; an Inverse Problem
                                                                                                                                                                B. F. Nielsen, X. Cai and O. M. Lysaker
                                                                                                                                                                Mathematical Biosciences, vol. 210, pp. 523—553, 2007
                                                                                                                                                              5. A Note on the Efficiency of the Conjugate Gradient Method for a Class of Time-Dependent Problems
                                                                                                                                                                X. Cai, B. F. Nielsen and A. Tveito
                                                                                                                                                                Numerical Linear Algebra with Applications, vol. 14, pp. 459—467, 2007
                                                                                                                                                              6. On the Use of the Resting Potential and Level Set Methods for Identifying Ischemic Heart Disease; an Inverse Problem
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker and A. Tveito
                                                                                                                                                                Journal of Computational Physics, vol. 220, pp. 772—790, 2007
                                                                                                                                                              7. Penalty Methods for the Numerical Solution of American Multi-Asset Option Problems
                                                                                                                                                                B. F. Nielsen, O. Skavhaug and A. Tveito
                                                                                                                                                                Journal of Computational and Applied Mathematics, vol. 222, pp. 3—16, 2008
                                                                                                                                                              8. Preconditioning by Inverting the Laplacian; an Analysis of the Eigenvalues
                                                                                                                                                                B. F. Nielsen, A. Tveito and W. Hackbusch
                                                                                                                                                                IMA Journal of Numerical Analysis, vol. 29, pp. 24—42, 2009
                                                                                                                                                              9. The Multigrid Algorithm Applied to a Degenerate Equation; a Convergence Analysis
                                                                                                                                                                A. A. V´zquez and B. F. Nielsen
                                                                                                                                                                Journal of Computational and Applied Mathematics, vol. 225, pp. 251—267, 2009
                                                                                                                                                              10. A Computationally Efficient Method for Determining the Size and Location of Myocardial Ischemia
                                                                                                                                                                T. S. Ruud, B. F. Nielsen, O. M. Lysaker and J. Sundnes
                                                                                                                                                                IEEE Transactions on Biomedical Engineering, vol. 56, pp. 263—272, 2009
                                                                                                                                                              11. Stability Analysis of the Inverse Transmembrane Potential Problem in Electrocardiography
                                                                                                                                                                M. Burger, K.-A. Mardal and B. F. Nielsen
                                                                                                                                                                Inverse Problems, vol. 26, 2010, [DOI]
                                                                                                                                                              12. Efficient Preconditioners for Optimality Systems Arising in Connection With Inverse Problems
                                                                                                                                                                B. F. Nielsen and K.-A. Mardal
                                                                                                                                                                SIAM Journal on Control and Optimization, vol. 48, 2010, [DOI]
                                                                                                                                                              13. Analysis of the Minimal Residual Method Applied to Ill-Posed Optimality Systems
                                                                                                                                                                B. F. Nielsen and K.-A. Mardal
                                                                                                                                                                SIAM Journal on Scientific Computing, vol. 35, pp. A785—A814, 2013
                                                                                                                                                              14. Computing Ischemic Regions in the Heart With the Bidomain Model; First Steps Towards Validation
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker and P. Grøttum
                                                                                                                                                                IEEE Transactions on Medical Imaging, vol. 32, pp. 1085—1096, 2013
                                                                                                                                                              15. The Split Bregman Algorithm Applied to PDE-Constrained Optimization Problems With Total Variation Regularization
                                                                                                                                                                O. L. Elvetun and B. F. Nielsen
                                                                                                                                                                Computational Optimization and Applications, vol. 63, pp. 1—26, 2016
                                                                                                                                                              16. Ill-posed Point Neuron Models
                                                                                                                                                                B. F. Nielsen and J. Wyller
                                                                                                                                                                The Journal of Mathematical Neuroscience, vol. 6, 2016, [DOI]
                                                                                                                                                              17. PDE-constrained optimization with local control and boundary observations: Robust preconditioners
                                                                                                                                                                O. L. Elvetun and B. F. Nielsen
                                                                                                                                                                SIAM Journal on Scientific Computing, vol. 38, pp. A3461—A3491, 2016, [DOI]
                                                                                                                                                              18. Robust preconditioners for PDE-constrained optimization with limited observations
                                                                                                                                                                K.-A. Mardal, B. F. Nielsen and M. Nordaas
                                                                                                                                                                BIT Numerical Mathematics, 2016

                                                                                                                                                              Books

                                                                                                                                                              1. Elements of Scientific Computing
                                                                                                                                                                A. Tveito, H. P. Langtangen, B. F. Nielsen and X. Cai
                                                                                                                                                                Springer, 2010

                                                                                                                                                              Chapters in Books

                                                                                                                                                              1. Can ECG Recordings and Mathematics Tell the Condition of Your Heart?
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker, P. Grøttum, K.-A. Mardal, A. Tveito, C. Tarrou, K. Haugaa, A. Abildgaard and J. G. Fjeld
                                                                                                                                                                in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 287—319, 2009

                                                                                                                                                              Refereed Proceedings

                                                                                                                                                              1. Mathematical Based Imaging of Regional Ischemia
                                                                                                                                                                O. M. Lysaker, B. F. Nielsen, P. Grøttum, K. Haugaa, J. G. Fjeld and A. Abildgaard
                                                                                                                                                                in World Congress on Medical Physics and Biomedical Engineering, 2009
                                                                                                                                                              2. On the Performance of an Algebraic Multigrid Preconditioner for the Pressure Equation With Highly Discontinuous Media
                                                                                                                                                                J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
                                                                                                                                                                in MekIT'09.  Fifth  national  conference  on  Computational  Mechanics, 2009
                                                                                                                                                              3. On the Use of the Bidomain Model for Computing the Position and Size of Ischemic Regions; a Validation Study
                                                                                                                                                                O. M. Lysaker, B. F. Nielsen and P. Grøttum
                                                                                                                                                                in Computing in Cardiology, 2012
                                                                                                                                                              4. Computing Ischemic Regions in the Heart: on the Use of Internal Electrodes
                                                                                                                                                                O. M. Lysaker, B. F. Nielsen and S. Wall
                                                                                                                                                                in Computing in Cardiology Conference (CinC), 2013
                                                                                                                                                              5. Bidomain Simulations of Subendocardial Ischemia: the Forward and Inverse Problems
                                                                                                                                                                O. M. Lysaker, B. F. Nielsen and S. Wall
                                                                                                                                                                in Computing in Cardiology Conference, 2014

                                                                                                                                                              Talks

                                                                                                                                                              1. Inverse Solutions for Assesing Myocardial Ischemia
                                                                                                                                                                B. F. Nielsen
                                                                                                                                                                Talk at CBC, Seminar on Electrophysiology Modeling, Simula, 2007
                                                                                                                                                              2. Can Inverse Problems Tell You the Condition of Your Heart?
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker and M. G. Larson
                                                                                                                                                                Zurich Intelligencer; International Congress on Industrial and Applied Mathematics (ICIAM), Springer-Verlag, 2007
                                                                                                                                                              3. PDE Methods for Identifying Ischemic Heart Disease
                                                                                                                                                                O. M. Lysaker and B. F. Nielsen
                                                                                                                                                                Presented at the 6th International Congress on Industrial and Applied Mathematics, 2007
                                                                                                                                                              4. On the Use of Computer Simulations for Identifying Ischemic Heart Disease; Theoretical and Practical Aspects
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. Haugaa
                                                                                                                                                                Presented at the workshop Mathematics in Medicine/Biology, Centre of Mathematics for Applications, Department of Mathematics, University of Oslo, 2008
                                                                                                                                                              5. Computer Simulations for Identifying Ischemic Heart Disease; a Validation Study
                                                                                                                                                                O. M. Lysaker, B. F. Nielsen, P. Grøttum, A. Abildgaard, J. Fjeld and K. Haugaa
                                                                                                                                                                Presented at the BBG-MedViz seminar at the Department of Mathematics, University of Bergen, 2008
                                                                                                                                                              6. Theoretical and Practical Aspects of the Inverse Problem of Electrocardiography
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. Haugaa
                                                                                                                                                                Presented at Institut für Mathematik und Wissenschaftliches Rechnen, Karl Franzes Universität in Graz, Austria. Also presented at Institut für Numerische und Angewandte Mathematik, Westfälische Wilhelms-Universität Münster, Germany, 2008
                                                                                                                                                              7. Theoretical and Practical Aspects of the Inverse Problem of Electrocardiography
                                                                                                                                                                O. M. Lysaker, B. F. Nielsen, P. Grøttum, A. Abildgaard, J. Fjeld and K. Haugaa
                                                                                                                                                                Presented at the Fourth International Conference Inverse Problems: Modeling and Simulation, Turkey, 2008
                                                                                                                                                              8. The Inverse Problem of Identifying Ischemic Heart Disease
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. Haugaa
                                                                                                                                                                Presented at the annual meeting of European Cardiac Simulation Group, Bologna, Italy, 2008
                                                                                                                                                              9. Two Steps Towards Automating Efficient Solution of Inverse Problems
                                                                                                                                                                K.-A. Mardal, B. F. Nielsen and M. S. Alnæs
                                                                                                                                                                Invited Talk at the FEniCS 08 Workshop, March 5-7,Baton Rouge, Louisiana, 2008
                                                                                                                                                              10. Modelling, Mathematical Properties and Validation of the Inverse Ischemia Problem
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, K. Haugaa, A. Abildgaard, J. G. Fjeld and M. Burger
                                                                                                                                                                Presented at the Bidomain Workshop, Graz, Austria, 2009
                                                                                                                                                              11. Preconditioning in Inverse Problems
                                                                                                                                                                M. Burger and B. F. Nielsen
                                                                                                                                                                Minisymposium at the Applied Inverse Problems conference, Vienna, Austria, 2009
                                                                                                                                                              12. The Inverse Ischemia Problem; Mathematical Models and Validation
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker, P. Grøttum, K. Haugaa, J. G. Fjeld and A. Abildgaard
                                                                                                                                                                Presented at the Applied Inverse Problems conference, Vienna, Austria, 2009
                                                                                                                                                              13. An Operator Theoretical Approach to Preconditioning Optimality Systems
                                                                                                                                                                B. F. Nielsen and K.-A. Mardal
                                                                                                                                                                Presented at the Applied Inverse Problems conference, Vienna, Austria, 2009
                                                                                                                                                              14. Recent Contributions to the Inverse Problem of Electrocardiography
                                                                                                                                                                B. F. Nielsen
                                                                                                                                                                Minisymposium at the Applied Inverse Problems conference, Vienna, Austria, 2009
                                                                                                                                                              15. On the Perfermance of an Algebraic Multigrid Preconditioner for the Pressure Equationwith Highly Discontinuous Media
                                                                                                                                                                J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
                                                                                                                                                                Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                                              16. Theoretical and Practical Aspects of the Inverse Ischemia Problem
                                                                                                                                                                B. F. Nielsen, O. M. Lysaker and P. Grøttum
                                                                                                                                                                Presented at Karlsruhe Institute of Technology, Germany, 2010
                                                                                                                                                              17. Efficient Preconditioning of Optimality Systems
                                                                                                                                                                K.-A. Mardal and B. F. Nielsen
                                                                                                                                                                Precond 11, 2011
                                                                                                                                                              18. The Minimal Residual Method Applied to Ill-Posed Optimality Systems; Eigenvalues and Convergence Properties
                                                                                                                                                                B. F. Nielsen and K.-A. Mardal
                                                                                                                                                                Numerical Methods for Optimal Control and Inverse Problems workshop, Munich, Germany, 2012
                                                                                                                                                              19. Efficient Preconditioning of Optimality Systems
                                                                                                                                                                K.-A. Mardal, B. F. Nielsen and M. S. Alnæs
                                                                                                                                                                EMG 2012, 2012
                                                                                                                                                              20. PDE-Constrained Optimization Problems With Box Constraints
                                                                                                                                                                O. L. Elvetun and B. F. Nielsen
                                                                                                                                                                International Conference on Preconditioning Techniques for Scientific and Industrial Applications, Oxford, 2013
                                                                                                                                                              21. Computing Ischemic Regions in the Heart: on the Use of Internal Electrodes
                                                                                                                                                                O. M. Lysaker, B. F. Nielsen and S. Wall
                                                                                                                                                                Computing in Cardiology, 2013
                                                                                                                                                              22. Observability of Ischemia and the Need for Patient Specific Geometrical Models in Inverse ECG
                                                                                                                                                                G. T. Lines, O. M. Lysaker and B. F. Nielsen
                                                                                                                                                                Computing in Cardiology, Zaragoza, Spain, 2013
                                                                                                                                                              23. Efficient Preconditioning of Optimality Systems With Non-Self-Adjoint State Operators
                                                                                                                                                                K.-A. Mardal and B. F. Nielsen
                                                                                                                                                                IFIP 2013, minisymposia Preconditioning for PDE-Constrained Optimization, Linz, Austria, 2013

                                                                                                                                                              Posters

                                                                                                                                                              1. PDE-Constrained Optimization Problems With Box Constraints; Effective Solution and Real World Applications
                                                                                                                                                                O. L. Elvetun and B. F. Nielsen
                                                                                                                                                                2013

                                                                                                                                                              Public Outreach

                                                                                                                                                              1. Funding: Deutscher Akademischer Austauschdienst Programme Des Projektbezogenen Personenaustauschs DAADppp Mobility Programme Germany-Norway
                                                                                                                                                                M. Burger and B. F. Nielsen
                                                                                                                                                                2012

                                                                                                                                                              Marcus Noack

                                                                                                                                                                Articles in International Journals

                                                                                                                                                                1. Fast Computation of Eikonal and Transport Equations on GPU Computer Architectures
                                                                                                                                                                  M. Noack and T. Gillberg
                                                                                                                                                                  Geophysics, vol. 80, 2015
                                                                                                                                                                2. A Two-Scale Method using a List of Active Sub-Domains for a Fully Parallelized Solution of Wave Equations
                                                                                                                                                                  M. Noack
                                                                                                                                                                  Journal of Computational Science, vol. 11, pp. 91—101, 2015
                                                                                                                                                                3. Hybrid Genetic Deflated Newton Method for Global Optimisation
                                                                                                                                                                  M. Noack and S. W. Funke
                                                                                                                                                                  Journal of Computational and Applied Mathematics, 2017, [DOI]

                                                                                                                                                                Refereed Proceedings

                                                                                                                                                                1. Fast Sweeping vs. Fast Marching for Eikonal Methods of Electrophysiology - A Potential for Significantly More Efficient Computation?
                                                                                                                                                                  K. S. Mcleod, S. Wall and M. Noack
                                                                                                                                                                  in Cardiac Physiome Workshop, Auckland, New Zealand, 2015

                                                                                                                                                                Theses

                                                                                                                                                                1. New Theoretical and Numerical Methods for Wave-Motion Modeling and Optimization
                                                                                                                                                                  M. Noack
                                                                                                                                                                  Ph.D. Thesis, The Faculty of Mathematics and Natural Sciences, University of Oslo, 2017

                                                                                                                                                                Talks

                                                                                                                                                                1. Fast and accurate Solutions of the Eikonal and Transport Equations
                                                                                                                                                                  M. Noack, T. Gillberg and S. Clark
                                                                                                                                                                  Amsterdam, 2014

                                                                                                                                                                Magne Nordaas

                                                                                                                                                                  Articles in International Journals

                                                                                                                                                                  1. Preconditioners for saddle point systems with trace constraints coupling 2D and 1D domains
                                                                                                                                                                    M. Kuchta, M. Nordaas, J. C. G. Verschaeve, M. Mortensen and K.-A. Mardal
                                                                                                                                                                    SIAM Journal of Scientific Computing, vol. 38, 2016
                                                                                                                                                                  2. Robust preconditioners for PDE-constrained optimization with limited observations
                                                                                                                                                                    K.-A. Mardal, B. F. Nielsen and M. Nordaas
                                                                                                                                                                    BIT Numerical Mathematics, 2016
                                                                                                                                                                  3. Variational data assimilation for transient blood flow simulations
                                                                                                                                                                    S. W. Funke, M. Nordaas, Ø. Evju, M. S. Alnæs and K.-A. Mardal
                                                                                                                                                                    Accepted for publication in International Journal for Numerical Methods in Biomedical Engineering, 2017

                                                                                                                                                                  Theses

                                                                                                                                                                  1. Operator preconditioning for PDE-constrained optimisation and multiscale problems
                                                                                                                                                                    M. Nordaas
                                                                                                                                                                    Ph.D. Thesis, 2017

                                                                                                                                                                  Talks

                                                                                                                                                                  1. Robust Preconditioners for PDE-Constrained Optimization With Limited Observations
                                                                                                                                                                    M. Nordaas
                                                                                                                                                                    European Multigrid Conference 2014, 2014
                                                                                                                                                                  2. PDE-Constrained Optimisation in Hilbert Spaces
                                                                                                                                                                    S. W. Funke and M. Nordaas
                                                                                                                                                                    FEniCS'14 workshop, Paris, 2014
                                                                                                                                                                  3. Variational data assimilation for blood flow simulations
                                                                                                                                                                    K.-A. Mardal, S. W. Funke, M. Nordaas, Ø. Evju and M. S. Alnæs
                                                                                                                                                                    MS at SIAM UQ, Zurich, 2016

                                                                                                                                                                  Kristian B. Oelgaard

                                                                                                                                                                    Articles in International Journals

                                                                                                                                                                    1. Automated Code Generation for Discontinuous Galerkin Methods
                                                                                                                                                                      K. B. Oelgaard, A. Logg and G. N. Wells
                                                                                                                                                                      SIAM Journal on Scientific Computing, vol. 31, pp. 849—864, 2008

                                                                                                                                                                    Conference Proceedings

                                                                                                                                                                    1. Automated Computational Modelling for Solid Mechanics
                                                                                                                                                                      K. B. Oelgaard, G. N. Wells and A. Logg
                                                                                                                                                                      in IUTAM Symposium on Theoretical, Modelling and Computational Aspects of Inelastic Media, 2008

                                                                                                                                                                    Bernardo Lino "de Oliveira"

                                                                                                                                                                      Articles in International Journals

                                                                                                                                                                      1. Aproaching Cardiac Modeling Challenges to Computer Science With CellMl-Based Web Tools
                                                                                                                                                                        R. S. Campos, R. M. Amorim, C. M. Costa, B. L. de Oliveira, C. Barbosa, J. Sundnes and R. W. d. Santos
                                                                                                                                                                        Future Generation Computer Systems, vol. 26, pp. 462—470, 2009
                                                                                                                                                                      2. Effects of Deformation on Transmural Dispersion of Repolarization Using in Silico Models of Human Left Ventricular Wedge
                                                                                                                                                                        B. L. de Oliveira, L. P. d. S. Barra, E. M. Toledo, J. Sundnes and R. W. d. Santos
                                                                                                                                                                        International Journal for Numerical Methods in Biomedical Engineering, vol. 29, pp. 1323—1337, 2013
                                                                                                                                                                      3. Increased Membrane Capacitance Is the Dominant Mechanism of Stretch-Dependent Conduction Slowing in the Rabbit Heart: a Computational Study
                                                                                                                                                                        B. L. de Oliveira, J. Sundnes, S. Wall and A. D. McCulloch
                                                                                                                                                                        Cellular and Molecular Bioengineering, vol. 8, pp. 237—246, 2015
                                                                                                                                                                      4. Simple T wave metrics may better predict early ischemia as compared to ST segment
                                                                                                                                                                        G. T. Lines, B. L. de Oliveira, O. Skavhaug and M. Maleckar
                                                                                                                                                                        IEEE Transactions on Biomedical Engineering, 2016, [DOI]
                                                                                                                                                                      5. A Biophysical Systems Approach to Identifying the Pathways of Acute and Chronic Doxorubicin Mitochondrial Cardiotoxicity
                                                                                                                                                                        B. L. de Oliveira and S. A. Niederer
                                                                                                                                                                        PLoS Computational Biology, vol. 12, 2016, [DOI]
                                                                                                                                                                      6. The opportunities and challenges for biophysical modelling of adverse and beneficial drug actions on the heart
                                                                                                                                                                        S. Niederer, B. L. de Oliveira and M. J. Curtis
                                                                                                                                                                        Current Opinion in Systems Biology, 2017, [DOI]

                                                                                                                                                                      Refereed Proceedings

                                                                                                                                                                      1. A Two Dimensional Model of Coupled Electromechanics in Cardiac Tissue
                                                                                                                                                                        B. M. Rocha, B. L. de Oliveira, R. W. d. Santos, E. T. Magalhães, L. P. d. S. Barra and J. Sundnes
                                                                                                                                                                        in Proceedings of the World Congress on Medical Physics and Biomedical Engineering, 2009
                                                                                                                                                                      2. The Development of a New Computational Model for the Electromechanics of the Human Myocyte
                                                                                                                                                                        B. L. de Oliveira, J. Sundnes and R. W. d. Santos
                                                                                                                                                                        in 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2010
                                                                                                                                                                      3. 3D Heart Modeling With Cellular Automata, Mass-Spring System and CUDA
                                                                                                                                                                        R. S. Campos, R. M. Amorim, B. L. de Oliveira, J. Sundnes, L. P. d. S. Barra, M. Lobosco and R. W. d. Santos
                                                                                                                                                                        in Parallel computing technologies, 2013
                                                                                                                                                                      4. Computational models of doxorubicin mitochondria cardiotoxicity
                                                                                                                                                                        B. L. de Oliveira
                                                                                                                                                                        in Journal of Pharmacological and Toxicological Methods, 2016
                                                                                                                                                                      5. Comparison of tetrahedral and hexahedral meshes for finite element simulation of cardiac electro-mechanics
                                                                                                                                                                        B. L. de Oliveira
                                                                                                                                                                        in VII European Congress on Computational Methods in Applied Sciences and Engineering, 2016

                                                                                                                                                                      Theses

                                                                                                                                                                      1. Computational models of Cardiac Electromechanics
                                                                                                                                                                        B. L. de Oliveira
                                                                                                                                                                        Ph.D. Thesis, University of Oslo, 2014

                                                                                                                                                                      Talks

                                                                                                                                                                      1. Patient-Specific Models of Cardiac Electro-Mechanics
                                                                                                                                                                        J. Sundnes, S. Wall, S. U. Gjerald, J. E. Hake and B. L. de Oliveira
                                                                                                                                                                        Federal University of Juiz de Fora, 2013
                                                                                                                                                                      2. Patient Specific Models of Cardiac Electro-Mechanics
                                                                                                                                                                        J. Sundnes, S. Wall, S. U. Gjerald, J. E. Hake and B. L. de Oliveira
                                                                                                                                                                        Seminar at Ecole des Mines, St Etienne, France, 2014
                                                                                                                                                                      3. Computational Models of Electro-Mechanical Interactions in the Heart
                                                                                                                                                                        J. Sundnes, S. Wall, S. Pezzuto, J. E. Hake and B. L. de Oliveira
                                                                                                                                                                        Invited mini symposium presentation at the European Conference for Mathematics in Industry, Taormina, Italy., 2014
                                                                                                                                                                      4. Modelling the Mitochondrial Cardiotoxicity of Chemeotherapy
                                                                                                                                                                        B. L. de Oliveira
                                                                                                                                                                        Federal University of Juiz de Fora, 2016
                                                                                                                                                                      5. A Computational Model for the Identification of Atrial Stunning Pathways
                                                                                                                                                                        B. L. de Oliveira and J. Sundnes
                                                                                                                                                                        2017 EMI International Conference, 2017

                                                                                                                                                                      Harald Osnes

                                                                                                                                                                        Articles in International Journals

                                                                                                                                                                        1. Experimental and Analytical Strength Analysis of Double-Lap Joints for Marine Applications
                                                                                                                                                                          H. Osnes and D. McGeorge
                                                                                                                                                                          Composites Part B: Engineering, vol. 40, pp. 29—40, 2009
                                                                                                                                                                        2. Efficient Block Preconditioners for the Coupled Equations of Pressure and Deformation in Highly Discontinuous Media
                                                                                                                                                                          J. B. Haga, H. Osnes and H. P. Langtangen
                                                                                                                                                                          International Journal for Numerical and Analytical Methods in Geomechanics, vol. 35, pp. 1466—1482, 2011, [DOI]
                                                                                                                                                                        3. Uncertainty Analysis of Ventricular Mechanics Using the Probabilistic Collocation Method
                                                                                                                                                                          H. Osnes and J. Sundnes
                                                                                                                                                                          IEEE Transactions on Biomedical Engineering, vol. 59, pp. 2171—2179, 2012
                                                                                                                                                                        4. Improved Discretisation and Linearisation of Active Tension in Strongly Coupled Cardiac Electro-Mechanics Simulations
                                                                                                                                                                          J. Sundnes, S. Wall, H. Osnes, T. Thorvaldsen and A. D. McCulloch
                                                                                                                                                                          Computer Methods in Biomechanics and Biomedical Engineering, vol. 17, pp. 604—15, 2014

                                                                                                                                                                        Refereed Proceedings

                                                                                                                                                                        1. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow and Heat Transfer in Sedimentary Basins
                                                                                                                                                                          J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                                                                                                                                                                          in MekIT'07. Fourth National Conference on Computational Mechanics, 2007
                                                                                                                                                                        2. Uncertainty Analysis of the Mechanics of the Heart
                                                                                                                                                                          H. Osnes, S. Clark and J. Sundnes
                                                                                                                                                                          in Proceedings of the Twenty Second Nordic Seminar on Computational Mechanics, 2009
                                                                                                                                                                        3. Numerical Simulation of Low-Velocity Impact Loading of Polymeric Materials
                                                                                                                                                                          H. Daiyan, F. Grytten, E. Andreassen, O. V. Lyngstad, H. Osnes, R. Gaarder and E. Hinrichsen
                                                                                                                                                                          in The 7th European LS-DYNA Conference, 2009
                                                                                                                                                                        4. On the Performance of an Algebraic Multigrid Preconditioner for the Pressure Equation With Highly Discontinuous Media
                                                                                                                                                                          J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
                                                                                                                                                                          in MekIT'09.  Fifth  national  conference  on  Computational  Mechanics, 2009

                                                                                                                                                                        Technical Reports

                                                                                                                                                                        1. Mohr-Coulomb Stress in the Code for Deformation and Heat Flow in Sedimentary Basins
                                                                                                                                                                          H. Osnes
                                                                                                                                                                          Simula Research Laboratory, 2007
                                                                                                                                                                        2. PhD: Simulation of Deformation and Heat Flow in Sedimentary Basins
                                                                                                                                                                          J. B. Haga, H. Osnes, H. P. Langtangen and A. M. Bruaset
                                                                                                                                                                          Simula, 2007

                                                                                                                                                                        Talks

                                                                                                                                                                        1. Parallelisation and Numerical Performance of a 3D Model for Coupled Deformation, Fluid Flow, and Heat Transport in Porous Geological Formations
                                                                                                                                                                          J. B. Haga, A. M. Bruaset, X. Cai, H. P. Langtangen, H. Osnes and J. Skogseid
                                                                                                                                                                          Talk at the Fourth National Conference on Computational Mechanics (MekIT'07), Trondheim, Norway, 2007
                                                                                                                                                                        2. Computer Modeling of Cardiac Electro-Mechanics - Models and Numerical Methods
                                                                                                                                                                          J. Sundnes, S. Wall and H. Osnes
                                                                                                                                                                          Talk at Cardiac Modeling seminar, Simula Research Laboratory, 2009
                                                                                                                                                                        3. Simulation of Strongly Coupled Electro-Mechanics in an Infarcted Left Ventricle
                                                                                                                                                                          J. Sundnes, S. Wall and H. Osnes
                                                                                                                                                                          Invited talk at the workshop Bidomain 2009, University of Graz, 2009
                                                                                                                                                                        4. On the Perfermance of an Algebraic Multigrid Preconditioner for the Pressure Equationwith Highly Discontinuous Media
                                                                                                                                                                          J. B. Haga, H. P. Langtangen, B. F. Nielsen and H. Osnes
                                                                                                                                                                          Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009

                                                                                                                                                                        Pearu Peterson

                                                                                                                                                                          Talks

                                                                                                                                                                          1. The G3 F2PY for Connection Python and FORTRAN 90 Programs
                                                                                                                                                                            P. Peterson
                                                                                                                                                                            Talk at Workshop on Software Issues in Computational Science and Engineering, Uppsala, Sweden, 2007

                                                                                                                                                                          Sune Hansborg Pettersen

                                                                                                                                                                            Articles in International Journals

                                                                                                                                                                            1. Subject Specific Finite Element Analysis of Implant Stability for a Cementless Femoral Stem
                                                                                                                                                                              S. H. Pettersen, T. S. Wik and B. H. Skallerud
                                                                                                                                                                              Clinical Biomechanics, vol. 24, pp. 480—487, 2009, [DOI]
                                                                                                                                                                            2. Subject Specific Finite Element Analysis of Stress Shielding Around a Cementless Femoral Stem
                                                                                                                                                                              S. H. Pettersen, T. S. Wik and B. H. Skallerud
                                                                                                                                                                              Clinical Biomechanics, vol. 24, pp. 196—202, 2009, [DOI]

                                                                                                                                                                            Refereed Proceedings

                                                                                                                                                                            1. Subject Specific Finite Element Analysis of Callus Distraction - a Preliminary Study
                                                                                                                                                                              S. H. Pettersen, A. Aamodt, O. A. Foss and B. H. Skallerud
                                                                                                                                                                              in Fifth national conference on Computational Mechanics (MekIT´09), 2009

                                                                                                                                                                            Theses

                                                                                                                                                                            1. Subject Specific Finite Element Analysis of Bone for Evaluation of the Healing of a Leg Lengthening and Evaluation of Femoral Stem Design
                                                                                                                                                                              S. H. Pettersen
                                                                                                                                                                              Ph.D. Thesis, Norwegian University of Science and Technology, 2009

                                                                                                                                                                            Talks

                                                                                                                                                                            1. Subject Specific Finite Element Analysis of a Callus Distraction - a Preliminary Study
                                                                                                                                                                              S. H. Pettersen, A. Aamodt, O. A. Foss and B. H. Skallerud
                                                                                                                                                                              Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009

                                                                                                                                                                            Simone Pezzuto

                                                                                                                                                                              Articles in International Journals

                                                                                                                                                                              1. Active contraction of the cardiac ventricle and distortion of the microstructural architecture
                                                                                                                                                                                S. Pezzuto and D. Ambrosi
                                                                                                                                                                                International Journal for Numerical Methods in Biomedical Engineering, vol. 30, pp. 1578—1596, 2014
                                                                                                                                                                              2. Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
                                                                                                                                                                                S. Land, S. Arens, C. M. Augustin, L. Baron, S. Castro, A. Crozier, M. Favino, T. E. Fastl, T. Fritz, H. Gao, A. Gizzi, B. E. Griffith, D. E. Hurtado, R. Krause, X. Luo, M. P. Nash, S. Pezzuto, G. Plank, S. Rossi, D. Ruprecht, G. Seemann, N. P. Smith, J. Sundnes, J. Rice, N. A. Trayanova, D. Wang, Z. J. Wang and S. A. Niederer
                                                                                                                                                                                Proceedings of the Royal Society A, vol. 471, 2015
                                                                                                                                                                              3. High-order finite element methods for cardiac monodomain simulations
                                                                                                                                                                                K. P. Vincent, M. J. Gonzales, A. K. Gillette, C. T. Villongco, S. Pezzuto, J. H. Omens, M. J. Holst and A. D. McCulloch
                                                                                                                                                                                Frontiers in Physiology, 2015, [DOI]
                                                                                                                                                                              4. Space-discretization error analysis and stabilization schemes for conduction velocity in cardiac electrophysiology
                                                                                                                                                                                S. Pezzuto, J. E. Hake and J. Sundnes
                                                                                                                                                                                International Journal for Numerical Methods in Biomedical Engineering, 2016, [DOI]

                                                                                                                                                                              Chapters in Books

                                                                                                                                                                              1. Patient–Specific Parameter Estimation for a Transversely Isotropic Active Strain Model of Left Ventricular Mechanics
                                                                                                                                                                                S. U. Gjerald, J. E. Hake, S. Pezzuto, J. Sundnes and S. Wall
                                                                                                                                                                                in Lecture Notes in Computer Science, Springer International Publishing, pp. 93–104, 2014

                                                                                                                                                                              Refereed Proceedings

                                                                                                                                                                              1. Patient–Specific Parameter Estimation for a Transversely Isotropic Active Strain Model of Left Ventricular Mechanics
                                                                                                                                                                                S. U. Gjerald, J. E. Hake, S. Pezzuto, J. Sundnes and S. Wall
                                                                                                                                                                                in Statistical Atlases and Computational Models of the Heart-Imaging and Modelling Challenges, 2015

                                                                                                                                                                              Talks

                                                                                                                                                                              1. Computational Models of Electro-Mechanical Interactions in the Heart
                                                                                                                                                                                J. Sundnes, S. Wall, S. Pezzuto, J. E. Hake and B. L. de Oliveira
                                                                                                                                                                                Invited mini symposium presentation at the European Conference for Mathematics in Industry, Taormina, Italy., 2014

                                                                                                                                                                              Eleonora Piersanti

                                                                                                                                                                                Talks

                                                                                                                                                                                1. Modelling and simulation of viscous and poroelastic fluid flow in the brain
                                                                                                                                                                                  J. J. Lee, K.-A. Mardal, E. Piersanti and M. E. Rognes
                                                                                                                                                                                  FEniCS16, Simula Research Laboratory, 2016
                                                                                                                                                                                2. On accurate and efficient simulations of multiple-network poroelastic modelling with applications to interstitial fluid flow in the human brain
                                                                                                                                                                                  J. J. Lee, K.-A. Mardal, E. Piersanti and M. E. Rognes
                                                                                                                                                                                  WCCM XII & APCOM VI, Seoul, 2016
                                                                                                                                                                                3. Developing simulation technology to solve biomedical problems: analysis, implementation and applications
                                                                                                                                                                                  M. E. Rognes, E. Piersanti and A. Massing
                                                                                                                                                                                  University of Uppsala, 2016
                                                                                                                                                                                4. Modelling pulsatility in the context of Normal-Pressure Hydrocephalus via multiple-network poroelasticity
                                                                                                                                                                                  E. Piersanti, J. J. Lee, K.-A. Mardal and M. E. Rognes
                                                                                                                                                                                  5th International Conference on Computational and Mathematical Biomedical Engineering, Pittsburgh, US, 2017

                                                                                                                                                                                Posters

                                                                                                                                                                                1. The waterscape of the brain
                                                                                                                                                                                  E. Piersanti and M. E. Rognes
                                                                                                                                                                                  2016

                                                                                                                                                                                Giulia Pizzichelli

                                                                                                                                                                                  Articles in International Journals

                                                                                                                                                                                  1. A numerical investigation of intrathecal drug and gene vector dispersion within the cervical subarachnoid space
                                                                                                                                                                                    P. T. Haga, G. Pizzichelli, M. Mortensen, M. Kuchta, S. H. Pahlavian, E. Sinibaldi, B. A. Martin and K.-A. Mardal
                                                                                                                                                                                    Plos One, 2017, [DOI]

                                                                                                                                                                                  Hans Ekkehard Plesser

                                                                                                                                                                                    Articles in International Journals

                                                                                                                                                                                    1. Towards Reproducible Descriptions of Neuronal Network Models
                                                                                                                                                                                      H. E. Plesser, M.-O. Gewaltig and E. Nordlie
                                                                                                                                                                                      PLoS Computational Biology, vol. 5, 2009, [DOI]
                                                                                                                                                                                    2. Visualizing Neuronal Network Connectivity With Connectivity Pattern Tables
                                                                                                                                                                                      E. Nordlie and H. E. Plesser
                                                                                                                                                                                      Frontiers in Neuroinformatics, vol. 3, pp. 1—15, 2010, [DOI]

                                                                                                                                                                                    Talks

                                                                                                                                                                                    1. Simulation and Visualization of the Early Early Visual System Using PyNEST and ConnPlotter
                                                                                                                                                                                      H. E. Plesser, K. Austvoll and E. Nordlie
                                                                                                                                                                                      Talk at the Kongsberg Vision Meeting, The Norwegian Association of Optometrists, 2009

                                                                                                                                                                                    Victorien Emile Prot

                                                                                                                                                                                      Articles in International Journals

                                                                                                                                                                                      1. Transversely Isotropic Membrane Shells With Application to Mitral Valve Mechanics. Constitutive Modelling and Finite Element Implementation
                                                                                                                                                                                        V. E. Prot, B. H. Skallerud and G. A. Holzapfel
                                                                                                                                                                                        International Journal for Numerical Methods in Engineering, vol. 71, pp. 987—1008, 2007, [DOI]
                                                                                                                                                                                      2. Finite Element Analysis of the Mitral Apparatus: Annulus Shape Effect and Chordal Force Distribution
                                                                                                                                                                                        V. E. Prot, H. Rune and B. H. Skallerud
                                                                                                                                                                                        Biomechanics and Modeling in Mechanobiology, vol. 8, pp. 43—55, 2009
                                                                                                                                                                                      3. Nonlinear Solid Finite Element Analysis of Mitral Valves With Heterogeneous Leaflet Layers
                                                                                                                                                                                        V. E. Prot and B. H. Skallerud
                                                                                                                                                                                        Computational Mechanics, vol. 43, pp. 353—368, 2009
                                                                                                                                                                                      4. Modeling Active Muscle Contraction in Mitral Valve Leaflets During Systole: a First Approach
                                                                                                                                                                                        B. H. Skallerud, V. E. Prot and I. Nordrum
                                                                                                                                                                                        Biomechanics and Modeling in Mechanobiology, vol. 10, pp. 11—26, 2010, [DOI]
                                                                                                                                                                                      5. On Modelling and Analysis of Healthy and Pathological Human Mitral Valves: Two Case Studies
                                                                                                                                                                                        V. E. Prot, B. H. Skallerud, G. Sommer and G. A. Holzapfel
                                                                                                                                                                                        Journal of the Mechanical Behavior of Biomedical Materials, vol. 3, pp. 167—177, 2010, [DOI]
                                                                                                                                                                                      6. Contributions of prestrains, hyperelasticity, and muscle fiber activation on mitral valve systolic performance
                                                                                                                                                                                        V. E. Prot and B. H. Skallerud
                                                                                                                                                                                        International Journal for Numerical Methods in Biomedical Engineering, 2016, [DOI]
                                                                                                                                                                                      7. Contributions of prestrains, hyperelasticity, and muscle fiber activation on mitral valve systolic performance
                                                                                                                                                                                        V. E. Prot and B. H. Skallerud
                                                                                                                                                                                        International Journal for Numerical Methods in Biomedical Engineering, 2017
                                                                                                                                                                                      8. Nanoindentation and finite element modelling of chitosan–alginate multilayer coated hydrogels
                                                                                                                                                                                        V. E. Prot, B. T. Stokke, G. Maurstad, T. Sherstova and B. H. Skallerud
                                                                                                                                                                                        Soft Matter, 2017

                                                                                                                                                                                      Refereed Proceedings

                                                                                                                                                                                      1. On Material Modelling of Umbilical Vein
                                                                                                                                                                                        P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
                                                                                                                                                                                        in Fifth National Conference on Computational Mechanics (MekIT´09), 2009
                                                                                                                                                                                      2. Initial Study on Material Modeling of Umbilical Veins in Fetal Sheep
                                                                                                                                                                                        P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
                                                                                                                                                                                        in 6th World Congress of Biomechanics, 2010
                                                                                                                                                                                      3. FSI Simulation of the Mitral Valve With Contact and Active Anisotropic Material Models
                                                                                                                                                                                        L. R. Hellevik, M. Astorino, P. Moireau, V. E. Prot, B. H. Skallerud and J.-F. Gerbeau
                                                                                                                                                                                        in 6th World Congress of Biomechanics, 2010
                                                                                                                                                                                      4. A Biomechanical Model for Human Umbilical Veins and Wharton's Jelly
                                                                                                                                                                                        P. R. Leinan, V. E. Prot, C. N. van den Broek, T. Kiserud, B. H. Skallerud, L. R. Hellevik and F. N. van de Vosse
                                                                                                                                                                                        in 8th International Conference on Computational Fluid Dynamics in the Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                                                                                                                      5. Effects of an Orthogonal Contractile System in the Anterior Leaflet on the Systolic Mitral Valve Response: a Nonlinear Finite Element Study
                                                                                                                                                                                        V. E. Prot and B. H. Skallerud
                                                                                                                                                                                        in 10th Internation Symposium, Computational Methods in Biomechanics and Biomedical Engineering, 2012

                                                                                                                                                                                      Conference Proceedings

                                                                                                                                                                                      1. Alternative Elasticity Modeling Approaches for Mitral Valve Analysis: Consequences for Stress and Deformation Prediction
                                                                                                                                                                                        B. H. Skallerud and V. E. Prot
                                                                                                                                                                                        in Proceeding of the 22nd Nordic Seminar on Computational Mechanics, 2009

                                                                                                                                                                                      Theses

                                                                                                                                                                                      1. Modelling and Numerical Analysis of the Porcine and Human Mitral Apparatus
                                                                                                                                                                                        V. E. Prot
                                                                                                                                                                                        Ph.D. Thesis, Norwegian University of Science and Technology, 2008

                                                                                                                                                                                      Talks

                                                                                                                                                                                      1. Solid Finite Element Analysis of the Mitral Valve
                                                                                                                                                                                        V. E. Prot
                                                                                                                                                                                        Talk at CBC Seminar on Biomechanics, Trondheim, 2007
                                                                                                                                                                                      2. Effects on Connective Tissue Pathologies on Mitral Valve Response
                                                                                                                                                                                        V. E. Prot, B. H. Skallerud and G. A. Holzapfel
                                                                                                                                                                                        Talk at the Conference on Modeling of heterogeneous materials with application in construction and biomedical engineering, Prague, 2007
                                                                                                                                                                                      3. Solid Versus Membrane Finite Elements in Analysis of the Mitral Valve: a Case Study
                                                                                                                                                                                        V. E. Prot and B. H. Skallerud
                                                                                                                                                                                        Talk at the 6th International Conference on Computation of Shell & Spatial Structures, 2008
                                                                                                                                                                                      4. Mitral Valve Finite Element Analysis Using Human Uniaxial Tensile Data
                                                                                                                                                                                        V. E. Prot
                                                                                                                                                                                        Talk at Talk at 8th World Congress on Computational Mechanics, Venice, 2008
                                                                                                                                                                                      5. Alternative Elasticity Modeling Approaches for Mitral Valve Analysis: Consequences for Stress and Deformation Prediction
                                                                                                                                                                                        B. H. Skallerud and V. E. Prot
                                                                                                                                                                                        Talk at the 22nd Nordic seminar on Computational Mechanics, Aalborg, Denmark, October 22-23 2009, 2009
                                                                                                                                                                                      6. Finite Element Analysis of the Mitral Valve With Active Muscle Fibres
                                                                                                                                                                                        V. E. Prot and B. H. Skallerud
                                                                                                                                                                                        SIAM CSE Reno, Nevada, USA, 2011
                                                                                                                                                                                      7. Effects of an Orthogonal Contractile System in the Anterior Leaflet on the Systolic Mitral Valve Response: a Nonlinear Finite Element Study
                                                                                                                                                                                        V. E. Prot
                                                                                                                                                                                        10th International Symposium on Biomechanics and Biomedical Engineering, Berlin, 2012
                                                                                                                                                                                      8. Contributions of residual strains, hyperelasticity models, and muscle fiber activation on mitral valve systolic performance
                                                                                                                                                                                        B. H. Skallerud and V. E. Prot
                                                                                                                                                                                        9. European Solid Mechanics Conference, Madrid, 2015, 2015

                                                                                                                                                                                      Harikrishnan Radhakrishnan

                                                                                                                                                                                        Refereed Proceedings

                                                                                                                                                                                        1. Modeling Particle Deposition in the Human Lungs
                                                                                                                                                                                          H. Radhakrishnan and S. C. Kassinos
                                                                                                                                                                                          in 6th GRACM International Congress on Computational Mechanics, 2008
                                                                                                                                                                                        2. Using LES to Model Turbulent Particle Transport in Lungs
                                                                                                                                                                                          H. Radhakrishnan and S. C. Kassinos
                                                                                                                                                                                          in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
                                                                                                                                                                                        3. CFD Modeling of Turbulent Flow and Particle Deposition in Human Lungs
                                                                                                                                                                                          H. Radhakrishnan and S. C. Kassinos
                                                                                                                                                                                          in Conference Proceedings of the International Conference of IEEE Engineering in Medicine and Biology Society (2009), 2009
                                                                                                                                                                                        4. Using LES to Model Turbulent Particle Transport in Human Lungs
                                                                                                                                                                                          H. Radhakrishnan and S. C. Kassinos
                                                                                                                                                                                          in The 6th International Symposium on Turbulence and Shear Flow Phenomena (TSFP6), 2009
                                                                                                                                                                                        5. Numerical Modeling of Turbulent Airflow and Particle Deposition in a Bifurcating Airway Model
                                                                                                                                                                                          H. Radhakrishnan and S. C. Kassinos
                                                                                                                                                                                          in World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, 2010

                                                                                                                                                                                        Benjamin Ragan-Kelley

                                                                                                                                                                                          Talks

                                                                                                                                                                                          1. Diffing and Merging Jupyter Notebooks with nbdime
                                                                                                                                                                                            B. Ragan-Kelley, V. T. Fauske and M. S. Alnæs
                                                                                                                                                                                            SciPy 2016, 2016
                                                                                                                                                                                          2. nbdime: diffing and merging notebooks
                                                                                                                                                                                            V. T. Fauske, M. S. Alnæs and B. Ragan-Kelley
                                                                                                                                                                                            JupyterDay Orsay, 2016
                                                                                                                                                                                          3. nbdime: Notebook Diffing and Merging
                                                                                                                                                                                            V. T. Fauske, M. S. Alnæs and B. Ragan-Kelley
                                                                                                                                                                                            EuroSciPy 2016, Erlangen, Germany, 2016
                                                                                                                                                                                          4. 3D visualization in Jupyter Notebooks
                                                                                                                                                                                            M. S. Alnæs, V. T. Fauske and B. Ragan-Kelley
                                                                                                                                                                                            Luxembourg, 2017
                                                                                                                                                                                          5. Notebooks in Version Control - diffing and merging with nbdime
                                                                                                                                                                                            V. T. Fauske, B. Ragan-Kelley and M. S. Alnæs
                                                                                                                                                                                            Computational Mathematics with Jupyter workshop, Edinburgh, Scotland, 2017

                                                                                                                                                                                          S. Rahman

                                                                                                                                                                                            Articles in International Journals

                                                                                                                                                                                            1. A Finite Element Method for Modelling Electromechanical Wave Propagation in Anisotropic Piezoelectric Media
                                                                                                                                                                                              S. Rahman, H. P. Langtangen and C. H. W. Barnes
                                                                                                                                                                                              Communications in Computational Physics, vol. 2, pp. 271—292, 2007
                                                                                                                                                                                            2. Pulse-Induced Acoustoelectric Vibrations in Surface-Gated GaAs-Based Quantum Devices
                                                                                                                                                                                              S. Rahman, T. M. Stace, H. P. Langtangen, M. Kataoka and C. H. W. Barnes
                                                                                                                                                                                              Physical Review B: Condensed Matter and Materials Physics, vol. 75, 2007

                                                                                                                                                                                            Bjørn Anders Petterson Reif

                                                                                                                                                                                              Articles in International Journals

                                                                                                                                                                                              1. Tracking Airborne Legionella and Legionella Pneumophila at a Biological Treatment Plant
                                                                                                                                                                                                J. M. Blatny, B. A. P. Reif, G. Skogan, Ø. Andreassen, A. Høiby, E. Ask, V. Waagen, D. Aanonsen, I. S. Aaberge and D. A. Caugant
                                                                                                                                                                                                Enviromental Science & Technology, vol. 42, pp. 7360—7367, 2008, [DOI]
                                                                                                                                                                                              2. Towards Sensitizing the Nonlinear v^2-f Model to Turbulence Structures
                                                                                                                                                                                                B. A. P. Reif, M. Mortensen and C. A. Langer
                                                                                                                                                                                                Flow, Turbulence and Combustion, vol. 83, pp. 185—203, 2009, [DOI]
                                                                                                                                                                                              3. Variational Multiscale Turbulence Modelling in a High Order Spectral Element Method
                                                                                                                                                                                                C. E. Wasberg, T. Gjesdal, B. A. P. Reif and Ø. Andreassen
                                                                                                                                                                                                Journal of Computational Physics, vol. 228, pp. 7333—7356, 2009, [DOI]
                                                                                                                                                                                              4. Assessment of the Finite Volume Method Applied to the V^2 - F Model
                                                                                                                                                                                                M. Mortensen, B. A. P. Reif and C. E. Wasberg
                                                                                                                                                                                                International Journal for Numerical Methods in Fluids, vol. 63, pp. 495—516, 2010, [DOI]
                                                                                                                                                                                              5. Consequence Assessment of Indoor Dispersion of Sarin-A Hypothetical Scenario
                                                                                                                                                                                                M. Endregård, B. A. P. Reif, T. Vik and O. Busmundrud
                                                                                                                                                                                                Journal of Hazardous Materials, vol. 176, pp. 381—388, 2010, [DOI]
                                                                                                                                                                                              6. Dispersion of Legionella-Containing Aerosols From a Biological Treatment Plant
                                                                                                                                                                                                J. M. Blatny, H. E. Fossum, J. Ho, M. Tutkun, G. Skogan, Ø. Andreassen, E. M. Fykse, V. Waagen and B. A. P. Reif
                                                                                                                                                                                                Frontiers in Bioscience, vol. E3, pp. 1300—1309, 2011
                                                                                                                                                                                              7. Direct Numerical Simulation of Transitional Flow in a Patient-Specific Intracranial Aneurysm
                                                                                                                                                                                                K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                                                                Journal of Biomechanics, vol. 44, pp. 2826—2832, 2011, [DOI]
                                                                                                                                                                                              8. Modeling the Evaporation From a Thin Liquid Surface Beneath a Turbulent Boundary Layer
                                                                                                                                                                                                T. Vik and B. A. P. Reif
                                                                                                                                                                                                International Journal of Thermal Sciences, vol. 50, pp. 2311—2317, 2011, [DOI]
                                                                                                                                                                                              9. Numerical Simulations of the Pulsating Flow of Cerebrospinal Fluid Flow in the Cervical Spinal Canal of a Chiari Patient
                                                                                                                                                                                                A. Helgeland, K.-A. Mardal, V. Haughton and B. A. P. Reif
                                                                                                                                                                                                Journal of Biomechanics, vol. 47, pp. 1082—90, 2014

                                                                                                                                                                                              Books

                                                                                                                                                                                              1. Statistical Theory and Modeling for Turbulent Flows
                                                                                                                                                                                                P. A. Durbin and B. A. P. Reif
                                                                                                                                                                                                Wiley, 2010

                                                                                                                                                                                              Refereed Proceedings

                                                                                                                                                                                              1. Modelling Adverse Pressure-Gradient Boundary Layers Using the Nonlinear V2f Model in Combinationwith a Structure Based Model
                                                                                                                                                                                                M. Mortensen, B. A. P. Reif and C. A. Langer
                                                                                                                                                                                                in 7th international ERCOFTAC Symposium on Engineering Turbulence Modeling and Measurements, 2008
                                                                                                                                                                                              2. Consequence Management Challenges After Indoor Dispersion of a Toxic Chemical
                                                                                                                                                                                                M. Endregård, B. A. P. Reif, T. Vik and O. Busmundrud
                                                                                                                                                                                                in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
                                                                                                                                                                                              3. Tracking Pathogenic Biological Agents in Air - a Case Study of the Outbreak of Legionellosis in Norway
                                                                                                                                                                                                J. M. Blatny, E. M. Fykse, B. A. P. Reif, Ø. Andreassen, J. S. Olsen and V. Waagen
                                                                                                                                                                                                in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
                                                                                                                                                                                              4. Numerical Modeling of Aerosol Dispersion Inside a Rotating Aerosol Chamber
                                                                                                                                                                                                M. Vartdal and B. A. P. Reif
                                                                                                                                                                                                in MekIT´09. Fifth national conference on Computational Mechanics, 2009
                                                                                                                                                                                              5. Predicting Particle Deposition in the Human Airways With RANS
                                                                                                                                                                                                H. E. Fossum and B. A. P. Reif
                                                                                                                                                                                                in MekIT´09. Fifth national conference on Computational Mechanics, 2009
                                                                                                                                                                                              6. Proper Orthogonal Decomposition of Velocity and Scalar Fields in Shear Generated Turbulence
                                                                                                                                                                                                M. Tutkun, B. A. P. Reif, P. B. V. Johansson and J. Werne
                                                                                                                                                                                                in MekIT´09. Fifth national conference on Computational Mechanics, 2009
                                                                                                                                                                                              7. Large Eddy Simulations of the Evaporation From a Liquid Pool Beneath a Turbulent Air Flow
                                                                                                                                                                                                T. Vik and B. A. P. Reif
                                                                                                                                                                                                in MekIT´09. Fifth national conference on Computational Mechanics, 2009
                                                                                                                                                                                              8. CFD Simulations of the Evaporation From a Liquid Pool in a Turbulent Flow
                                                                                                                                                                                                T. Vik, B. A. P. Reif and M. Endregård
                                                                                                                                                                                                in 7th Symposium on chemical, biological, nuclear and radiological threats, 2009
                                                                                                                                                                                              9. Implementing a K-E Turbulence Model in the FEniCS Finite Element Programming Environment
                                                                                                                                                                                                K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
                                                                                                                                                                                                in MekIT'09.  Fifth  national  conference  on  Computational  Mechanics, 2009
                                                                                                                                                                                              10. Unsteady RANS Modelling of Pollutant Dispersion in an Idealized Urban Area
                                                                                                                                                                                                E. M. M. Wingstedt and B. A. P. Reif
                                                                                                                                                                                                in MekIT´09. Fifth national conference on Computational Mechanics, 2009
                                                                                                                                                                                              11. Modeling the Dispersion and Transport of Aerosols Emitted From Industrial Facility During 2005 and 2008 Outbreaks of Legionnaire's Disease in Norway
                                                                                                                                                                                                H. E. Fossum, M. Tutkun, B. A. P. Reif and Ø. Andreassen
                                                                                                                                                                                                in Sixth national conference on Computational Mechanics (MekIT'11), 2011
                                                                                                                                                                                              12. Large Eddy Simulations of the Release of Liquified Chlorine From a Pressurized Tank Into the Atmosphere
                                                                                                                                                                                                T. Vik and B. A. P. Reif
                                                                                                                                                                                                in Sixth national conference on Computational Mechanics (MekIT'11), 2011
                                                                                                                                                                                              13. On the Complexity of Stationary Flow in Patient-Specific Aneurysms
                                                                                                                                                                                                K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                                                                in MekIT'11 Sixth national conference on Computational Mechanics, 2011
                                                                                                                                                                                              14. Investigations of Transistional Flows Using Image Based Hemodynamics
                                                                                                                                                                                                K. Valen-Sendstad, M. Mortensen, K.-A. Mardal, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                                                                in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                                                                                                                              15. Flow Patterns and Aerosol Dispersion Inside an Aerosol Test Chamber
                                                                                                                                                                                                H. E. Fossum, B. A. P. Reif and G. Skogan
                                                                                                                                                                                                in Sixth national conference on Computational Mechanics (MekIT'11), 2011

                                                                                                                                                                                              Talks

                                                                                                                                                                                              1. Turbulens - Det Siste Uløste Problemet I Klassisk Fysikk
                                                                                                                                                                                                B. A. P. Reif
                                                                                                                                                                                                Talk at Popular Mathematics (POPMAT), University of Oslo, 2008
                                                                                                                                                                                              2. Numerical Modeling of Aerosol Dispersion Inside a Rotating Aerosol Chamber
                                                                                                                                                                                                M. Vartdal and B. A. P. Reif
                                                                                                                                                                                                Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                                                                              3. Predicting Particle Deposition in the Human Airways With RANS
                                                                                                                                                                                                H. E. Fossum and B. A. P. Reif
                                                                                                                                                                                                Talk at Mekit'09: Fifth National Conference on Computational Mechanics, 2009
                                                                                                                                                                                              4. Proper Orthogonal Decomposition of Velocity and Scalar Fields in Shear Generated Turbulence
                                                                                                                                                                                                M. Tutkun, B. A. P. Reif, P. B. V. Johansson and J. Werne
                                                                                                                                                                                                Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                                                                              5. Large Eddy Simulations of the Evaporation From a Liquid Pool Beneath a Turbulent Air Flow
                                                                                                                                                                                                T. Vik and B. A. P. Reif
                                                                                                                                                                                                Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                                                                              6. Implementing a K-E Turbulence Model in the FEniCS Finite Element Programming Environment
                                                                                                                                                                                                K. Valen-Sendstad, M. Mortensen, H. P. Langtangen, B. A. P. Reif and K.-A. Mardal
                                                                                                                                                                                                Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                                                                              7. Unsteady RANS Modelling of Pollutant Dispersion in an Idealized Urban Area
                                                                                                                                                                                                E. M. M. Wingstedt and B. A. P. Reif
                                                                                                                                                                                                Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                                                                              8. The Finite Element Library FEniCS and Simulation of Blood Flow in Cerebral Aneurysms
                                                                                                                                                                                                K.-A. Mardal, K. Valen-Sendstad, M. S. Alnæs, M. Mortensen, H. P. Langtangen and B. A. P. Reif
                                                                                                                                                                                                Talk at CSB Seminar, University of Stuttgart, 2011
                                                                                                                                                                                              9. Computational Cerebral Hemodynamics
                                                                                                                                                                                                K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                                                                The Norwegian Defence Research Establishment, 2011
                                                                                                                                                                                              10. Simulation Methodology for Cerebral Blood Flow
                                                                                                                                                                                                K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                                                                Biomedical Simulation Lab, Institute of Biomaterials and Biomedical Engineering at the University of Toronto, 2011
                                                                                                                                                                                              11. Direct Numerical Simulation of Transitional Flow in Patient-Specific Intracranial Aneurysms
                                                                                                                                                                                                K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, B. A. P. Reif and H. P. Langtangen
                                                                                                                                                                                                ASME 2011 Summer Bioengineering Conference, 2011
                                                                                                                                                                                              12. 'Turbulence' in Cerebral Aneurysms
                                                                                                                                                                                                K. Valen-Sendstad, K.-A. Mardal, M. Mortensen, H. P. Langtangen, B. A. P. Reif and D. A. Steinman
                                                                                                                                                                                                CBC Workshop on Biomechanics, 17-18 November, 2011
                                                                                                                                                                                              13. On the Assumption of Laminar Flow of CSF in Chiari Patients
                                                                                                                                                                                                K.-A. Mardal, A. Helgeland, V. Haughton, B. A. P. Reif and K.-H. Støverud
                                                                                                                                                                                                international Chiari Research Group, 2014

                                                                                                                                                                                              Johannes Ring

                                                                                                                                                                                                Articles in International Journals

                                                                                                                                                                                                1. The FEniCS Project Version 1.5
                                                                                                                                                                                                  M. S. Alnæs, J. Blechta, J. E. Hake, A. Johansson, B. Kehlet, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
                                                                                                                                                                                                  Archive of Numerical Software, vol. 3, 2015

                                                                                                                                                                                                Posters

                                                                                                                                                                                                1. Figshare
                                                                                                                                                                                                  A. Ahmadia, C. Kees, D. S. Seljebotn, O. Čertík, J. Ring, J. Tang, R. Maynard and V. Braun
                                                                                                                                                                                                  AGU, 2014
                                                                                                                                                                                                2. FEniCS: Sustainable Software Development Practices
                                                                                                                                                                                                  M. S. Alnæs, J. Blechta, J. S. Hale, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
                                                                                                                                                                                                  2017

                                                                                                                                                                                                Marie E. Rognes

                                                                                                                                                                                                  Articles in International Journals

                                                                                                                                                                                                  1. Efficient Assembly of H(div) and H(curl) Conforming Finite Elements
                                                                                                                                                                                                    M. E. Rognes, R. C. Kirby and A. Logg
                                                                                                                                                                                                    SIAM Journal on Scientific Computing, vol. 36, pp. 4130—4151, 2009
                                                                                                                                                                                                  2. Modelling of and Mixed Finite Element Methods for Gels in Biomedical Applications
                                                                                                                                                                                                    M. E. Rognes, M.-C. Calderer and C. Micek
                                                                                                                                                                                                    SIAM Journal on Applied Mathematics, vol. 70, pp. 1305—1329, 2009, [DOI]
                                                                                                                                                                                                  3. Stability of Lagrange Elements for the Mixed Laplacian
                                                                                                                                                                                                    D. N. Arnold and M. E. Rognes
                                                                                                                                                                                                    Calcolo, vol. 46, pp. 245—260, 2009, [DOI]
                                                                                                                                                                                                  4. Mixed Finite Element Methods for Viscoelasticity With Weak Symmetry
                                                                                                                                                                                                    M. E. Rognes and R. Winther
                                                                                                                                                                                                    Mathematical Models and Methods in Applied Sciences (M3AS), vol. 20, pp. 955—985, 2010, [DOI]
                                                                                                                                                                                                  5. An Analysis of the Shock Strength Needed to Achieve Defibrillation in a Simplified Mathematical Model of Cardiac Tissue
                                                                                                                                                                                                    A. Tveito, G. T. Lines, M. E. Rognes and M. Maleckar
                                                                                                                                                                                                    International Journal of Numerical Analysis and Modeling, vol. 9, pp. 644—657, 2012
                                                                                                                                                                                                  6. Automated Derivation of the Adjoint of High-Level Transient Finite Element Programs
                                                                                                                                                                                                    P. E. Farrell, D. A. Ham, S. W. Funke and M. E. Rognes
                                                                                                                                                                                                    SIAM Journal on Scientific Computing, vol. 35, pp. 369—393, 2013
                                                                                                                                                                                                  7. Automating the Solution of PDEs on the Sphere and Other Manifolds in FEniCS 1.2
                                                                                                                                                                                                    M. E. Rognes, D. A. Ham, C. Cotter and A. McRae
                                                                                                                                                                                                    Geoscientific Model Development, pp. 2099—2119, 2013
                                                                                                                                                                                                  8. Automated Goal-Oriented Error Control I: Stationary Variational Problems
                                                                                                                                                                                                    M. E. Rognes and A. Logg
                                                                                                                                                                                                    SIAM Journal on Scientific Computing, vol. 35, pp. 173—193, 2013
                                                                                                                                                                                                  9. Benchmarking FEniCS for Mantle Convection Simulations
                                                                                                                                                                                                    L. Vynnytska, M. E. Rognes and S. Clark
                                                                                                                                                                                                    Computers & Geosciences, vol. 50, pp. 95—105, 2013
                                                                                                                                                                                                  10. Unified Form Language: a Domain-Specific Language for Weak Formulations of Partial Differential Equations
                                                                                                                                                                                                    M. S. Alnæs, A. Logg, K. B. Ølgaard, M. E. Rognes and G. N. Wells
                                                                                                                                                                                                    ACM Transactions on Mathematical Software, vol. 40, 2014
                                                                                                                                                                                                  11. A Stabilized Nitsche Fictitious Domain Method for the Stokes Problem
                                                                                                                                                                                                    A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                                                                                                    Journal of Scientific Computing, vol. 61, pp. 604—628, 2014, [DOI]
                                                                                                                                                                                                  12. A Stabilized Nitsche Overlapping Mesh Method for the Stokes Problem
                                                                                                                                                                                                    A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                                                                                                    Numerische Mathematik, vol. 128, pp. 73—101, 2014, [DOI]
                                                                                                                                                                                                  13. A Nitsche-based Cut Finite Element Method for a Fluid-Structure Interaction Problem
                                                                                                                                                                                                    A. Massing, M. G. Larson, A. Logg and M. E. Rognes
                                                                                                                                                                                                    Communications in Applied Mathematics and Computational Science, vol. 10, pp. 97—120, 2015, [DOI]
                                                                                                                                                                                                  14. The FEniCS Project Version 1.5
                                                                                                                                                                                                    M. S. Alnæs, J. Blechta, J. E. Hake, A. Johansson, B. Kehlet, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
                                                                                                                                                                                                    Archive of Numerical Software, vol. 3, 2015
                                                                                                                                                                                                  15. Adjoint Multi-Start Based Estimation of Cardiac Hyperelastic Material Parameters using Shear Data
                                                                                                                                                                                                    G. Balaban, M. S. Alnæs, J. Sundnes and M. E. Rognes
                                                                                                                                                                                                    Biomechanics and Modeling in Mechanobiology, pp. 1—13, 2016
                                                                                                                                                                                                  16. High resolution data assimilation of cardiac mechanics
                                                                                                                                                                                                    G. Balaban, H. Finsberg, H. H. Odland, M. E. Rognes, S. Ross, J. Sundnes and S. Wall
                                                                                                                                                                                                    International journal for numerical methods in biomedical engineering, 2017, [DOI]
                                                                                                                                                                                                  17. cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology
                                                                                                                                                                                                    M. E. Rognes, P. E. Farrell, S. W. Funke, J. E. Hake and M. Maleckar
                                                                                                                                                                                                    Journal of Open Source Software, 2017, [DOI]
                                                                                                                                                                                                  18. Adjoint-based estimation of cardiac activation times
                                                                                                                                                                                                    S. Kallhovd, M. Maleckar and M. E. Rognes
                                                                                                                                                                                                    International Journal for Numerical Methods in Biomedical Engineering, 2017

                                                                                                                                                                                                  Chapters in Books

                                                                                                                                                                                                  1. Dynamic Simulations of Convection in the Earth's Mantle
                                                                                                                                                                                                    L. Vynnytska, S. Clark and M. E. Rognes
                                                                                                                                                                                                    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 587—602, 2012
                                                                                                                                                                                                  2. Common and Unusual Finite Elements
                                                                                                                                                                                                    R. C. Kirby, A. Logg, M. E. Rognes and A. R. Terrel
                                                                                                                                                                                                    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 91—116, 2012
                                                                                                                                                                                                  3. Automated Testing of Saddle Point Stability Conditions
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 655—670, 2012
                                                                                                                                                                                                  4. FFC: the FEniCS Form Compiler
                                                                                                                                                                                                    A. Logg, K. B. Ølgaard, M. E. Rognes and G. N. Wells
                                                                                                                                                                                                    in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 223—234, 2012
                                                                                                                                                                                                  5. Astrocytic Ion Dynamics: Implications for Potassium Buffering and Liquid Flow
                                                                                                                                                                                                    G. Halnes, K. H. Pettersen, L. Øyehaug, M. E. Rognes, E. A. Nagelhus and G. T. Einevoll
                                                                                                                                                                                                    in Computational Geoscience, Springer, 2017

                                                                                                                                                                                                  Refereed Proceedings

                                                                                                                                                                                                  1. Exploring Automated Adaptivity and Error Control
                                                                                                                                                                                                    M. E. Rognes and A. Logg
                                                                                                                                                                                                    in AIP Conference Proceedings, 2010
                                                                                                                                                                                                  2. A Newton Method for Fluid-Structure Interaction Using Full Jacobians Based on Automatic Form Differentiation
                                                                                                                                                                                                    G. Balaban, A. Logg and M. E. Rognes
                                                                                                                                                                                                    in 6th European Congress on Computational Methods in Applied Sciences and Engineering, ECCOMAS 2012, 2012
                                                                                                                                                                                                  3. Automatically Generated Solvers for Variational Formulations of Time-Dependent Partial Differential Equations
                                                                                                                                                                                                    M. E. Rognes, B. Kehlet and A. Logg
                                                                                                                                                                                                    in 6th European Congress on Computational Methods in Applied Sciences and Engineering, ECCOMAS 2012, 2012
                                                                                                                                                                                                  4. Personalized Cardiac Mechanical Model using a High Resolution Contraction Field
                                                                                                                                                                                                    H. Finsberg, G. Balaban, J. Sundnes, M. E. Rognes, H.-H. Odland, S. Ross and S. Wall
                                                                                                                                                                                                    in VPH16 Translating VPH to the Clinic, 2016

                                                                                                                                                                                                  Conference Proceedings

                                                                                                                                                                                                  1. Least Squares Fitting of a Cardiac Hyperelasticity Model Using an Automatically Derived Adjoint Equation
                                                                                                                                                                                                    G. Balaban, J. Sundnes, M. S. Alnæs and M. E. Rognes
                                                                                                                                                                                                    in Proceedings of NSCM-27: the 27th Nordic Seminar on Computational Mechanics, 2014
                                                                                                                                                                                                  2. Personalization of a Cardiac Compuational Model using Clinical Measurements
                                                                                                                                                                                                    H. Finsberg, G. Balaban, J. Sundnes, M. E. Rognes and S. Wall
                                                                                                                                                                                                    in 28th Nordic Seminar on Computational Mechanics, 2015
                                                                                                                                                                                                  3. Optimization of a Spatially Varying Cardiac Contraction parameter using the Adjoint Method
                                                                                                                                                                                                    H. Finsberg, G. Balaban, M. E. Rognes, J. Sundnes and S. Wall
                                                                                                                                                                                                    in FEniCS'16, 2016

                                                                                                                                                                                                  Theses

                                                                                                                                                                                                  1. Mixed Finite Element Methods With Applications to Viscoelasticity and Gels
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Ph.D. Thesis, University of Oslo, 2009

                                                                                                                                                                                                  Talks

                                                                                                                                                                                                  1. Mixed Finite Element Methods and Applications to Deformations of Elastic-Like Materials
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Centre of Mathematics for Applications, 2007
                                                                                                                                                                                                  2. The Free Energy, the Boundary Value Problem and Then What?
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Ferroelectric phenomena in liquid crystals, Kent State University, 2007
                                                                                                                                                                                                  3. Compiling H(div) and H(curl) Variational Forms
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Automating the development of scientific computing software, Louisiana State University, 2008
                                                                                                                                                                                                  4. Mixed Finite Elements for Viscoelasticity
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Invited talk at the Computer Science department, University of Chicago, 2008
                                                                                                                                                                                                  5. Introduction to Finite Elements: Saddle Point Problems
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Ferroelectric phenomena in soft matter systems, American Institute of Mathematics, 2008
                                                                                                                                                                                                  6. Automated Error Control. Current Status and Future Ambitions
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Simula seminar, 2009
                                                                                                                                                                                                  7. Efficient Assembly of H(div) and H(curl) Conforming Variational Forms
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    ICOSAHOM, Norwegian University of Science and Technology, 2009
                                                                                                                                                                                                  8. Mixed Finite Element Methods for Linear Viscoelasticity
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Compatible and innovative discretizations for PDEs. Algorithms, analysis and implementation. Norwegian Academy of Science and Letters, 2009
                                                                                                                                                                                                  9. Automated Goal-Oriented Error Control for Stationary Variational Problems
                                                                                                                                                                                                    M. E. Rognes and A. Logg
                                                                                                                                                                                                    Talk at FEniCS'10, KTH Royal Institute of Technology, Stockholm, 2010
                                                                                                                                                                                                  10. Automated Goal-Oriented Error Control for Stationary Variational Problems
                                                                                                                                                                                                    M. E. Rognes and A. Logg
                                                                                                                                                                                                    Presentation at the European Finite Element Fair 2010, University of Warwick, 2010
                                                                                                                                                                                                  11. A Framework for Automated Goal-Oriented Error Control
                                                                                                                                                                                                    M. E. Rognes and A. Logg
                                                                                                                                                                                                    Talk at BIT 50 - Trends in Numerical Computing, 2010
                                                                                                                                                                                                  12. Automated Goal-Oriented Error Control
                                                                                                                                                                                                    A. Logg and M. E. Rognes
                                                                                                                                                                                                    China-Norway-Sweden Workshop on Computational Mathematics, 2010
                                                                                                                                                                                                  13. Automated Goal-Oriented Error Control With Applications to Fluid Flow
                                                                                                                                                                                                    M. E. Rognes and A. Logg
                                                                                                                                                                                                    Talk at CBC Workshop on Cerebral Blood Flow and Stroke - Clinical, Experimental and Mathematical Models and Problems, 2010
                                                                                                                                                                                                  14. Automated Goal-Oriented Error Control With Applications to Nonlinear Elasticity
                                                                                                                                                                                                    M. E. Rognes and A. Logg
                                                                                                                                                                                                    Talk at DSPDEs 2010 - Emerging Topics in Dynamical Systems and Partial Differential Equations, Barcelona, 2010
                                                                                                                                                                                                  15. Automated Goal-Oriented Error Control
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25, 2010
                                                                                                                                                                                                  16. FEniCS After 1.0: Current Trends at CBC@Simula
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Talk at FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
                                                                                                                                                                                                  17. More Or Less Shocking: Using Energy Estimates to Answer Scientific Questions
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Talk at Biocomp Seminar, Simula Research Laboratory, October 2011, 2011
                                                                                                                                                                                                  18. Automated Goal-Oriented Error Control
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Talk at CBC workshop on Biomechanics, November 2011, 2011
                                                                                                                                                                                                  19. Error Control and Adaptivity for the Non-Expert
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Talk at CBC Workshop on Biomedical Modeling, 2011
                                                                                                                                                                                                  20. Automated Goal-Oriented Error Control a Posteriori Error Estimation and Adaptivity in Finite Element Exterior Calculus
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Talk at USNCCM '11, Minneapolis, 2011
                                                                                                                                                                                                  21. Bringing Error Control to the Non-Expert - Automation of a Posteriori Error Estimation
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Talk at CBC Workshop on Multiscale Problems and Methods, 2011
                                                                                                                                                                                                  22. The FEniCS Project
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Talk at Imperial College, 2011
                                                                                                                                                                                                  23. Goal-Oriented Error Control Automated!
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Talk at SIAM CSE Reno, Nevada, USA, 2011
                                                                                                                                                                                                  24. FEniCS: the Next Generation PDE Software
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Talk at CBC Workshop on Biomedical Modeling, 2011
                                                                                                                                                                                                  25. Techniques for Automated Treatment of Variational Forms Over Arbitrary Dimension Tensor Product Finite Elements
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    CBC Seminar series, 2012
                                                                                                                                                                                                  26. Automated FEniCS Frameworks for Adjoint Models and Their Applications
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    KAUST, 2012
                                                                                                                                                                                                  27. The FEniCS Project: a Short Course
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    KAUST, 2012
                                                                                                                                                                                                  28. Automatically Generated Solvers for Variational Formulations of Time-Dependent Partial Differential Equations
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    ECCOMAS, 2012
                                                                                                                                                                                                  29. The FEniCS Project: a Tutorial
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Imperial College, 2012
                                                                                                                                                                                                  30. The FEniCS Project: a Modern Framework for the Automated Solution of PDEs by FEM
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Computational Geoscience Workshop, 2012
                                                                                                                                                                                                  31. FEniCS on a Moebius Strip
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    CBC seminar series, 2013
                                                                                                                                                                                                  32. Solving PDEs Over Manifolds With FEniCS
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    FEniCS'13, Cambridge, 2013
                                                                                                                                                                                                  33. An Adjoint-Enabled Simulation Framework for Cardiac Electrophysiology
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    CBC/CCI workshop Advancing numerical technologies in the cardiac domain, 2013
                                                                                                                                                                                                  34. Adaptive Finite Elements: Practice and Implementation
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Centre for Mathematics for Applications, University of Oslo, 2014
                                                                                                                                                                                                  35. An Adjoint-Enabled Simulation Framework for Cardiac Electrophysiology
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    FEniCS'14 Workshop, University of Chicago center in Paris, France, 2014
                                                                                                                                                                                                  36. In Silico Physiological Flows
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Seminar in connection with Villani visit at Simula Research Laboratory, Fornebu, 2014
                                                                                                                                                                                                  37. High-Level Advanced Abstractions and Techniques in Finite Element Software
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    CBC Workshop on Computational Modeling with Applications in Biomedicine and Geophysics at Simula Research Laboratory, 2014
                                                                                                                                                                                                  38. Automated Goal-Oriented Error Control and Adaptivity
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    RCN site visit to the CBC, Simula Research Laboratory, Fornebu, 2014
                                                                                                                                                                                                  39. An Adjoint-Enabled Simulation Framework for Cardiac Electrophysiology
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    CBC and CCI Workshop on Cardiac Modelling at Simula Research Laboratory, Fornebu, 2014
                                                                                                                                                                                                  40. Perspectives on the Current State of the Art of Computational Modelling of Fluid Flow in the Brain Parenchyma
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    CBC and CINPLA Workshop on Modelling Liquid Transport in the Brain, Simula Research Laboratory, Fornebu, 2014
                                                                                                                                                                                                  41. Effect of Spinal Cord Viscoelasticity on Its Response to CSF Pressure Waves: a Computational Study
                                                                                                                                                                                                    N. Kylstad, K.-A. Mardal, V. Haughton and M. E. Rognes
                                                                                                                                                                                                    ASNR 53rd Annual Meeting & The Foundation of the ASNR Symposium 2015, April 25 – 30, Chicago, Illinois, 2015
                                                                                                                                                                                                  42. Biomedical Computing at Simula Research Laboratory
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    UNICAT Kick-off meeting, Porto, Portugal (Invited), 2015
                                                                                                                                                                                                  43. Introduction to dolfin-adjoint and its applications in cardiac electrophysiology
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    2015 Summer School in Computational Physiology: Models, Tools, and Techniques for Cardiac Applications, 2015
                                                                                                                                                                                                  44. A 2-day training course in FEniCS and dolfin-adjoint
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    NGCM Summer Academy, University of Southampton, 2015
                                                                                                                                                                                                  45. The FEniCS and Dolfin-adjoint Projects
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    NGCM Summer Academy, University of Southampton, 2015
                                                                                                                                                                                                  46. Towards a Unified Framework for Automated a Posteriori Error Estimation and Adaptivity in Space-Time
                                                                                                                                                                                                    M. E. Rognes, B. Kehlet, A. Logg and M. S. Alnæs
                                                                                                                                                                                                    SIAM CSE, Salt Lake City, USA, 2015
                                                                                                                                                                                                  47. Non-Manifold Manifold Simulations Using FEniCS
                                                                                                                                                                                                    D. Bernstein and M. E. Rognes
                                                                                                                                                                                                    FEniCS '15, Imperial College London, UK, 2015
                                                                                                                                                                                                  48. Identifying the Parameters of the Heart: Variational Data Assimilation in Cardiac Mechanics Using Dolfin-Adjoint
                                                                                                                                                                                                    M. E. Rognes, G. Balaban, J. Sundnes and M. S. Alnæs
                                                                                                                                                                                                    FEniCS '15, Imperial College London, UK, 2015
                                                                                                                                                                                                  49. New simulation technology driven by medical challenges: the Biomedical Computing Department @ Simula
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Oslo, Simula Research Laboratory, 2015
                                                                                                                                                                                                  50. The Numerical Waterscape of the Brain
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Norway-Russia workshop on Biot's equations and error estimation, Voss, Norway, 2016
                                                                                                                                                                                                  51. The FEniCS and Dolfin-adjoint Projects
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    NGCM Summer Academy, University of Southampton, 2016
                                                                                                                                                                                                  52. A 2-day training course in FEniCS and dolfin-adjoint
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    NGCM Summer Academy, University of Southampton, 2016
                                                                                                                                                                                                  53. The FEniCS and dolfin-adjoint projects
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Higher-order DG methods and finite element software for modern architectures, University of Bath, UK, 2016
                                                                                                                                                                                                  54. Modelling and simulation of viscous and poroelastic fluid flow in the brain
                                                                                                                                                                                                    J. J. Lee, K.-A. Mardal, E. Piersanti and M. E. Rognes
                                                                                                                                                                                                    FEniCS16, Simula Research Laboratory, 2016
                                                                                                                                                                                                  55. On accurate and efficient simulations of multiple-network poroelastic modelling with applications to interstitial fluid flow in the human brain
                                                                                                                                                                                                    J. J. Lee, K.-A. Mardal, E. Piersanti and M. E. Rognes
                                                                                                                                                                                                    WCCM XII & APCOM VI, Seoul, 2016
                                                                                                                                                                                                  56. Developing simulation technology to solve biomedical problems: analysis, implementation and applications
                                                                                                                                                                                                    M. E. Rognes, E. Piersanti and A. Massing
                                                                                                                                                                                                    University of Uppsala, 2016
                                                                                                                                                                                                  57. Simulating Cerebrospinal Fluid Flow and Spinal Cord Movement Associated with Syringomyelia
                                                                                                                                                                                                    V. Vinje, K.-A. Mardal, V. Haughton and M. E. Rognes
                                                                                                                                                                                                    Chalmers Institute of Technology, 2016
                                                                                                                                                                                                  58. High-level abstractions, algorithms and applications in forward and inverse finite element solution of PDEs
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Nordic Seminar on Computational Mechanics, Chalmers University of Technology, Sweden, 2016
                                                                                                                                                                                                  59. Waterscales: mathematical and computational foundations for modelling cerebral fluid flow
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    OBCE-Simula Workshop, Simula Research Laboratory, Norway, 2016
                                                                                                                                                                                                  60. Time scales of mathematics: from basic research to societal application
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    RCN Workshop on the Importance of Mathematics for Value Creation, Lysaker, Norway, 2016
                                                                                                                                                                                                  61. Impact of high abstraction/high performance finite element software in biomedical computing
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    24th International Conference on Domain Decomposition Methods, 2017
                                                                                                                                                                                                  62. The PDEs of our hearts and minds
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    Women in PDEs, Karlsruhe, Germany, 2017
                                                                                                                                                                                                  63. Modelling pulsatility in the context of Normal-Pressure Hydrocephalus via multiple-network poroelasticity
                                                                                                                                                                                                    E. Piersanti, J. J. Lee, K.-A. Mardal and M. E. Rognes
                                                                                                                                                                                                    5th International Conference on Computational and Mathematical Biomedical Engineering, Pittsburgh, US, 2017
                                                                                                                                                                                                  64. Accurate numerical modelling of small collections of cardiac cells
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    FEniCS'17, Luxembourg City, Luxembourg, 2017

                                                                                                                                                                                                  Posters

                                                                                                                                                                                                  1. Dolfin-adjoint: Automatic adjoint models for FEniCS
                                                                                                                                                                                                    S. W. Funke, P. E. Farrell, D. A. Ham and M. E. Rognes
                                                                                                                                                                                                    The 8th International Congress on Industrial and Applied Mathematics, 2015
                                                                                                                                                                                                  2. Dolfin-adjoint, automated adjoint models for FEniCS
                                                                                                                                                                                                    S. W. Funke, P. E. Farrell, D. Ham and M. E. Rognes
                                                                                                                                                                                                    2015
                                                                                                                                                                                                  3. Patient Specific Modeling of Cardiac Mechanics using the Active Strain Formulation
                                                                                                                                                                                                    H. Finsberg, G. Balaban, S. Wall, J. Sundnes and M. E. Rognes
                                                                                                                                                                                                    Geilo Winter School, 2016
                                                                                                                                                                                                  4. The waterscape of the brain
                                                                                                                                                                                                    E. Piersanti and M. E. Rognes
                                                                                                                                                                                                    2016
                                                                                                                                                                                                  5. FEniCS: Sustainable Software Development Practices
                                                                                                                                                                                                    M. S. Alnæs, J. Blechta, J. S. Hale, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
                                                                                                                                                                                                    2017

                                                                                                                                                                                                  Public Outreach

                                                                                                                                                                                                  1. Mathematics that cures us
                                                                                                                                                                                                    M. E. Rognes
                                                                                                                                                                                                    2017

                                                                                                                                                                                                  Gabriela Rutkowska

                                                                                                                                                                                                    Articles in International Journals

                                                                                                                                                                                                    1. Patient-Specific 3D Simulation of Cyclic CSF Flow at the Cranio-Cervical Region
                                                                                                                                                                                                      G. Rutkowska, V. Haughton, S. Linge and K.-A. Mardal
                                                                                                                                                                                                      American Journal of Neuroradiology, vol. 33, pp. 1756—1762, 2012
                                                                                                                                                                                                    2. Estimation of CSF Flow Resistance in the Upper Cervical Spine
                                                                                                                                                                                                      K.-A. Mardal, G. Rutkowska, S. Linge and V. Haughton
                                                                                                                                                                                                      The Neuroradiology Journal, vol. 3, pp. 49—53, 2013

                                                                                                                                                                                                    Talks

                                                                                                                                                                                                    1. Cerebrospinal Fluid Flow in the Upper Cervical Canal in Patients With the Chiari I Malformation
                                                                                                                                                                                                      K.-A. Mardal, K.-H. Støverud, V. Haughton, S. Linge, H. P. Langtangen, G. Rutkowska and I. N. Drøsdal
                                                                                                                                                                                                      1ST CSF Hydrodynamics Symposium, 2011

                                                                                                                                                                                                    Tomas Syrstad Ruud

                                                                                                                                                                                                      Articles in International Journals

                                                                                                                                                                                                      1. Optimal Monodomain Approximations of the Bidomain Equations
                                                                                                                                                                                                        B. F. Nielsen, T. S. Ruud, G. T. Lines and A. Tveito
                                                                                                                                                                                                        Applied Mathematics and Computation, vol. 184, pp. 276—290, 2007
                                                                                                                                                                                                      2. A Computationally Efficient Method for Determining the Size and Location of Myocardial Ischemia
                                                                                                                                                                                                        T. S. Ruud, B. F. Nielsen, O. M. Lysaker and J. Sundnes
                                                                                                                                                                                                        IEEE Transactions on Biomedical Engineering, vol. 56, pp. 263—272, 2009

                                                                                                                                                                                                      Theses

                                                                                                                                                                                                      1. Contributions to Simplifying Bidomain Simulations
                                                                                                                                                                                                        T. S. Ruud
                                                                                                                                                                                                        Ph.D. Thesis, Department of Informatics, University of Oslo, 2009

                                                                                                                                                                                                      Achim Schroll

                                                                                                                                                                                                        Articles in International Journals

                                                                                                                                                                                                        1. On the Accuracy of Operator Splitting As Applied to Discretized Reaction Diffusion Systems
                                                                                                                                                                                                          A. Schroll, G. T. Lines and A. Tveito
                                                                                                                                                                                                          International Journal of Computer Mathematics, vol. 84, pp. 871—885, 2007

                                                                                                                                                                                                        Chapters in Books

                                                                                                                                                                                                        1. Automatic Calibration of Depositional Models
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          in Automated Scientific Computing, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, 2010

                                                                                                                                                                                                        Talks

                                                                                                                                                                                                        1. Well-Based Calibration of Geological Models
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          Mathematisches Forschungsinstitut Oberwolfach, 2008
                                                                                                                                                                                                        2. Automatic Calibration of Depositional Models: an Inverse Problems Approach
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          Talk at 33rd International Geological Congress, Oslo, 2008
                                                                                                                                                                                                        3. On Computational Mathematical Modeling
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          Colloquium, The University of Southern Danmark, 2008
                                                                                                                                                                                                        4. Mathematical Modeling
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          SDU Science Day, 2009
                                                                                                                                                                                                        5. Scientific Computing - the (he)art of Modern Sciences
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          Forskningens Dag, SDU, 2010
                                                                                                                                                                                                        6. Self Calibrating, Adaptive Models in the Geo- and Life Sciences
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          Inverse Problems Workshop, 2011
                                                                                                                                                                                                        7. On Automated Computational Modeling in the Geo- and Life Sciences
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          Numerical methods for hyperbolic equations Recent trends and future directions (SAMHYP), ETH Zürich, Switzerland, 2011
                                                                                                                                                                                                        8. High Resolution FV Methods for Stochastic Balance Laws
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          Intl. Conf. High Performance Scientific Computing, Hanoi, Vietnam, 2012
                                                                                                                                                                                                        9. An Inverse Approach to Stratigraphic Modelling
                                                                                                                                                                                                          S. Clark, L. Vynnytska and A. Schroll
                                                                                                                                                                                                          34th International Geological Congress, Brisbane, Australia, 2012
                                                                                                                                                                                                        10. A DEMOSTRAT Roud-Trip: the Forward and Inverse Model
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          Geilo Winter School, 2012
                                                                                                                                                                                                        11. Strong Stability Preserving Stochastic Runge Kutta Methods
                                                                                                                                                                                                          A. Schroll
                                                                                                                                                                                                          Geilo Winter School, 2012

                                                                                                                                                                                                        Kristoffer Selim

                                                                                                                                                                                                          Articles in International Journals

                                                                                                                                                                                                          1. An Adaptive Finite Element Splitting Method for the Incompressible Navier-Stokes Equations
                                                                                                                                                                                                            K. Selim, A. Logg and M. G. Larson
                                                                                                                                                                                                            Computer Methods in Applied Mechanics and Engineering, vol. 209-212, pp. 54—65, 2012, [DOI]

                                                                                                                                                                                                          Chapters in Books

                                                                                                                                                                                                          1. An Adaptive Finite Element Solver for Fluid-structure Interaction Problems
                                                                                                                                                                                                            K. Selim
                                                                                                                                                                                                            in Automated Solution of Differential Equations by the Finite Element Method, Edited by A. Logg, K.-A. Mardal and G. N. Wells, Springer, pp. 554—572, 2012

                                                                                                                                                                                                          Refereed Proceedings

                                                                                                                                                                                                          1. Simulating Heart Valve Dynamics in FEniCS
                                                                                                                                                                                                            K. Selim and A. Logg
                                                                                                                                                                                                            in MekIT´09. Fifth National Conference on Computational Mechanics, 2009

                                                                                                                                                                                                          Theses

                                                                                                                                                                                                          1. Adaptive Finite Element Methods for Fluid-Structure Interaction and Incompressible Flow
                                                                                                                                                                                                            K. Selim
                                                                                                                                                                                                            Ph.D. Thesis, University of Oslo, 2011

                                                                                                                                                                                                          Talks

                                                                                                                                                                                                          1. Simulating the Heart Valve Dynamics in FEniCS
                                                                                                                                                                                                            K. Selim and A. Logg
                                                                                                                                                                                                            Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                                                                                          2. An Adaptive Finite Element Method for Fluid Structure-Interaction Problems
                                                                                                                                                                                                            K. Selim
                                                                                                                                                                                                            Talk at FEniCS'10, 2010
                                                                                                                                                                                                          3. A Posteriori Error Analysis of Adaptive Finite Element Methods for Fluid-Structure Interaction
                                                                                                                                                                                                            K. Selim
                                                                                                                                                                                                            AC/DC seminar series, 2010

                                                                                                                                                                                                          Dag Sverre Seljebotn

                                                                                                                                                                                                            Articles in International Journals

                                                                                                                                                                                                            1. A Multilevel Solver for Gaussian Constrained CMB Realizations
                                                                                                                                                                                                              D. S. Seljebotn, K.-A. Mardal, J. Jewell, H. K. Eriksen and P. Bull
                                                                                                                                                                                                              The Astrophysical Journal Supplement Series, vol. 210, 2014

                                                                                                                                                                                                            Technical Reports

                                                                                                                                                                                                            1. A Multilevel Solver for Gaussian Constrained CMB Realizations
                                                                                                                                                                                                              D. S. Seljebotn, K.-A. Mardal, J. Jewell, H. K. Eriksen and P. Bull
                                                                                                                                                                                                              2013

                                                                                                                                                                                                            Posters

                                                                                                                                                                                                            1. Figshare
                                                                                                                                                                                                              A. Ahmadia, C. Kees, D. S. Seljebotn, O. Čertík, J. Ring, J. Tang, R. Maynard and V. Braun
                                                                                                                                                                                                              AGU, 2014

                                                                                                                                                                                                            Malin Siklosi

                                                                                                                                                                                                              Refereed Proceedings

                                                                                                                                                                                                              1. Multiscale Modeling of the Acoustic Properties of Lung Parenchyma
                                                                                                                                                                                                                M. Siklosi, O. Jensen, R. Tew and A. Logg
                                                                                                                                                                                                                in Modelling of the Respiratory System Biomechanical, Computational and Mathematical Aspects, 2008

                                                                                                                                                                                                              Talks

                                                                                                                                                                                                              1. Multiscale Modeling of the Acoustic Properties Og Lung Parenchyma
                                                                                                                                                                                                                M. Siklosi
                                                                                                                                                                                                                Talk at CBC Workshop on Biomedical Computing, Simula, 2007

                                                                                                                                                                                                              Bjørn H. Skallerud

                                                                                                                                                                                                                Articles in International Journals

                                                                                                                                                                                                                1. Transversely Isotropic Membrane Shells With Application to Mitral Valve Mechanics. Constitutive Modelling and Finite Element Implementation
                                                                                                                                                                                                                  V. E. Prot, B. H. Skallerud and G. A. Holzapfel
                                                                                                                                                                                                                  International Journal for Numerical Methods in Engineering, vol. 71, pp. 987—1008, 2007, [DOI]
                                                                                                                                                                                                                2. On the Applicability of Bovine Morsellized Cortico-Cancellous Bone As a Substitute for Human Morsellized Cortico-Cancellous Bone for in Vitro Mechanical Testing
                                                                                                                                                                                                                  K. B. Lunde, O. A. Foss and B. H. Skallerud
                                                                                                                                                                                                                  Journal of Biomechanics, vol. 41, pp. 3469—3474, 2008, [DOI]
                                                                                                                                                                                                                3. Two-Parameter Fracture Mechanics and Circumferential Crack Growth in Surface Cracked Pipelines Using Line-Spring Elements
                                                                                                                                                                                                                  E. Berg, B. H. Skallerud and C. Thaulow
                                                                                                                                                                                                                  Engineering Fracture Mechanics, vol. 75, pp. 17—30, 2008, [DOI]
                                                                                                                                                                                                                4. Ultimate Fracture Capacity of Pressurized Pipes With Defects - Comparisons of Large Scale Testing and Numerical Simulations
                                                                                                                                                                                                                  E. Berg, E. Østby, C. Thaulow and B. H. Skallerud
                                                                                                                                                                                                                  Engineering Fracture Mechanics, vol. 75, pp. 2352—2366, 2008, [DOI]
                                                                                                                                                                                                                5. Constitutive Models for Constrained Compression of Unimpacted and Impacted Human Morselized Bone Grafts
                                                                                                                                                                                                                  K. B. Lunde, O. A. Foss, L. Fosse and B. H. Skallerud
                                                                                                                                                                                                                  Journal of Biomechanical Engineering, vol. 130, pp. 61014, 2008, [DOI]
                                                                                                                                                                                                                6. The Fluid Phase of Morsellized Bone: Characterization of Viscosity and Chemical Composition
                                                                                                                                                                                                                  K. B. Lunde, M. Sletmoen, B. T. Stokke and B. H. Skallerud
                                                                                                                                                                                                                  Journal of the Mechanical Behavior of Biomedical Materials, vol. 1, pp. 199—205, 2008, [DOI]
                                                                                                                                                                                                                7. Surface Roughness Characterization for Fatigue Life Predictions Using Finite Element Analysis
                                                                                                                                                                                                                  S. K. Ås, B. H. Skallerud and B. W. Tveiten
                                                                                                                                                                                                                  International Journal of Fatigue, vol. 30, pp. 2200—2209, 2008, [DOI]
                                                                                                                                                                                                                8. Fracture of Anodic-Bonded Silicon-Thin Film Glass-Silicon Triple Stacks
                                                                                                                                                                                                                  L. Y. Shang, Z. L. Shang and B. H. Skallerud
                                                                                                                                                                                                                  Engineering Fracture Mechanics, vol. 75, pp. 1064—1082, 2008, [DOI]
                                                                                                                                                                                                                9. The Modified Cam Clay Model for Constrained Compression of Human Morsellised Bone: Effects of Porosity on the Mechanical Behaviour
                                                                                                                                                                                                                  K. B. Lunde and B. H. Skallerud
                                                                                                                                                                                                                  Journal of the Mechanical Behavior of Biomedical Materials, vol. 2, pp. 43—50, 2009, [DOI]
                                                                                                                                                                                                                10. Evaluation of Fracture Mechanics Parameters for Free Edges in Multi-Layered Structures With Weak Singularities
                                                                                                                                                                                                                  L. Y. Shang, Z. L. Zhang and B. H. Skallerud
                                                                                                                                                                                                                  International Journal of Solids and Structures, vol. 46, pp. 1134—1148, 2009, [DOI]
                                                                                                                                                                                                                11. Finite Element Analysis of the Mitral Apparatus: Annulus Shape Effect and Chordal Force Distribution
                                                                                                                                                                                                                  V. E. Prot, H. Rune and B. H. Skallerud
                                                                                                                                                                                                                  Biomechanics and Modeling in Mechanobiology, vol. 8, pp. 43—55, 2009
                                                                                                                                                                                                                12. Comments on the Evaluation of the Stress Intensity Factor for a General Re-Entrant Corner in Anisotropic Bi-Materials
                                                                                                                                                                                                                  L. Y. Shang, Z. L. Zhang and B. H. Skallerud
                                                                                                                                                                                                                  Engineering Fracture Mechanics, vol. 76, pp. 1373—1379, 2009, [DOI]
                                                                                                                                                                                                                13. Subject Specific Finite Element Analysis of Implant Stability for a Cementless Femoral Stem
                                                                                                                                                                                                                  S. H. Pettersen, T. S. Wik and B. H. Skallerud
                                                                                                                                                                                                                  Clinical Biomechanics, vol. 24, pp. 480—487, 2009, [DOI]
                                                                                                                                                                                                                14. Subject Specific Finite Element Analysis of Stress Shielding Around a Cementless Femoral Stem
                                                                                                                                                                                                                  S. H. Pettersen, T. S. Wik and B. H. Skallerud
                                                                                                                                                                                                                  Clinical Biomechanics, vol. 24, pp. 196—202, 2009, [DOI]
                                                                                                                                                                                                                15. Cyclic Plasticity Modelling for ANDES Thin Shell and Line-Spring Finite Elements
                                                                                                                                                                                                                  E. Berg, K. H. Holthe and B. H. Skallerud
                                                                                                                                                                                                                  International Journal of Applied Mechanics, vol. 1, pp. 201—233, 2009, [DOI]
                                                                                                                                                                                                                16. Nonlinear Solid Finite Element Analysis of Mitral Valves With Heterogeneous Leaflet Layers
                                                                                                                                                                                                                  V. E. Prot and B. H. Skallerud
                                                                                                                                                                                                                  Computational Mechanics, vol. 43, pp. 353—368, 2009
                                                                                                                                                                                                                17. Modeling Active Muscle Contraction in Mitral Valve Leaflets During Systole: a First Approach
                                                                                                                                                                                                                  B. H. Skallerud, V. E. Prot and I. Nordrum
                                                                                                                                                                                                                  Biomechanics and Modeling in Mechanobiology, vol. 10, pp. 11—26, 2010, [DOI]
                                                                                                                                                                                                                18. Wire Tension Versus Wire Frequency: an Experimental Ilizarov Frame Study
                                                                                                                                                                                                                  V. La Russa, B. H. Skallerud, J. Klaksvik and O. A. Foss
                                                                                                                                                                                                                  Journal of Biomechanics, vol. 43, pp. 2327—2331, 2010, [DOI]
                                                                                                                                                                                                                19. Void Coalescence With Or Without Prestrain
                                                                                                                                                                                                                  Z. L. Zhang and B. H. Skallerud
                                                                                                                                                                                                                  International Journal of Damage Mechanics, vol. 19, pp. 153—174, 2010
                                                                                                                                                                                                                20. On Modelling and Analysis of Healthy and Pathological Human Mitral Valves: Two Case Studies
                                                                                                                                                                                                                  V. E. Prot, B. H. Skallerud, G. Sommer and G. A. Holzapfel
                                                                                                                                                                                                                  Journal of the Mechanical Behavior of Biomedical Materials, vol. 3, pp. 167—177, 2010, [DOI]
                                                                                                                                                                                                                21. Impact of Pulmonary Venous Locations on the Intra-Atrial Flow and Mitral Plane Velocity Profile
                                                                                                                                                                                                                  S. K. Dahl, E. Thomassen, L. R. Hellevik and B. H. Skallerud
                                                                                                                                                                                                                  Cardiovascular Engineering and Technology, vol. 3, pp. 2069—281, 2012
                                                                                                                                                                                                                22. FSI-Simulation of Asymmetric Mitral Valve Dynamics During Diastolic Filling
                                                                                                                                                                                                                  S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, L. R. Hellevik and B. H. Skallerud
                                                                                                                                                                                                                  Computer Methods in Biomechanics and Biomedical Engineering, vol. 15, pp. 121—130, 2012
                                                                                                                                                                                                                23. Application of a Strong FSI Coupling Scheme for the Numerical Simulation of Bileaflet Mechanical Heart Valve Dynamics: Study of Wall Shear Stress on the Leaflets
                                                                                                                                                                                                                  S. Annerel, J. Degroote, J. Vierendeels, T. Claessens, P. Van Ransbeeck, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Segers and P. Verdonck
                                                                                                                                                                                                                  Progress in Computational Fluid Dynamics, vol. 12, pp. 68—80, 2012
                                                                                                                                                                                                                24. Muscle Fibers in the Human Mitral Valve: Extent of Smooth Muscle and Implications for Dynamic Modelling
                                                                                                                                                                                                                  I. S. Nordrum and B. H. Skallerud
                                                                                                                                                                                                                  APMIS, vol. 120, pp. 484—494, 2012
                                                                                                                                                                                                                25. A Fast Strong Coupling Algorithm for the Partitioned Fluid-Structure Interaction Simulation of BMHVs
                                                                                                                                                                                                                  S. Annerel, J. Degroote, T. Claessens, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Van Ransbeeck, P. Seegers, P. Verdonck and J. Vierendeels
                                                                                                                                                                                                                  Computer Methods in Biomechanics and Biomedical Engineering, vol. 15, pp. 1281—1312, 2013
                                                                                                                                                                                                                26. Tension behaviour of HNBR and FKM elastomers for a wide range of temperatures
                                                                                                                                                                                                                  A. Ilseng, B. H. Skallerud and A. H. Clausen
                                                                                                                                                                                                                  Journal of Polymer Testing, vol. 49, pp. 128—136, 2016, [DOI]
                                                                                                                                                                                                                27. Contributions of prestrains, hyperelasticity, and muscle fiber activation on mitral valve systolic performance
                                                                                                                                                                                                                  V. E. Prot and B. H. Skallerud
                                                                                                                                                                                                                  International Journal for Numerical Methods in Biomedical Engineering, 2016, [DOI]
                                                                                                                                                                                                                28. Contributions of prestrains, hyperelasticity, and muscle fiber activation on mitral valve systolic performance
                                                                                                                                                                                                                  V. E. Prot and B. H. Skallerud
                                                                                                                                                                                                                  International Journal for Numerical Methods in Biomedical Engineering, 2017
                                                                                                                                                                                                                29. Nanoindentation and finite element modelling of chitosan–alginate multilayer coated hydrogels
                                                                                                                                                                                                                  V. E. Prot, B. T. Stokke, G. Maurstad, T. Sherstova and B. H. Skallerud
                                                                                                                                                                                                                  Soft Matter, 2017

                                                                                                                                                                                                                Edited Books

                                                                                                                                                                                                                1. MekIT´09. Fifth National Conference on Computational Mechanics
                                                                                                                                                                                                                  B. H. Skallerud and H. I. Andersson
                                                                                                                                                                                                                  Tapir Academic Press, 2009

                                                                                                                                                                                                                Chapters in Books

                                                                                                                                                                                                                1. The Optics of Bruising
                                                                                                                                                                                                                  L. L. Randeberg, B. H. Skallerud, N. E. Langlois, O. A. Haugen and L. O. Svaasand
                                                                                                                                                                                                                  in Optical-Thermal Response of Laser-Irradiated Tissue, Edited by A. J. Welch and M. J. van Gemert, Springer, 2010

                                                                                                                                                                                                                Refereed Proceedings

                                                                                                                                                                                                                1. A First-Approach Towards Patient-Specific 2D FSI-Simulation of Mitral Valve Dynamics During Diastolic Filling
                                                                                                                                                                                                                  L. R. Hellevik, S. K. Dahl and B. H. Skallerud
                                                                                                                                                                                                                  in MekIT-07, Fourth national conference on Computational Mechanics, 2007
                                                                                                                                                                                                                2. Effect of Embedded Defects in Pipelines Subjected to Plastic Strains During Operation
                                                                                                                                                                                                                  E. Olsø, E. Berg, K. H. Holthe, B. Nyhus, B. H. Skallerud, C. Thaulow and E. Østby
                                                                                                                                                                                                                  in Proceedings of the Eighteenth (2008) International Offshore and Polar Engineering Conference, 2008
                                                                                                                                                                                                                3. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
                                                                                                                                                                                                                  S. K. Dahl, L. R. Hellevik and B. H. Skallerud
                                                                                                                                                                                                                  in 8th world Congress on Computational Mechanics/5th European Congress on Computational Methods in Applied sciences and Engineering, Venice, Italy, 2008
                                                                                                                                                                                                                4. Subject Specific Finite Element Analysis of Callus Distraction - a Preliminary Study
                                                                                                                                                                                                                  S. H. Pettersen, A. Aamodt, O. A. Foss and B. H. Skallerud
                                                                                                                                                                                                                  in Fifth national conference on Computational Mechanics (MekIT´09), 2009
                                                                                                                                                                                                                5. On Material Modelling of Umbilical Vein
                                                                                                                                                                                                                  P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
                                                                                                                                                                                                                  in Fifth National Conference on Computational Mechanics (MekIT´09), 2009
                                                                                                                                                                                                                6. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
                                                                                                                                                                                                                  S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
                                                                                                                                                                                                                  in MekIT'09. Fifth  national  conference  on  Computational  Mechanics, 2009
                                                                                                                                                                                                                7. Initial Study on Material Modeling of Umbilical Veins in Fetal Sheep
                                                                                                                                                                                                                  P. R. Leinan, L. R. Hellevik, V. E. Prot, T. Kiserud and B. H. Skallerud
                                                                                                                                                                                                                  in 6th World Congress of Biomechanics, 2010
                                                                                                                                                                                                                8. FSI Simulation of the Mitral Valve With Contact and Active Anisotropic Material Models
                                                                                                                                                                                                                  L. R. Hellevik, M. Astorino, P. Moireau, V. E. Prot, B. H. Skallerud and J.-F. Gerbeau
                                                                                                                                                                                                                  in 6th World Congress of Biomechanics, 2010
                                                                                                                                                                                                                9. A Strong Coupling FSI Scheme for Simulating BMHV Dynamics
                                                                                                                                                                                                                  S. Annerel, J. Degroote, T. Claessens, S. K. Dahl, B. H. Skallerud, L. R. Hellevik, P. Van Ransbeeck, P. Segers, P. Verdonck and J. Vierendeels
                                                                                                                                                                                                                  in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                                                                                                                                                10. A Biomechanical Model for Human Umbilical Veins and Wharton's Jelly
                                                                                                                                                                                                                  P. R. Leinan, V. E. Prot, C. N. van den Broek, T. Kiserud, B. H. Skallerud, L. R. Hellevik and F. N. van de Vosse
                                                                                                                                                                                                                  in 8th International Conference on Computational Fluid Dynamics in the Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                                                                                                                                                11. Effects of an Orthogonal Contractile System in the Anterior Leaflet on the Systolic Mitral Valve Response: a Nonlinear Finite Element Study
                                                                                                                                                                                                                  V. E. Prot and B. H. Skallerud
                                                                                                                                                                                                                  in 10th Internation Symposium, Computational Methods in Biomechanics and Biomedical Engineering, 2012
                                                                                                                                                                                                                12. Volumetric compression of HNBR and FKM elastomers
                                                                                                                                                                                                                  A. Ilseng, B. H. Skallerud and A. H. Clausen
                                                                                                                                                                                                                  in 9. European Conference on Constitutive Models for Rubbers IX, Prague, Chech Republic, 2015, 2015
                                                                                                                                                                                                                13. Case study of elastomer seals using FEM
                                                                                                                                                                                                                  A. Ilseng, B. H. Skallerud and A. Clausen
                                                                                                                                                                                                                  in MekIT'15 8th National Conference on Computational Mechanics, Trondheim, Norway, 2015

                                                                                                                                                                                                                Conference Proceedings

                                                                                                                                                                                                                1. On the Biomechanical Analysis of Bruises
                                                                                                                                                                                                                  B. H. Skallerud, A. Winnem, L. L. Randeberg and L. Svaasand
                                                                                                                                                                                                                  in 21st Nordic Seminar on Computational Mechanics, 2008
                                                                                                                                                                                                                2. Alternative Elasticity Modeling Approaches for Mitral Valve Analysis: Consequences for Stress and Deformation Prediction
                                                                                                                                                                                                                  B. H. Skallerud and V. E. Prot
                                                                                                                                                                                                                  in Proceeding of the 22nd Nordic Seminar on Computational Mechanics, 2009
                                                                                                                                                                                                                3. Tissue Fiber Families in the Mitral Valve - Constitutive Modelling Numerical Analysis and Potential Clinical Application
                                                                                                                                                                                                                  B. H. Skallerud
                                                                                                                                                                                                                  in Proceeding of the 22nd Nordic Seminar on Computational Mechanics, 2009

                                                                                                                                                                                                                Talks

                                                                                                                                                                                                                1. Effects on Connective Tissue Pathologies on Mitral Valve Response
                                                                                                                                                                                                                  V. E. Prot, B. H. Skallerud and G. A. Holzapfel
                                                                                                                                                                                                                  Talk at the Conference on Modeling of heterogeneous materials with application in construction and biomedical engineering, Prague, 2007
                                                                                                                                                                                                                2. Modeling of the Mitral Valve in the Heart
                                                                                                                                                                                                                  B. H. Skallerud
                                                                                                                                                                                                                  Talk at CBC Workshop on Biomedical Computing, Simula, 2007
                                                                                                                                                                                                                3. Surface and Embedded Crack in the Offshore Pipelines Subjected to Plastic Strains
                                                                                                                                                                                                                  E. Berg, B. H. Skallerud and K. H. Holthe
                                                                                                                                                                                                                  Talk at the 6th international Conference on Computation of Shell and Spatial Structures, 2008
                                                                                                                                                                                                                4. A 2D Patient-Specific FSI Assessment of Mitral Valve Dynamics During Diastolic Filling
                                                                                                                                                                                                                  S. K. Dahl, L. R. Hellevik and B. H. Skallerud
                                                                                                                                                                                                                  Presented at 8th.World Congress on Computational Mechanics (WCCM8)/5th European Congress on Computational Methods in Applied Sciences and Engineeering (ECCOMAS 2008), Venice, Italy, 2008
                                                                                                                                                                                                                5. Solid Versus Membrane Finite Elements in Analysis of the Mitral Valve: a Case Study
                                                                                                                                                                                                                  V. E. Prot and B. H. Skallerud
                                                                                                                                                                                                                  Talk at the 6th International Conference on Computation of Shell & Spatial Structures, 2008
                                                                                                                                                                                                                6. Alternative Elasticity Modeling Approaches for Mitral Valve Analysis: Consequences for Stress and Deformation Prediction
                                                                                                                                                                                                                  B. H. Skallerud and V. E. Prot
                                                                                                                                                                                                                  Talk at the 22nd Nordic seminar on Computational Mechanics, Aalborg, Denmark, October 22-23 2009, 2009
                                                                                                                                                                                                                7. Tissue Fiber Families in the Mitral Valve - Constitutive Modelling Numerical Analysis and Potensial Clinical Application
                                                                                                                                                                                                                  B. H. Skallerud
                                                                                                                                                                                                                  Invited keynote talk at the 22nd Nordic Seminar on Computational Mechanics, Aalborg, Denmark, October 22-23 2009, 2009
                                                                                                                                                                                                                8. Implicit Interaction of Two Rigid Mitral Leaflets in a Partitioned Fluid-Structure Approach
                                                                                                                                                                                                                  S. K. Dahl, J. Vierendeels, J. Degroote, S. Annerel, B. H. Skallerud and L. R. Hellevik
                                                                                                                                                                                                                  Talk at MekIT'09, Trondheim, May 27th, 2009
                                                                                                                                                                                                                9. Subject Specific Finite Element Analysis of a Callus Distraction - a Preliminary Study
                                                                                                                                                                                                                  S. H. Pettersen, A. Aamodt, O. A. Foss and B. H. Skallerud
                                                                                                                                                                                                                  Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009
                                                                                                                                                                                                                10. Effect of Mitral Valve Shape on Flow Dynamics During Left Ventricular Contraction
                                                                                                                                                                                                                  S. K. Dahl and B. H. Skallerud
                                                                                                                                                                                                                  World Congress in Biomechanics, Singapore, 2010
                                                                                                                                                                                                                11. Finite Element Analysis of the Mitral Valve With Active Muscle Fibres
                                                                                                                                                                                                                  V. E. Prot and B. H. Skallerud
                                                                                                                                                                                                                  SIAM CSE Reno, Nevada, USA, 2011
                                                                                                                                                                                                                12. Contributions of residual strains, hyperelasticity models, and muscle fiber activation on mitral valve systolic performance
                                                                                                                                                                                                                  B. H. Skallerud and V. E. Prot
                                                                                                                                                                                                                  9. European Solid Mechanics Conference, Madrid, 2015, 2015

                                                                                                                                                                                                                Ola Skavhaug

                                                                                                                                                                                                                  Articles in International Journals

                                                                                                                                                                                                                  1. A Linear System of Partial Differential Equations Modeling the Resting Potential of a Heart With Regional Ischemia
                                                                                                                                                                                                                    M. C. MacLachlan, J. Sundnes, O. Skavhaug, O. M. Lysaker, B. F. Nielsen and A. Tveito
                                                                                                                                                                                                                    Mathematical Biosciences, vol. 210, pp. 238—252, 2007
                                                                                                                                                                                                                  2. Using Python to Solve Partial Differential Equations
                                                                                                                                                                                                                    K.-A. Mardal, O. Skavhaug, G. T. Lines, G. A. Staff and Å. Ødegård
                                                                                                                                                                                                                    Computing in Science & Engineering, vol. 9, pp. 48—51, 2007
                                                                                                                                                                                                                  3. Penalty Methods for the Numerical Solution of American Multi-Asset Option Problems
                                                                                                                                                                                                                    B. F. Nielsen, O. Skavhaug and A. Tveito
                                                                                                                                                                                                                    Journal of Computational and Applied Mathematics, vol. 222, pp. 3—16, 2008
                                                                                                                                                                                                                  4. Unified Framework for Finite Element Assembly
                                                                                                                                                                                                                    M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
                                                                                                                                                                                                                    International Journal of Computational Science and Engineering, vol. 4, pp. 231—244, 2009
                                                                                                                                                                                                                  5. A Second Order Algorithm for Solving Dynamic Cell Membrane Equations
                                                                                                                                                                                                                    J. Sundnes, R. Artebrant, O. Skavhaug and A. Tveito
                                                                                                                                                                                                                    IEEE Transactions on Biomedical Engineering, vol. 56, pp. 2546—2548, 2009
                                                                                                                                                                                                                  6. Existence of Excitation Waves for a Collection of Cardiomyocytes Electrically Coupled to Fibroblasts
                                                                                                                                                                                                                    A. Tveito, G. T. Lines, R. Artebrant, O. Skavhaug and M. Maleckar
                                                                                                                                                                                                                    Mathematical Biosciences, vol. 230, pp. 79—86, 2011, [DOI]
                                                                                                                                                                                                                  7. Unstable Eigenmodes As Possible Drivers for Cardiac Arrhythmias
                                                                                                                                                                                                                    A. Tveito, G. T. Lines, O. Skavhaug and M. Maleckar
                                                                                                                                                                                                                    Journal of the Royal Society Interface, vol. 8, pp. 1212—6, 2011
                                                                                                                                                                                                                  8. N-Version Benchmark Evaluation of Cardiac Tissue Electrophysiology Simulators
                                                                                                                                                                                                                    S. A. Niederer, E. Kerfoot, A. Benson, M. Bernabeu, O. Bernus, E. Cherry, R. Clayton, F. Fenton, A. Garny, E. Heidenreich, S. Land, M. Maleckar, P. Pathmanathan, G. Plank, J. Rodriguez, I. Roy, F. Sachse, G. Seemann, O. Skavhaug and N. P. Smith
                                                                                                                                                                                                                    Philosophical Transactions of the Royal Society A, vol. 369, pp. 4331—51, 2011, [DOI]
                                                                                                                                                                                                                  9. Computing the Stability of Steady-State Solutions of Mathematical Models of the Electrical Activity in the Heart
                                                                                                                                                                                                                    A. Tveito, O. Skavhaug, G. T. Lines and R. Artebrant
                                                                                                                                                                                                                    Mathematical Biosciences and Engineering, vol. 41, pp. 611—618, 2011, [DOI]
                                                                                                                                                                                                                  10. Simple T wave metrics may better predict early ischemia as compared to ST segment
                                                                                                                                                                                                                    G. T. Lines, B. L. de Oliveira, O. Skavhaug and M. Maleckar
                                                                                                                                                                                                                    IEEE Transactions on Biomedical Engineering, 2016, [DOI]

                                                                                                                                                                                                                  Chapters in Books

                                                                                                                                                                                                                  1. A Hybrid Approach to Efficient Finite Element Code Development
                                                                                                                                                                                                                    A. Logg, K.-A. Mardal, M. S. Alnæs, H. P. Langtangen and O. Skavhaug
                                                                                                                                                                                                                    in Petascale Computing - Algorithms and Applications, Edited by D. A. Bader, Chapman and Hall, 2007

                                                                                                                                                                                                                  Manuals

                                                                                                                                                                                                                  1. UFC Specification and User Manual 1.0
                                                                                                                                                                                                                    M. S. Alnæs, A. Logg, K.-A. Mardal, O. Skavhaug and H. P. Langtangen
                                                                                                                                                                                                                    2007

                                                                                                                                                                                                                  Talks

                                                                                                                                                                                                                  1. Software Components for Solving PDEs
                                                                                                                                                                                                                    A. Logg and O. Skavhaug
                                                                                                                                                                                                                    Talk at Modelling and Computation of Biomedical Processess Workshop, Simula Oslo, 2007-06-12, 2007
                                                                                                                                                                                                                  2. Using Python for Scientific Computing
                                                                                                                                                                                                                    O. Skavhaug
                                                                                                                                                                                                                    CBC Seminar on advanced use of Python programming language, 2010

                                                                                                                                                                                                                  Jarle Sogn

                                                                                                                                                                                                                    Talks

                                                                                                                                                                                                                    1. Nitsche Based Methods for Unfitted Meshes for the Brinkman Problem
                                                                                                                                                                                                                      J. Sogn
                                                                                                                                                                                                                      CBC seminar series, 2013

                                                                                                                                                                                                                    Mohammed Sourouri

                                                                                                                                                                                                                      Articles in International Journals

                                                                                                                                                                                                                      1. Scalable heterogeneous CPU-GPU computations for unstructured tetrahedral meshes
                                                                                                                                                                                                                        J. Langguth, M. Sourouri, G. T. Lines, S. Baden and X. Cai
                                                                                                                                                                                                                        IEEE Micro, vol. 35, pp. 6—15, 2015, [DOI]
                                                                                                                                                                                                                      2. Panda: A Compiler Framework for Concurrent CPU+GPU Execution of 3D Stencil Computations on GPU-accelerated Supercomputers
                                                                                                                                                                                                                        M. Sourouri, S. Baden and X. Cai
                                                                                                                                                                                                                        International Journal of Parallel Programming, 2016, [DOI]

                                                                                                                                                                                                                      Refereed Proceedings

                                                                                                                                                                                                                      1. A New Parallel 3D Front Propagation Algorithm for Fast Simulation of Geological Folds
                                                                                                                                                                                                                        T. Gillberg, M. Sourouri and X. Cai
                                                                                                                                                                                                                        in The International Conference on Computational Science, ICCS 2012, 2012
                                                                                                                                                                                                                      2. Effective Multi-GPU Communication Using Multiple CUDA Streams and Threads
                                                                                                                                                                                                                        M. Sourouri, T. Gillberg, S. Baden and X. Cai
                                                                                                                                                                                                                        in 20th International Conference on Parallel and Distributed Systems (ICPADS 2014), 2014
                                                                                                                                                                                                                      3. CPU+GPU Programming of Stencil Computations for Resource-Efficient Use of GPU Clusters
                                                                                                                                                                                                                        M. Sourouri, J. Langguth, F. Spiga, S. Baden and X. Cai
                                                                                                                                                                                                                        in IEEE 18th International Conference on Computational Science and Engineering, 2015
                                                                                                                                                                                                                      4. On the Performance and Energy Efficiency of the PGAS Programming Model on Multicore Architectures
                                                                                                                                                                                                                        J. Lagravière, J. Langguth, M. Sourouri and X. Cai
                                                                                                                                                                                                                        in High Performance Computing & Simulation (2016) - International Workshop on Optimization of Energy Efficient HPC & Distributed Systems, 2016

                                                                                                                                                                                                                      Technical Reports

                                                                                                                                                                                                                      1. Parallel Solvers for Static Hamilton-Jacobi Equations in Three Dimensions
                                                                                                                                                                                                                        T. Gillberg, A. M. Bruaset, M. Sourouri and Ø. Hjelle
                                                                                                                                                                                                                        Simula Research Laboratory, 2013

                                                                                                                                                                                                                      Theses

                                                                                                                                                                                                                      1. Scalable Heterogeneous Supercomputing: Programming Methodologies and Automated Code Generation
                                                                                                                                                                                                                        M. Sourouri
                                                                                                                                                                                                                        Ph.D. Thesis, UiO, 2015

                                                                                                                                                                                                                      Talks

                                                                                                                                                                                                                      1. Automated Code Generation for Coupling Heterogeneous Computing Devices
                                                                                                                                                                                                                        M. Sourouri
                                                                                                                                                                                                                        Extreme Scaling Workshop 2013, Boulder, CO, USA, 2013

                                                                                                                                                                                                                      Jacob Sturdy

                                                                                                                                                                                                                        Articles in International Journals

                                                                                                                                                                                                                        1. A guide to uncertainty quantification and sensitivity analysis for cardiovascular applications
                                                                                                                                                                                                                          V. G. Eck, W. P. Donders, J. Sturdy, J. Feinberg, T. Delhaas and L. R. Hellevik
                                                                                                                                                                                                                          International Journal for Numerical Methods in Biomedical Engineering, vol. 32, 2016, [DOI]
                                                                                                                                                                                                                        2. Effects of arterial wall models and measurement uncertainties on cardiovascular model predictions
                                                                                                                                                                                                                          V. G. Eck, J. Sturdy and L. R. Hellevik
                                                                                                                                                                                                                          Journal of Biomechanics, 2017, [DOI]
                                                                                                                                                                                                                        3. Modeling the differentiation of A- and C-type baroreceptor firing patterns
                                                                                                                                                                                                                          J. Sturdy, J. T. Ottesen and M. S. Olufsen
                                                                                                                                                                                                                          Journal of Computational Neuroscience, 2017

                                                                                                                                                                                                                        Refereed Proceedings

                                                                                                                                                                                                                        1. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                                                                                                                                                                                                          V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                                                                                                                                                                                          in 4th International Conference on Computational and Mathematical Biomedical Engineering (CMBE), Paris, June 29-July 3, 2015
                                                                                                                                                                                                                        2. Towards robust clinical assessment of arterial compliance
                                                                                                                                                                                                                          J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                                                                                                                                                          in 28th Nordic Seminar on Computational Mechanics, 2015
                                                                                                                                                                                                                        3. Uncertainty quantification of short term baroreflex regulation of blood pressure
                                                                                                                                                                                                                          J. Sturdy, V. G. Eck and L. R. Hellevik
                                                                                                                                                                                                                          in CMBE15, 4th International Conference on Computational & Mathematical Biomedical Engineering, 2015
                                                                                                                                                                                                                        4. A Validation of Coupling Carotid and Aortic Baroreflex Models to a 1D Blood Flow Model of the Systemic Arterial Tree
                                                                                                                                                                                                                          J. Sturdy, V. G. Eck and L. R. Hellevik
                                                                                                                                                                                                                          in ICCB 2015, VI International Conference on Computational Bioengineering, 2015
                                                                                                                                                                                                                        5. Uncertainty quantification and sensitivity analysis for wave propagation models of the arterial systemic circulation
                                                                                                                                                                                                                          V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                                                                                                                                                                                          in ICCB 2015, VI International Conference on Computational Bioengineering, Barcelona, 2015, 2015

                                                                                                                                                                                                                        Talks

                                                                                                                                                                                                                        1. Sensitivity Analysis and Uncertainty Quantification in a Wave Propagation Model: A Study of Uncertain Arterial Stiffness
                                                                                                                                                                                                                          V. G. Eck, J. Feinberg, J. Sturdy, H. P. Langtangen and L. R. Hellevik
                                                                                                                                                                                                                          4th International Conference on Computational and Mathematical Biomedical Engineering, France, 2015
                                                                                                                                                                                                                        2. Towards robust clinical assessment of arterial compliance
                                                                                                                                                                                                                          J. Sturdy, V. G. Eck, J. Feinberg, H. P. Langtangen and L. R. Hellevik
                                                                                                                                                                                                                          28th Nordic Seminar on Computational Mechanics, 2015

                                                                                                                                                                                                                        Karen-Helene Støverud

                                                                                                                                                                                                                          Articles in International Journals

                                                                                                                                                                                                                          1. CSF Flow in Chiari I and Syringomyelia From the Perspective of Computational Fluid Dynamics
                                                                                                                                                                                                                            K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                                                                                                            The Neuroradiology Journal, vol. 24, pp. 20—23, 2011
                                                                                                                                                                                                                          2. Modeling Concentration Distribution and Deformation During Convection-Enhanced Drug Delivery Into Brain Tissue
                                                                                                                                                                                                                            K.-H. Støverud, M. Darcis, R. Helmig and S. Hassanizadeh
                                                                                                                                                                                                                            Transport in Porous Media, vol. 92, pp. 119—143, 2012, [DOI]
                                                                                                                                                                                                                          3. Effect of the Central Canal in the Spinal Cord on Fluid Movement Within the Cord
                                                                                                                                                                                                                            I. N. Drøsdal, K.-A. Mardal, K.-H. Støverud and V. Haughton
                                                                                                                                                                                                                            The Neuroradiology Journal, vol. 26, pp. 585—590, 2013
                                                                                                                                                                                                                          4. Poro-elastic modeling of Syringomyelia – a systematic study of the effects of pia mater, central canal, median fissure, white and gray matter on pressure wave propagation and fluid movement within the cervical spinal cord
                                                                                                                                                                                                                            K.-H. Støverud, M. S. Alnæs, H. P. Langtangen, V. Haughton and K.-A. Mardal
                                                                                                                                                                                                                            Computer Methods in Biomechanics and Biomedical Engineering, vol. 19, pp. 686—698, 2015, [DOI]
                                                                                                                                                                                                                          5. Computational Investigation of Cerebrospinal Fluid Dynamics in the Posterior Cranial Fossa and Cervical Subarachnoid Space in Patients with Chiari I Malformation
                                                                                                                                                                                                                            K.-H. Støverud, H. P. Langtangen, G. A. Ringstad, P. K. Eide and K.-A. Mardal
                                                                                                                                                                                                                            PLOS ONE, 2016

                                                                                                                                                                                                                          Refereed Proceedings

                                                                                                                                                                                                                          1. Porous and Viscous Flow Modeling on the Study of Cyst Development in the Human Spinal Cord
                                                                                                                                                                                                                            I. N. Drøsdal, V. Haughton, K.-A. Mardal and K.-H. Støverud
                                                                                                                                                                                                                            in 8th International Conference on CFD in Oil & Gas, Metallurgical and Process Industries, 2011
                                                                                                                                                                                                                          2. The Effect of Varying Cross-Sectional Areas on Cerebrospinal Fluid Flow and Pressure in the Cervical Spine
                                                                                                                                                                                                                            K.-H. Støverud, K.-A. Mardal, H. P. Langtangen and V. Haughton
                                                                                                                                                                                                                            in MekIT'11. Sixth national conference on Computational Mechanics, 2011
                                                                                                                                                                                                                          3. Cyclic Cerebrospinal Fluid Flow (I): Towards the Understanding of Cerebrospinal Fluid Flow Dynamics in Chiari I Malformation
                                                                                                                                                                                                                            S. Linge, V. Haughton, A. E. Løvgren, K.-A. Mardal, A. Helgeland, H. P. Langtangen and K.-H. Støverud
                                                                                                                                                                                                                            in ASNR 49th Annual Meeting & the Foundation of the ASNR Symposium, June 4 - 9, 2011., 2011
                                                                                                                                                                                                                          4. Effect of Oscillatory Cerebrospinal Fluid Pressure on Fluid Movement in the Spinal Cord
                                                                                                                                                                                                                            K.-H. Støverud, K.-A. Mardal and H. P. Langtangen
                                                                                                                                                                                                                            in Seventh National Conference on Computational Mechanics (MekIT'13), 2013

                                                                                                                                                                                                                          Conference Proceedings

                                                                                                                                                                                                                          1. CSF Flow in Chiari I and Syringomyelia - From the Perspective of Fluid Dynamics
                                                                                                                                                                                                                            K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                                                                                                            in Proceedings of the XIX Symposium Neuroradiologicum, Bologna, Italy, 2010

                                                                                                                                                                                                                          Theses

                                                                                                                                                                                                                          1. Relation Between the Chiari I Malformation and Syringomyelia From a Mechanical Perspective
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            Ph.D. Thesis, University of Oslo, 2014

                                                                                                                                                                                                                          Talks

                                                                                                                                                                                                                          1. Cerebrospinal Fluid (CSF) - Oscillating Flow and Pressure
                                                                                                                                                                                                                            K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                                                                                                            CBC Workshop on Aerosols: Dispersion, Transport and Effects, Simula, November 10, 2010
                                                                                                                                                                                                                          2. CSF Hydrodynamic in Patients With Syringomyelia and Chiari I Malformations
                                                                                                                                                                                                                            K.-H. Støverud, K.-A. Mardal, V. Haughton and H. P. Langtangen
                                                                                                                                                                                                                            Annual NUPUS meeting in Freudenstadt, 2010
                                                                                                                                                                                                                          3. From a Physical Problem to Computer Simulations
                                                                                                                                                                                                                            K.-H. Støverud, K.-A. Mardal and H. P. Langtangen
                                                                                                                                                                                                                            CBC Workshop on Cerebrospinal Fluid Flow in the Brain and Spinal Canal - Clinical, Experimental and Mathematical Models and Problems, Simula, May 28, 2010
                                                                                                                                                                                                                          4. Cerebrospinal Fluid Flow in the Upper Cervical Canal in Patients With the Chiari I Malformation
                                                                                                                                                                                                                            K.-A. Mardal, K.-H. Støverud, V. Haughton, S. Linge, H. P. Langtangen, G. Rutkowska and I. N. Drøsdal
                                                                                                                                                                                                                            1ST CSF Hydrodynamics Symposium, 2011
                                                                                                                                                                                                                          5. Ongoing Research: Characterize CSF Flow and Identify the Cause of Syringomyelia With CFD
                                                                                                                                                                                                                            K.-H. Støverud and V. Haughton
                                                                                                                                                                                                                            The workshop Working Toward a Day Without Pain Gala, Buffalo, 2011
                                                                                                                                                                                                                          6. Cerebrospinal Fluid (CSF) Flow in Chiari I and Syringomyelia
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            CBC Seminar / Third semester presentation, 2011
                                                                                                                                                                                                                          7. The Use and Potential of FEniCS in Medical Applications
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011, 2011
                                                                                                                                                                                                                          8. CSF Flow and Pressure in the Cervical Spine
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            CBC Workshop on Biomedical Modeling, 2011
                                                                                                                                                                                                                          9. Cerebrospinal Fluid (CSF) Oscillating Flow and Pressure
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            CBC Workshop on CSF Flow Associated with Chiari and Syringomyelia, 2011
                                                                                                                                                                                                                          10. The Effect of Varying Cross-Sectional Areas on Cerebrospinal Fluid Flow and Pressure in the Cervical Spine
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            MekIT'11 Sixth national conference on Computational Mechanics, 2011
                                                                                                                                                                                                                          11. The Relation Between Chiari I and Syringomyelia -Model Concepts
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            CBC Workshop on Adjoint-Based Methods for Transient Problems: Software and applications, 2012
                                                                                                                                                                                                                          12. Relation Between Chiari Malformation and Syringomyelia
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            Summer School on Modeling and Simulation of Soft Tissue BioMechanics, 2012
                                                                                                                                                                                                                          13. CSF Flow Dynamics: Effects of Viscosity and Inertia
                                                                                                                                                                                                                            K.-H. Støverud, V. Haughton, H. P. Langtangen and K.-A. Mardal
                                                                                                                                                                                                                            ANSR 2012, New York, 2012
                                                                                                                                                                                                                          14. Magnetic Resonance Imaging (MRI) - the Basics
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            CBC Seminar series, 2012
                                                                                                                                                                                                                          15. Effects of Pulsatile CSF Pressure on the Spinal Cord Tissue
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            CBC Seminar series, 2012
                                                                                                                                                                                                                          16. Effect of Oscillatory CSF Pressure on Fluid Movement in the Spinal Cord
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            V International Symposium on Modelling Physiological Flow (MPF2013), 2013
                                                                                                                                                                                                                          17. Effect of Oscillatory Cerebrospinal Fluid Pressure on the Spinal Cord Tissue
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            CBC seminar series, 2013
                                                                                                                                                                                                                          18. On the Assumption of Laminar Flow of CSF in Chiari Patients
                                                                                                                                                                                                                            K.-A. Mardal, A. Helgeland, V. Haughton, B. A. P. Reif and K.-H. Støverud
                                                                                                                                                                                                                            international Chiari Research Group, 2014
                                                                                                                                                                                                                          19. CSF Flow at Foramen Magnum
                                                                                                                                                                                                                            K.-A. Mardal, K.-H. Støverud, G. Ringstad and P. K. Eide
                                                                                                                                                                                                                            International Hydrocephalus Imaging Working Group,Montreal, Canada, 2014
                                                                                                                                                                                                                          20. Cerebrospinal Fluid Flow in Association With the Central Nervous System - Chiari and Drug Delivery
                                                                                                                                                                                                                            K.-A. Mardal, K.-H. Støverud, M. Mortensen, K. Jain, B. Martin and S. Pahlavian
                                                                                                                                                                                                                            MS on Computational Biomechanics, WCCM-ECCM-ECCOM, 2014
                                                                                                                                                                                                                          21. On the complexity of the Cerebrospinal fluid flow in the upper spinal column – is the assumption of laminar flow appropriate?
                                                                                                                                                                                                                            K.-A. Mardal, K. Jain, K.-H. Støverud, G. Ringstad and P. K. Eide
                                                                                                                                                                                                                            Cerebrospinal Fluid Dynamics Society Meeting, Amiens, 2015

                                                                                                                                                                                                                          Public Outreach

                                                                                                                                                                                                                          1. Kan Matematikk Hjelpe Pasienter Som Har Så Lite Hode at De Blir Kronisk Syke?
                                                                                                                                                                                                                            K.-H. Støverud
                                                                                                                                                                                                                            2013

                                                                                                                                                                                                                          Huayou Su

                                                                                                                                                                                                                            Articles in International Journals

                                                                                                                                                                                                                            1. Resource-Efficient Utilization of CPU/GPU-Based Heterogeneous Supercomputers for Bayesian Phylogenetic Inference
                                                                                                                                                                                                                              J. Chai, H. Su, M. Wen, X. Cai, N. Wu and C. Zhang
                                                                                                                                                                                                                              The Journal of Supercomputing, vol. 66, pp. 364—380, 2013, [DOI]
                                                                                                                                                                                                                            2. Balancing Efficiency and Accuracy for Sediment Transport Simulations
                                                                                                                                                                                                                              W. Wei, S. Clark, H. Su, M. Wen and X. Cai
                                                                                                                                                                                                                              Computational Science & Discovery, vol. 6, pp. 015011, 2013, [DOI]
                                                                                                                                                                                                                            3. High Efficient Sedimentary Basin Simulations on Hybrid CPU-GPU Clusters
                                                                                                                                                                                                                              M. Wen, H. Su, W. Wei, N. Wu, X. Cai and C. Zhang
                                                                                                                                                                                                                              Cluster Computing, vol. 17, pp. 359—369, 2014, [DOI]
                                                                                                                                                                                                                            4. Towards Simulation of Subcellular Calcium Dynamics at Nanometre Resolution
                                                                                                                                                                                                                              J. Chai, J. E. Hake, N. Wu, M. Wen, X. Cai, G. T. Lines, J. Yang, H. Su, C. Zhang and X. Liao
                                                                                                                                                                                                                              International Journal of High Performance Computing Applications, vol. 29, pp. 51—63, 2015, [DOI]
                                                                                                                                                                                                                            5. An Analytical GPU Performance Model for 3D Stencil Computations from the Angle of Data Traffic
                                                                                                                                                                                                                              H. Su, X. Cai, M. Wen and C. Zhang
                                                                                                                                                                                                                              The Journal of Supercomputing, vol. 71, pp. 2433—2453, 2015, [DOI]

                                                                                                                                                                                                                            Refereed Proceedings

                                                                                                                                                                                                                            1. Performance of Sediment Transport Simulations on NVIDIA's Kepler Architecture
                                                                                                                                                                                                                              H. Su, N. Wu, M. Wen, C. Zhang and X. Cai
                                                                                                                                                                                                                              in The International Conference on Computational Science, ICCS 2013, 2013

                                                                                                                                                                                                                            Joakim Sundnes

                                                                                                                                                                                                                              Articles in International Journals

                                                                                                                                                                                                                              1. A Comparison of Non-Standard Solvers for ODEs Describing Cellular Reactions in the Heart
                                                                                                                                                                                                                                M. C. MacLachlan, J. Sundnes and R. J. Spiteri
                                                                                                                                                                                                                                Computer Methods in Biomechanics and Biomedical Engineering, vol. 10, pp. 317—326, 2007
                                                                                                                                                                                                                              2. A Linear System of Partial Differential Equations Modeling the Resting Potential of a Heart With Regional Ischemia
                                                                                                                                                                                                                                M. C. MacLachlan, J. Sundnes, O. Skavhaug, O. M. Lysaker, B. F. Nielsen and A. Tveito
                                                                                                                                                                                                                                Mathematical Biosciences, vol. 210, pp. 238—252, 2007
                                                                                                                                                                                                                              3. An Unconditionally Stable Numerical Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
                                                                                                                                                                                                                                M. Hanslien, J. Sundnes and A. Tveito
                                                                                                                                                                                                                                Mathematical Biosciences, vol. 208, pp. 375—392, 2007
                                                                                                                                                                                                                              4. On the Frequency of Automaticity During Ischemia in Simulations Based on Stochastic Perturbations of the Luo-Rudy 1 Model
                                                                                                                                                                                                                                S. Linge, G. T. Lines, J. Sundnes and A. Tveito
                                                                                                                                                                                                                                Computers in Biology and Medicine, vol. 38, pp. 1218—1227, 2008
                                                                                                                                                                                                                              5. A Note on Discontinues Rate Functions for the Gate Variables in Mathematical Models of Cardiac Cells
                                                                                                                                                                                                                                M. Hanslien, J. Sundnes and N. Holden
                                                                                                                                                                                                                                Procedia Computer Science, vol. 1, pp. 945—950, 2008
                                                                                                                                                                                                                              6. A Computationally Efficient Method for Determining the Size and Location of Myocardial Ischemia
                                                                                                                                                                                                                                T. S. Ruud, B. F. Nielsen, O. M. Lysaker and J. Sundnes
                                                                                                                                                                                                                                IEEE Transactions on Biomedical Engineering, vol. 56, pp. 263—272, 2009
                                                                                                                                                                                                                              7. An Unconditionally Stable Second Order Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
                                                                                                                                                                                                                                M. Hanslien, R. Artebrant, J. Sundnes and A. Tveito
                                                                                                                                                                                                                                International Journal of Numerical Analysis and Modeling, vol. 6, pp. 627—641, 2009
                                                                                                                                                                                                                              8. A Second Order Algorithm for Solving Dynamic Cell Membrane Equations
                                                                                                                                                                                                                                J. Sundnes, R. Artebrant, O. Skavhaug and A. Tveito
                                                                                                                                                                                                                                IEEE Transactions on Biomedical Engineering, vol. 56, pp. 2546—2548, 2009
                                                                                                                                                                                                                              9. Numerical Solution of the Bidomain Equations
                                                                                                                                                                                                                                S. Linge, J. Sundnes, M. Hanslien, G. T. Lines and A. Tveito
                                                                                                                                                                                                                                Philosophical Transactions of the Royal Society A, vol. 367, pp. 1931—1951, 2009
                                                                                                                                                                                                                              10. Aproaching Cardiac Modeling Challenges to Computer Science With CellMl-Based Web Tools
                                                                                                                                                                                                                                R. S. Campos, R. M. Amorim, C. M. Costa, B. L. de Oliveira, C. Barbosa, J. Sundnes and R. W. d. Santos
                                                                                                                                                                                                                                Future Generation Computer Systems, vol. 26, pp. 462—470, 2009
                                                                                                                                                                                                                              11. Uncertainty Analysis of Ventricular Mechanics Using the Probabilistic Collocation Method
                                                                                                                                                                                                                                H. Osnes and J. Sundnes
                                                                                                                                                                                                                                IEEE Transactions on Biomedical Engineering, vol. 59, pp. 2171—2179, 2012
                                                                                                                                                                                                                              12. Electromechanical Feedback With Reduced Cellular Connectivity Alters Electrical Activity in an Infarct Injured Left Ventricle - a Finite Element Model Study
                                                                                                                                                                                                                                S. Wall, J. Guccione, M. Ratcliffe and J. Sundnes
                                                                                                                                                                                                                                American Journal of Physiology - Heart and Circulatory Physiology, pp. H206—H214, 2012, [DOI]
                                                                                                                                                                                                                              13. Effects of Deformation on Transmural Dispersion of Repolarization Using in Silico Models of Human Left Ventricular Wedge
                                                                                                                                                                                                                                B. L. de Oliveira, L. P. d. S. Barra, E. M. Toledo, J. Sundnes and R. W. d. Santos
                                                                                                                                                                                                                                International Journal for Numerical Methods in Biomedical Engineering, vol. 29, pp. 1323—1337, 2013
                                                                                                                                                                                                                              14. Stable Time Integration Suppresses Unphysical Oscillations in the Bidomain Model
                                                                                                                                                                                                                                S. T. Ziaratgahi, M. Marsh, J. Sundnes and R. J. Spiteri
                                                                                                                                                                                                                                Frontiers in Physics, vol. 2, 2014
                                                                                                                                                                                                                              15. Improved Discretisation and Linearisation of Active Tension in Strongly Coupled Cardiac Electro-Mechanics Simulations
                                                                                                                                                                                                                                J. Sundnes, S. Wall, H. Osnes, T. Thorvaldsen and A. D. McCulloch
                                                                                                                                                                                                                                Computer Methods in Biomechanics and Biomedical Engineering, vol. 17, pp. 604—15, 2014
                                                                                                                                                                                                                              16. Increased Membrane Capacitance Is the Dominant Mechanism of Stretch-Dependent Conduction Slowing in the Rabbit Heart: a Computational Study
                                                                                                                                                                                                                                B. L. de Oliveira, J. Sundnes, S. Wall and A. D. McCulloch
                                                                                                                                                                                                                                Cellular and Molecular Bioengineering, vol. 8, pp. 237—246, 2015
                                                                                                                                                                                                                              17. An integrated electromechanical-growth heart model for simulating cardiac therapies
                                                                                                                                                                                                                                L. C. Lee, J. Sundnes, M. Genet, J. F. Wenk and S. Wall
                                                                                                                                                                                                                                Biomechanics and Modeling in Mechanobiology, vol. 15, pp. 791—803, 2015
                                                                                                                                                                                                                              18. Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
                                                                                                                                                                                                                                S. Land, S. Arens, C. M. Augustin, L. Baron, S. Castro, A. Crozier, M. Favino, T. E. Fastl, T. Fritz, H. Gao, A. Gizzi, B. E. Griffith, D. E. Hurtado, R. Krause, X. Luo, M. P. Nash, S. Pezzuto, G. Plank, S. Rossi, D. Ruprecht, G. Seemann, N. P. Smith, J. Sundnes, J. Rice, N. A. Trayanova, D. Wang, Z. J. Wang and S. A. Niederer
                                                                                                                                                                                                                                Proceedings of the Royal Society A, vol. 471, 2015
                                                                                                                                                                                                                              19. Adjoint Multi-Start Based Estimation of Cardiac Hyperelastic Material Parameters using Shear Data
                                                                                                                                                                                                                                G. Balaban, M. S. Alnæs, J. Sundnes and M. E. Rognes
                                                                                                                                                                                                                                Biomechanics and Modeling in Mechanobiology, pp. 1—13, 2016
                                                                                                                                                                                                                              20. Space-discretization error analysis and stabilization schemes for conduction velocity in cardiac electrophysiology
                                                                                                                                                                                                                                S. Pezzuto, J. E. Hake and J. Sundnes
                                                                                                                                                                                                                                International Journal for Numerical Methods in Biomedical Engineering, 2016, [DOI]
                                                                                                                                                                                                                              21. Physics-based computer simulation of the long-term effects of cardiac regenerative therapies
                                                                                                                                                                                                                                L. C. Lee, J. Sundnes, M. Genet and S. T. Wall
                                                                                                                                                                                                                                Technology, vol. 4, pp. 23–29, 2016
                                                                                                                                                                                                                              22. Methodology for morphometric analysis of modern human contralateral premolars
                                                                                                                                                                                                                                G. F. Johnsen, J. Sundnes, J. Wengenroth and H. J. Haugen
                                                                                                                                                                                                                                Journal of Computer Assisted Tomography, vol. 40, pp. 617—625, 2016
                                                                                                                                                                                                                              23. An integrated electromechanical-growth heart model for simulating cardiac therapies
                                                                                                                                                                                                                                L. C. Lee, J. Sundnes, M. Genet, J. F. Wenk and S. T. Wall
                                                                                                                                                                                                                                Biomechanics and modeling in mechanobiology, vol. 15, pp. 791–803, 2016
                                                                                                                                                                                                                              24. High resolution data assimilation of cardiac mechanics
                                                                                                                                                                                                                                G. Balaban, H. Finsberg, H. H. Odland, M. E. Rognes, S. Ross, J. Sundnes and S. Wall
                                                                                                                                                                                                                                International journal for numerical methods in biomedical engineering, 2017, [DOI]
                                                                                                                                                                                                                              25. An Evaluation of the Accuracy of Classical Models for Computing the Membrane Potential and Extracellular Potential for Neurons
                                                                                                                                                                                                                                A. Tveito, K. H. Jæger, G. T. Lines, Ł. Paszkowski, J. Sundnes, A. Edwards, T. Mäki-Marttunen, G. Halnes and G. T. Einevoll
                                                                                                                                                                                                                                Frontiers in Computational Neuroscience, vol. 11, pp. 27, 2017

                                                                                                                                                                                                                              Chapters in Books

                                                                                                                                                                                                                              1. Scientific Computing: Why - How - What - What's Next
                                                                                                                                                                                                                                H. P. Langtangen and J. Sundnes
                                                                                                                                                                                                                                in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 237—248, 2009
                                                                                                                                                                                                                              2. Computer Simulations of the Heart
                                                                                                                                                                                                                                G. T. Lines and J. Sundnes
                                                                                                                                                                                                                                in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 259—276, 2009
                                                                                                                                                                                                                              3. Patient–Specific Parameter Estimation for a Transversely Isotropic Active Strain Model of Left Ventricular Mechanics
                                                                                                                                                                                                                                S. U. Gjerald, J. E. Hake, S. Pezzuto, J. Sundnes and S. Wall
                                                                                                                                                                                                                                in Lecture Notes in Computer Science, Springer International Publishing, pp. 93–104, 2014
                                                                                                                                                                                                                              4. Bidomain Model: Computation
                                                                                                                                                                                                                                J. Sundnes
                                                                                                                                                                                                                                in Encyclopedia of Applied and Computational Mathematics, Edited by B. Engquist, Springer Berlin Heidelberg, pp. 125—128, 2015
                                                                                                                                                                                                                              5. Electro-Mechanical Coupling in Cardiac Tissue
                                                                                                                                                                                                                                J. Sundnes
                                                                                                                                                                                                                                in Encyclopedia of Applied and Computational Mathematics, Edited by B. Engquist, Springer Berlin Heidelberg, 2015

                                                                                                                                                                                                                              Refereed Proceedings

                                                                                                                                                                                                                              1. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
                                                                                                                                                                                                                                M. S. Alnæs, K.-A. Mardal and J. Sundnes
                                                                                                                                                                                                                                in Fourth national conference on Computational Mechanics (MekIT'07), 2007
                                                                                                                                                                                                                              2. Bioinformatics' Challenges to Computer Science
                                                                                                                                                                                                                                M. Cannataro, M. Romberg, R. W. d. Santos and J. Sundnes
                                                                                                                                                                                                                                in Proceedings of the 8th international conference on Computational Science, Part III, 2008
                                                                                                                                                                                                                              3. Uncertainty Analysis of the Mechanics of the Heart
                                                                                                                                                                                                                                H. Osnes, S. Clark and J. Sundnes
                                                                                                                                                                                                                                in Proceedings of the Twenty Second Nordic Seminar on Computational Mechanics, 2009
                                                                                                                                                                                                                              4. A Two Dimensional Model of Coupled Electromechanics in Cardiac Tissue
                                                                                                                                                                                                                                B. M. Rocha, B. L. de Oliveira, R. W. d. Santos, E. T. Magalhães, L. P. d. S. Barra and J. Sundnes
                                                                                                                                                                                                                                in Proceedings of the World Congress on Medical Physics and Biomedical Engineering, 2009
                                                                                                                                                                                                                              5. The Development of a New Computational Model for the Electromechanics of the Human Myocyte
                                                                                                                                                                                                                                B. L. de Oliveira, J. Sundnes and R. W. d. Santos
                                                                                                                                                                                                                                in 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2010
                                                                                                                                                                                                                              6. 3D Heart Modeling With Cellular Automata, Mass-Spring System and CUDA
                                                                                                                                                                                                                                R. S. Campos, R. M. Amorim, B. L. de Oliveira, J. Sundnes, L. P. d. S. Barra, M. Lobosco and R. W. d. Santos
                                                                                                                                                                                                                                in Parallel computing technologies, 2013
                                                                                                                                                                                                                              7. Patient–Specific Parameter Estimation for a Transversely Isotropic Active Strain Model of Left Ventricular Mechanics
                                                                                                                                                                                                                                S. U. Gjerald, J. E. Hake, S. Pezzuto, J. Sundnes and S. Wall
                                                                                                                                                                                                                                in Statistical Atlases and Computational Models of the Heart-Imaging and Modelling Challenges, 2015
                                                                                                                                                                                                                              8. Personalized Cardiac Mechanical Model using a High Resolution Contraction Field
                                                                                                                                                                                                                                H. Finsberg, G. Balaban, J. Sundnes, M. E. Rognes, H.-H. Odland, S. Ross and S. Wall
                                                                                                                                                                                                                                in VPH16 Translating VPH to the Clinic, 2016

                                                                                                                                                                                                                              Conference Proceedings

                                                                                                                                                                                                                              1. Least Squares Fitting of a Cardiac Hyperelasticity Model Using an Automatically Derived Adjoint Equation
                                                                                                                                                                                                                                G. Balaban, J. Sundnes, M. S. Alnæs and M. E. Rognes
                                                                                                                                                                                                                                in Proceedings of NSCM-27: the 27th Nordic Seminar on Computational Mechanics, 2014
                                                                                                                                                                                                                              2. Personalization of a Cardiac Compuational Model using Clinical Measurements
                                                                                                                                                                                                                                H. Finsberg, G. Balaban, J. Sundnes, M. E. Rognes and S. Wall
                                                                                                                                                                                                                                in 28th Nordic Seminar on Computational Mechanics, 2015
                                                                                                                                                                                                                              3. Optimization of a Spatially Varying Cardiac Contraction parameter using the Adjoint Method
                                                                                                                                                                                                                                H. Finsberg, G. Balaban, M. E. Rognes, J. Sundnes and S. Wall
                                                                                                                                                                                                                                in FEniCS'16, 2016

                                                                                                                                                                                                                              Talks

                                                                                                                                                                                                                              1. Using Mathematical Models to Test Physiological Hypotheses
                                                                                                                                                                                                                                J. Sundnes
                                                                                                                                                                                                                                Invited talk at the annual meeting of the Scandinavian Physiological Society, 2007
                                                                                                                                                                                                                              2. Application of Symbolic Finite Element Tools to Nonlinear Hyperelasticity
                                                                                                                                                                                                                                M. S. Alnæs, K.-A. Mardal and J. Sundnes
                                                                                                                                                                                                                                Talk at MekIT'07: Fourth National Conference on Computational Mechanics, 2007
                                                                                                                                                                                                                              3. Computational Techniques for Heart Muscle Mechanics
                                                                                                                                                                                                                                J. Sundnes
                                                                                                                                                                                                                                Minisymposium talk at ICIAM 07, Zurich, 2007
                                                                                                                                                                                                                              4. Software Components for Biomedical Flows
                                                                                                                                                                                                                                J. Sundnes
                                                                                                                                                                                                                                National seminar on medical technology, NFA (Norsk forening for automatisering), 2007
                                                                                                                                                                                                                              5. A Finite Element Model of Cardiac Electrophysiology and Mechanics
                                                                                                                                                                                                                                J. Sundnes, M. S. Alnæs and K.-A. Mardal
                                                                                                                                                                                                                                VII International conference on computational plasticity, 2007
                                                                                                                                                                                                                              6. Computational Challenges in Mathematical Models of the Heart
                                                                                                                                                                                                                                J. Sundnes
                                                                                                                                                                                                                                Talk at Norwegian University of Life Sciences, January 30th, 2008
                                                                                                                                                                                                                              7. Computer Modeling of Cardiac Electro-Mechanics - Models and Numerical Methods
                                                                                                                                                                                                                                J. Sundnes, S. Wall and H. Osnes
                                                                                                                                                                                                                                Talk at Cardiac Modeling seminar, Simula Research Laboratory, 2009
                                                                                                                                                                                                                              8. Multiscale Models of Physiological Systems
                                                                                                                                                                                                                                J. Sundnes
                                                                                                                                                                                                                                Guest lecture at the course Bioinformatics for molecular biology, University of Oslo, 2009
                                                                                                                                                                                                                              9. Simulation of Strongly Coupled Electro-Mechanics in an Infarcted Left Ventricle
                                                                                                                                                                                                                                J. Sundnes, S. Wall and H. Osnes
                                                                                                                                                                                                                                Invited talk at the workshop Bidomain 2009, University of Graz, 2009
                                                                                                                                                                                                                              10. The Baby Justicia Project: Biomechanical Investigations of the Shaken Baby Syndrome (SBS)
                                                                                                                                                                                                                                A. Blechingberg, K.-A. Mardal, F. Strisland, J. Sundnes, T. O. Rognum, Å. Vege, M. Weensvangen and A. Stray-Pedersen
                                                                                                                                                                                                                                WCB2010, Seminar session, Head/Brain Injury - Models, 2010
                                                                                                                                                                                                                              11. Strongly Coupled Electro-Mechanics Simulations of the Infarct Injured Heart
                                                                                                                                                                                                                                J. Sundnes and S. Wall
                                                                                                                                                                                                                                International Conference on Numerical Methods and Applied Mathematics, Greece, 2011
                                                                                                                                                                                                                              12. Computer Simulations of Electro-Mechanical Interactions in the Heart
                                                                                                                                                                                                                                J. Sundnes and S. Wall
                                                                                                                                                                                                                                CBC Workshop on Adjoint-Based Methods for Transient Problems: Software and Applications, 2012
                                                                                                                                                                                                                              13. On the Stability of Operator Splitting Schemes for Strongly Coupled Cardiac Electro-Mechanics
                                                                                                                                                                                                                                J. Sundnes and S. Wall
                                                                                                                                                                                                                                World Congress on Computational Mechanics, Sao Paulo, Brazil, 2012
                                                                                                                                                                                                                              14. Strongly Coupled Simulations of Cardiac Electro-Mechanics
                                                                                                                                                                                                                                J. Sundnes and S. Wall
                                                                                                                                                                                                                                CBC seminar, 2012
                                                                                                                                                                                                                              15. Numerical Methods for Strongly Coupled Simulations of Cardiac Electro-Mechanics
                                                                                                                                                                                                                                J. Sundnes and S. Wall
                                                                                                                                                                                                                                Workshop on efficient solvers in biomedical applications, Graz, Austria, 2012
                                                                                                                                                                                                                              16. Computer Models of Electro-Mechanical Interactions in the Contracting Heart
                                                                                                                                                                                                                                J. Sundnes and S. Wall
                                                                                                                                                                                                                                Workshop on computational models in biomedicine, Federal University of Juiz de Fora, Brazil, 2012
                                                                                                                                                                                                                              17. Computer Models of Electro-Mechanical Interactions in the Contracting Heart
                                                                                                                                                                                                                                J. Sundnes and S. Wall
                                                                                                                                                                                                                                Seminar at the Norwegian Defence Research Establishment, 2012
                                                                                                                                                                                                                              18. Towards Patient-Specific Models of Strongly Coupled Cardiac Electro-Mechanics
                                                                                                                                                                                                                                J. Sundnes, S. Wall and S. U. Gjerald
                                                                                                                                                                                                                                Cardiac Physiome Workshop, San Diego, 2012
                                                                                                                                                                                                                              19. Computational Models of Electro-Mechanical Interactions in the Infarct Injured Heart
                                                                                                                                                                                                                                J. Sundnes and S. Wall
                                                                                                                                                                                                                                National PhD conference in medical Imaging, Trondheim, Norway, 2012
                                                                                                                                                                                                                              20. Patient-Specific Models of Cardiac Electro-Mechanics
                                                                                                                                                                                                                                J. Sundnes, S. Wall, S. U. Gjerald, J. E. Hake and B. L. de Oliveira
                                                                                                                                                                                                                                Federal University of Juiz de Fora, 2013
                                                                                                                                                                                                                              21. A Continuum Model for Active Cardiac Muscle
                                                                                                                                                                                                                                J. Sundnes and H. Narayanan
                                                                                                                                                                                                                                World congress on Computational Mechanics, Barcelona, Spain, 2014
                                                                                                                                                                                                                              22. Patient Specific Models of Cardiac Electro-Mechanics
                                                                                                                                                                                                                                J. Sundnes, S. Wall, S. U. Gjerald, J. E. Hake and B. L. de Oliveira
                                                                                                                                                                                                                                Seminar at Ecole des Mines, St Etienne, France, 2014
                                                                                                                                                                                                                              23. Computational Models of Electro-Mechanical Interactions in the Heart
                                                                                                                                                                                                                                J. Sundnes, S. Wall, S. Pezzuto, J. E. Hake and B. L. de Oliveira
                                                                                                                                                                                                                                Invited mini symposium presentation at the European Conference for Mathematics in Industry, Taormina, Italy., 2014
                                                                                                                                                                                                                              24. Computational Models of Electro-Mechanical Interactions in the Heart
                                                                                                                                                                                                                                J. Sundnes
                                                                                                                                                                                                                                The Nordic Seminar on Computational Mechanics, Stockholm, 2014
                                                                                                                                                                                                                              25. Identifying the Parameters of the Heart: Variational Data Assimilation in Cardiac Mechanics Using Dolfin-Adjoint
                                                                                                                                                                                                                                M. E. Rognes, G. Balaban, J. Sundnes and M. S. Alnæs
                                                                                                                                                                                                                                FEniCS '15, Imperial College London, UK, 2015
                                                                                                                                                                                                                              26. Computational models of electro-mechanical interactions in the heart
                                                                                                                                                                                                                                J. Sundnes, S. U. Gjerald and S. Wall
                                                                                                                                                                                                                                University of Uppsala, 2015
                                                                                                                                                                                                                              27. Significance of passive material parameters in mechanical models of the heart
                                                                                                                                                                                                                                S. Kallhovd, J. Sundnes and S. Wall
                                                                                                                                                                                                                                Lugano, Switzerland, 2015
                                                                                                                                                                                                                              28. Impact of material parameter uncertainty on stress in patient specific models of the heart
                                                                                                                                                                                                                                J. Sundnes, S. Kallhovd and S. Wall
                                                                                                                                                                                                                                SIAM Conference on uncertainty quantification, Lausanne, Switzerland, 2016
                                                                                                                                                                                                                              29. Impact of material parameter variations on stress in patient specific models of the heart
                                                                                                                                                                                                                                J. Sundnes, S. Kallhovd and S. Wall
                                                                                                                                                                                                                                World Congress on Computational Mechanics, Seoul, South Korea, 2016
                                                                                                                                                                                                                              30. A Computational Model for the Identification of Atrial Stunning Pathways
                                                                                                                                                                                                                                B. L. de Oliveira and J. Sundnes
                                                                                                                                                                                                                                2017 EMI International Conference, 2017

                                                                                                                                                                                                                              Posters

                                                                                                                                                                                                                              1. Mechano-electric feedback as a source of ectopic activity
                                                                                                                                                                                                                                J. Sundnes, S. Wall, V. Timmermann and A. Tveito
                                                                                                                                                                                                                                Gordon Research Conference on Arrhythmia Mechanisms, Lucca, Italy, 2015
                                                                                                                                                                                                                              2. Patient Specific Modeling of Cardiac Mechanics using the Active Strain Formulation
                                                                                                                                                                                                                                H. Finsberg, G. Balaban, S. Wall, J. Sundnes and M. E. Rognes
                                                                                                                                                                                                                                Geilo Winter School, 2016
                                                                                                                                                                                                                              3. Mechanical Analysis of Pulmonary Hypertension via Adjoint based Data Assimilation of a Finite Element Model
                                                                                                                                                                                                                                H. Finsberg, C. Xi, J. Tan, L. Zhong, L. Lee, J. Sundnes and S. Wall
                                                                                                                                                                                                                                2017

                                                                                                                                                                                                                              Viviane Timmermann

                                                                                                                                                                                                                                Posters

                                                                                                                                                                                                                                1. Mechano-electric feedback as a source of ectopic activity
                                                                                                                                                                                                                                  J. Sundnes, S. Wall, V. Timmermann and A. Tveito
                                                                                                                                                                                                                                  Gordon Research Conference on Arrhythmia Mechanisms, Lucca, Italy, 2015

                                                                                                                                                                                                                                Kirsten ten Tusscher

                                                                                                                                                                                                                                  Articles in International Journals

                                                                                                                                                                                                                                  1. Modeling of the Ventricular Conduction System
                                                                                                                                                                                                                                    K. t. Tusscher and A. V. Panfilov
                                                                                                                                                                                                                                    Progress in Biophysics and Molecular Biology, vol. 96, pp. 152—170, 2008
                                                                                                                                                                                                                                  2. Effect of Heterogeneous APD Restitution on VF Organization in a Model of the Human Ventricles
                                                                                                                                                                                                                                    R. H. Keldermann, K. t. Tusscher, M. Nash, R. Hren, P. Taggart and A. V. Panfilov
                                                                                                                                                                                                                                    American Journal of Physiology - Heart and Circulatory Physiology, vol. 294, pp. H764—H774, 2008
                                                                                                                                                                                                                                  3. A Computational Study of Mother Rotor VF in the Human Ventricles
                                                                                                                                                                                                                                    R. H. Keldermann, K. t. Tusscher, M. Nash, C. P. Bradley, R. Hren, P. Taggart and A. V. Panfilov
                                                                                                                                                                                                                                    American Journal of Physiology - Heart and Circulatory Physiology, vol. 296, pp. H370—H379, 2009
                                                                                                                                                                                                                                  4. Organization of Ventricular Fibrillation in the Human Heart: Experiments and Models
                                                                                                                                                                                                                                    K. t. Tusscher, A. Mourad, M. P. Nash, R. H. Clayton, C. P. Bradley, D. J. Paterson, R. Hren, M. Hayward, A. V. Panfilov and P. Taggart
                                                                                                                                                                                                                                    Experimental Physiology, vol. 94, pp. 553—562, 2009
                                                                                                                                                                                                                                  5. The Role of Genome and Gene Regulatory Network Canalization in the Evolution of Multi-Trait Polymorphisms and Sympatric Speciation.
                                                                                                                                                                                                                                    K. t. Tusscher and P. Hogeweg
                                                                                                                                                                                                                                    BMC Evolutionary Biology, vol. 9, pp. 159, 2009

                                                                                                                                                                                                                                  Talks

                                                                                                                                                                                                                                  1. The Role of Genome and Regulatory Network Architecture Canalization in the Evolution of Multi-Trait Polymorphism and Sympatric Speciation.
                                                                                                                                                                                                                                    K. t. Tusscher
                                                                                                                                                                                                                                    presentation at the Centre for Ecological and Evolutionary Synthesis at the University of Oslo, Department of Biology, 2008
                                                                                                                                                                                                                                  2. Evolutionary Biology for Non-Biologists
                                                                                                                                                                                                                                    K. t. Tusscher
                                                                                                                                                                                                                                    talk at the yearly CBC seminar, 2008
                                                                                                                                                                                                                                  3. Genome and Gene Regulatory Network Canalization in the Evolution of Polymorhism and Sympatric Speciation.
                                                                                                                                                                                                                                    K. t. Tusscher
                                                                                                                                                                                                                                    presentationat Symposium Celebrating 30 years of Bioinformatics at Utrecht University, 2008
                                                                                                                                                                                                                                  4. Computational Biology of Cardiac Arrhythmias and Evolutionary Processes
                                                                                                                                                                                                                                    K. t. Tusscher
                                                                                                                                                                                                                                    invited talk, May 2009, Dundee, 2009
                                                                                                                                                                                                                                  5. Genetic Architecture in Polymorphism and Sympatric Speciation
                                                                                                                                                                                                                                    K. t. Tusscher
                                                                                                                                                                                                                                    workshop talk, July 2009, Vienna, 2009
                                                                                                                                                                                                                                  6. Evolution of Complex, Differentiated Body Plans, Work in Progress
                                                                                                                                                                                                                                    K. t. Tusscher
                                                                                                                                                                                                                                    invited talk, April 2009, Groningen, 2009
                                                                                                                                                                                                                                  7. The Role of Genome and Gene Regulatory Network Canalization in the Evolution of Multi-Trait Polymorphisms and Sympatric Speciation
                                                                                                                                                                                                                                    K. t. Tusscher
                                                                                                                                                                                                                                    invited talk, September 2009, Groningen, 2009

                                                                                                                                                                                                                                  Murat Tutkun

                                                                                                                                                                                                                                    Articles in International Journals

                                                                                                                                                                                                                                    1. Three-Component Vectorial Proper Orthogonal Decomposition of Axisymmetric Wake Behind a Disk
                                                                                                                                                                                                                                      M. Tutkun, P. B. V. Johansson and W. K. George
                                                                                                                                                                                                                                      AIAA Journal, vol. 46, pp. 1118—1134, 2008, [DOI]
                                                                                                                                                                                                                                    2. In Situ Calibration of Hot Wire Probes in Turbulent Flows
                                                                                                                                                                                                                                      M. Tutkun, W. K. George, J. M. Foucat, S. Coudert, M. Stanislas and J. Delville
                                                                                                                                                                                                                                      Experiments in Fluids, vol. 46, pp. 617—629, 2009, [DOI]
                                                                                                                                                                                                                                    3. Mind the Gap: a Guideline for Large Eddy Simulation
                                                                                                                                                                                                                                      W. K. George and M. Tutkun
                                                                                                                                                                                                                                      Philosophical Transactions of the Royal Society A, vol. 367, pp. 2839—2847, 2009, [DOI]
                                                                                                                                                                                                                                    4. Double Large Field Stereoscopic PIV in a High Reynolds Number Turbulent Boundary Layer
                                                                                                                                                                                                                                      S. Coudert, J. M. Foucaut, J. Kostas, M. Stanislas, P. Braud, C. Fourment, J. Delville, M. Tutkun, F. Mehdi, P. B. V. Johansson and W. K. George
                                                                                                                                                                                                                                      Experiments in Fluids, vol. 50, pp. 1—12, 2009, [DOI]
                                                                                                                                                                                                                                    5. Two-Point Correlations in High Reynolds Number Flat Plate Turbulent Boundary Layers
                                                                                                                                                                                                                                      M. Tutkun, W. K. George, J. Delville, M. Stanislas, P. B. V. Johansson, J. M. Foucaut and S. Coudert
                                                                                                                                                                                                                                      Journal of Turbulence, vol. 10, 2009, [DOI]
                                                                                                                                                                                                                                    6. Dispersion of Legionella-Containing Aerosols From a Biological Treatment Plant
                                                                                                                                                                                                                                      J. M. Blatny, H. E. Fossum, J. Ho, M. Tutkun, G. Skogan, Ø. Andreassen, E. M. Fykse, V. Waagen and B. A. P. Reif
                                                                                                                                                                                                                                      Frontiers in Bioscience, vol. E3, pp. 1300—1309, 2011

                                                                                                                                                                                                                                    Refereed Proceedings

                                                                                                                                                                                                                                    1. Space-Time Correlations From a 143 Hot-Wire Rake in High Reynold Number Turbulent Boundary Layer
                                                                                                                                                                                                                                      M. Tutkun, W. K. George, J. Delville, J. M. Foucaut, S. Coudert and M. Stanislas
                                                                                                                                                                                                                                      in AIAA Theoretical Fluid Mechanics Conference, 2008
                                                                                                                                                                                                                                    2. Proper Orthogonal Decomposition of Velocity and Scalar Fields in Shear Generated Turbulence
                                                                                                                                                                                                                                      M. Tutkun, B. A. P. Reif, P. B. V. Johansson and J. Werne
                                                                                                                                                                                                                                      in MekIT´09. Fifth national conference on Computational Mechanics, 2009
                                                                                                                                                                                                                                    3. Modeling the Dispersion and Transport of Aerosols Emitted From Industrial Facility During 2005 and 2008 Outbreaks of Legionnaire's Disease in Norway
                                                                                                                                                                                                                                      H. E. Fossum, M. Tutkun, B. A. P. Reif and Ø. Andreassen
                                                                                                                                                                                                                                      in Sixth national conference on Computational Mechanics (MekIT'11), 2011
                                                                                                                                                                                                                                    4. Verification of Markovian Properties of Turbulent Boundary Layer at High Reynolds Number
                                                                                                                                                                                                                                      M. Fredbo and M. Tutkun
                                                                                                                                                                                                                                      in Sixth national conference on Computational Mechanics (MekIT'11), 2011

                                                                                                                                                                                                                                    Conference Proceedings

                                                                                                                                                                                                                                    1. Two-Point Cross-Spectral and POD Analysis of High Reynold Number Zero Pressure Gradient Turbulent Boundary Layer
                                                                                                                                                                                                                                      M. Tutkun, W. K. George, J. M. Foucaut, S. Coudert, M. Stanislas and J. Delville
                                                                                                                                                                                                                                      in Bulletin of American Physical Society, 61th Annual meeting of the APS Division of fluid dynamics, 2008
                                                                                                                                                                                                                                    2. Measuring Spectra With Burst-Mode LDA
                                                                                                                                                                                                                                      C. Velte, W. K. George, M. Tutkun and B. Frohnapfel
                                                                                                                                                                                                                                      in Bulletin of the American Physical Society, 61th Annual meeting of the APS Division of fluid dynamics, 2008

                                                                                                                                                                                                                                    Theses

                                                                                                                                                                                                                                    1. Structure of Zero Pressure Gradient High Reynolds Number Turbulent Boundary Layersn
                                                                                                                                                                                                                                      M. Tutkun
                                                                                                                                                                                                                                      Ph.D. Thesis, Chalmers University of Technology, 2008

                                                                                                                                                                                                                                    Talks

                                                                                                                                                                                                                                    1. Stochastic Analysis of Turbulence: N-Scale and N-Point Correlations in Homogeneous an Inhomogeneous Turbulent Flows
                                                                                                                                                                                                                                      R. Stresing, M. Tutkun, S. Lück and J. Peinke
                                                                                                                                                                                                                                      Presented at the iTi Conference on Turbulence III, Bertinoro, Italy, 2008
                                                                                                                                                                                                                                    2. Large Scale Structures of High Reynold Number Turbulent Boundary Layers
                                                                                                                                                                                                                                      M. Tutkun
                                                                                                                                                                                                                                      Invited talk at the Workshop on Wall Bounded Shear Flows: Transistion and Turbulence, Cambridge University, Isaac Newton Institute for Mathematical Science, 2008
                                                                                                                                                                                                                                    3. Proper Orthogonal Decomposition of Velocity and Scalar Fields in Shear Generated Turbulence
                                                                                                                                                                                                                                      M. Tutkun, B. A. P. Reif, P. B. V. Johansson and J. Werne
                                                                                                                                                                                                                                      Talk at MekIT'09: Fifth National Conference on Computational Mechanics, Trondheim, May 26-27, 2009

                                                                                                                                                                                                                                    Aslak Tveito

                                                                                                                                                                                                                                      Articles in International Journals

                                                                                                                                                                                                                                      1. On the Accuracy of Operator Splitting As Applied to Discretized Reaction Diffusion Systems
                                                                                                                                                                                                                                        A. Schroll, G. T. Lines and A. Tveito
                                                                                                                                                                                                                                        International Journal of Computer Mathematics, vol. 84, pp. 871—885, 2007
                                                                                                                                                                                                                                      2. Optimal Monodomain Approximations of the Bidomain Equations
                                                                                                                                                                                                                                        B. F. Nielsen, T. S. Ruud, G. T. Lines and A. Tveito
                                                                                                                                                                                                                                        Applied Mathematics and Computation, vol. 184, pp. 276—290, 2007
                                                                                                                                                                                                                                      3. An Order Optimal Solver for the Discretized Bidomain Equations
                                                                                                                                                                                                                                        K.-A. Mardal, B. F. Nielsen, X. Cai and A. Tveito
                                                                                                                                                                                                                                        Numerical Linear Algebra with Applications, vol. 14, pp. 83—98, 2007
                                                                                                                                                                                                                                      4. A Linear System of Partial Differential Equations Modeling the Resting Potential of a Heart With Regional Ischemia
                                                                                                                                                                                                                                        M. C. MacLachlan, J. Sundnes, O. Skavhaug, O. M. Lysaker, B. F. Nielsen and A. Tveito
                                                                                                                                                                                                                                        Mathematical Biosciences, vol. 210, pp. 238—252, 2007
                                                                                                                                                                                                                                      5. An Unconditionally Stable Numerical Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
                                                                                                                                                                                                                                        M. Hanslien, J. Sundnes and A. Tveito
                                                                                                                                                                                                                                        Mathematical Biosciences, vol. 208, pp. 375—392, 2007
                                                                                                                                                                                                                                      6. A Note on the Efficiency of the Conjugate Gradient Method for a Class of Time-Dependent Problems
                                                                                                                                                                                                                                        X. Cai, B. F. Nielsen and A. Tveito
                                                                                                                                                                                                                                        Numerical Linear Algebra with Applications, vol. 14, pp. 459—467, 2007
                                                                                                                                                                                                                                      7. On the Use of the Resting Potential and Level Set Methods for Identifying Ischemic Heart Disease; an Inverse Problem
                                                                                                                                                                                                                                        B. F. Nielsen, O. M. Lysaker and A. Tveito
                                                                                                                                                                                                                                        Journal of Computational Physics, vol. 220, pp. 772—790, 2007
                                                                                                                                                                                                                                      8. Penalty Methods for the Numerical Solution of American Multi-Asset Option Problems
                                                                                                                                                                                                                                        B. F. Nielsen, O. Skavhaug and A. Tveito
                                                                                                                                                                                                                                        Journal of Computational and Applied Mathematics, vol. 222, pp. 3—16, 2008
                                                                                                                                                                                                                                      9. On the Frequency of Automaticity During Ischemia in Simulations Based on Stochastic Perturbations of the Luo-Rudy 1 Model
                                                                                                                                                                                                                                        S. Linge, G. T. Lines, J. Sundnes and A. Tveito
                                                                                                                                                                                                                                        Computers in Biology and Medicine, vol. 38, pp. 1218—1227, 2008
                                                                                                                                                                                                                                      10. A Condition for Setting Off Ectopic Waves in Computational Models of Excitable Cells
                                                                                                                                                                                                                                        A. Tveito and G. T. Lines
                                                                                                                                                                                                                                        Mathematical Biosciences, vol. 213, pp. 141—150, 2008, [DOI]
                                                                                                                                                                                                                                      11. Preconditioning by Inverting the Laplacian; an Analysis of the Eigenvalues
                                                                                                                                                                                                                                        B. F. Nielsen, A. Tveito and W. Hackbusch
                                                                                                                                                                                                                                        IMA Journal of Numerical Analysis, vol. 29, pp. 24—42, 2009
                                                                                                                                                                                                                                      12. Synchronizing Computer Simulations With Measurement Data for a Case of Atrial Flutter
                                                                                                                                                                                                                                        G. T. Lines, S. Linge, M. C. MacLachlan and A. Tveito
                                                                                                                                                                                                                                        Annals of Biomedical Engineering, vol. 37, pp. 1287—1293, 2009
                                                                                                                                                                                                                                      13. An Unconditionally Stable Second Order Method for the Luo-Rudy 1 Model Used in Simulations of Defibrillation
                                                                                                                                                                                                                                        M. Hanslien, R. Artebrant, J. Sundnes and A. Tveito
                                                                                                                                                                                                                                        International Journal of Numerical Analysis and Modeling, vol. 6, pp. 627—641, 2009
                                                                                                                                                                                                                                      14. A Second Order Algorithm for Solving Dynamic Cell Membrane Equations
                                                                                                                                                                                                                                        J. Sundnes, R. Artebrant, O. Skavhaug and A. Tveito
                                                                                                                                                                                                                                        IEEE Transactions on Biomedical Engineering, vol. 56, pp. 2546—2548, 2009
                                                                                                                                                                                                                                      15. A Note on a Method for Determining Advantageous Properties of an Anti-Arrhythmic Drug Based on a Mathematical Model of Cardiac Cells
                                                                                                                                                                                                                                        A. Tveito and G. T. Lines
                                                                                                                                                                                                                                        Mathematical Biosciences, vol. 217, pp. 167—173, 2009, [DOI]
                                                                                                                                                                                                                                      16. Numerical Solution of the Bidomain Equations
                                                                                                                                                                                                                                        S. Linge, J. Sundnes, M. Hanslien, G. T. Lines and A. Tveito
                                                                                                                                                                                                                                        Philosophical Transactions of the Royal Society A, vol. 367, pp. 1931—1951, 2009
                                                                                                                                                                                                                                      17. A Method for Analyzing the Stability of the Resting State for a Model of Pacemaker Cells Surrounded by Stable Cells
                                                                                                                                                                                                                                        R. Artebrant, A. Tveito and G. T. Lines
                                                                                                                                                                                                                                        Mathematical Biosciences and Engineering, vol. 7, pp. 505—526, 2010
                                                                                                                                                                                                                                      18. Existence of Excitation Waves for a Collection of Cardiomyocytes Electrically Coupled to Fibroblasts
                                                                                                                                                                                                                                        A. Tveito, G. T. Lines, R. Artebrant, O. Skavhaug and M. Maleckar
                                                                                                                                                                                                                                        Mathematical Biosciences, vol. 230, pp. 79—86, 2011, [DOI]
                                                                                                                                                                                                                                      19. Unstable Eigenmodes As Possible Drivers for Cardiac Arrhythmias
                                                                                                                                                                                                                                        A. Tveito, G. T. Lines, O. Skavhaug and M. Maleckar
                                                                                                                                                                                                                                        Journal of the Royal Society Interface, vol. 8, pp. 1212—6, 2011
                                                                                                                                                                                                                                      20. Computing the Stability of Steady-State Solutions of Mathematical Models of the Electrical Activity in the Heart
                                                                                                                                                                                                                                        A. Tveito, O. Skavhaug, G. T. Lines and R. Artebrant
                                                                                                                                                                                                                                        Mathematical Biosciences and Engineering, vol. 41, pp. 611—618, 2011, [DOI]
                                                                                                                                                                                                                                      21. Stability of Two Time-Integrators for the Aliev-Panfilov System
                                                                                                                                                                                                                                        M. Hanslien, R. Artebrant, A. Tveito, G. T. Lines and X. Cai
                                                                                                                                                                                                                                        International Journal of Numerical Analysis and Modeling, vol. 8, pp. 427—442, 2011
                                                                                                                                                                                                                                      22. On Defining Candidate Drug Characteristics for Long-QT
                                                                                                                                                                                                                                        A. Tveito, G. T. Lines, P. Li and A. D. McCulloch
                                                                                                                                                                                                                                        Mathematical Biosciences and Engineering, vol. 8, pp. 861—873, 2011
                                                                                                                                                                                                                                      23. Instabilities of the Resting State in a Mathematical Model of Calcium Handling in Cardiac Myocytes
                                                                                                                                                                                                                                        A. Tveito, G. T. Lines, J. E. Hake and A. Edwards
                                                                                                                                                                                                                                        Mathematical Biosciences, vol. 236, pp. 97—107, 2012, [DOI]
                                                                                                                                                                                                                                      24. A Note on a Possible Pro-Arrhythmic Property of Anti-Arrhythmic Drugs Aimed at Improving Gap-Junction Coupling
                                                                                                                                                                                                                                        A. Tveito, G. T. Lines and M. Maleckar
                                                                                                                                                                                                                                        Biophysical Journal, vol. 102, pp. 231—237, 2012
                                                                                                                                                                                                                                      25. An Analysis of the Shock Strength Needed to Achieve Defibrillation in a Simplified Mathematical Model of Cardiac Tissue
                                                                                                                                                                                                                                        A. Tveito, G. T. Lines, M. E. Rognes and M. Maleckar
                                                                                                                                                                                                                                        International Journal of Numerical Analysis and Modeling, vol. 9, pp. 644—657, 2012
                                                                                                                                                                                                                                      26. Slow Calcium-Depolarization-Calcium Waves May Initiate Fast Local Depolarization Waves in Ventricular Tissue
                                                                                                                                                                                                                                        A. Tveito, G. T. Lines, A. Edwards, M. Maleckar, A. P. Michailova, J. E. Hake and A. D. McCulloch
                                                                                                                                                                                                                                        Progress in Biophysics and Molecular Biology, vol. 110, pp. 295—304, 2012
                                                                                                                                                                                                                                      27. Mathematical Models of Cardiac Pacemaking Function
                                                                                                                                                                                                                                        P. Li, G. T. Lines, M. Maleckar and A. Tveito
                                                                                                                                                                                                                                        Frontiers in Physics, vol. 1, 2013, [DOI]
                                                                                                                                                                                                                                      28. Computing rates of Markov models of voltage-gated ion channels by inverting partial differential equations governing the probability density functions of the conducting and non-conducting states
                                                                                                                                                                                                                                        A. Tveito, G. T. Lines, A. Edwards and A. D. McCulloch
                                                                                                                                                                                                                                        Mathematical Biosciences, vol. 277, pp. 126—135, 2016
                                                                                                                                                                                                                                      29. An Evaluation of the Accuracy of Classical Models for Computing the Membrane Potential and Extracellular Potential for Neurons
                                                                                                                                                                                                                                        A. Tveito, K. H. Jæger, G. T. Lines, Ł. Paszkowski, J. Sundnes, A. Edwards, T. Mäki-Marttunen, G. Halnes and G. T. Einevoll
                                                                                                                                                                                                                                        Frontiers in Computational Neuroscience, vol. 11, pp. 27, 2017

                                                                                                                                                                                                                                      Books

                                                                                                                                                                                                                                      1. Introduction to Partial Differential Equations; a Computational Approach
                                                                                                                                                                                                                                        A. Tveito and R. Winther
                                                                                                                                                                                                                                        Springer, 2009
                                                                                                                                                                                                                                      2. Elements of Scientific Computing
                                                                                                                                                                                                                                        A. Tveito, H. P. Langtangen, B. F. Nielsen and X. Cai
                                                                                                                                                                                                                                        Springer, 2010
                                                                                                                                                                                                                                      3. Computing characterizations of drugs for ion channels and receptors using Markov models
                                                                                                                                                                                                                                        A. Tveito and G. T. Lines
                                                                                                                                                                                                                                        Springer, 2016

                                                                                                                                                                                                                                      Edited Books

                                                                                                                                                                                                                                      1. Simula Research Laboratory - by Thinking Constantly About It
                                                                                                                                                                                                                                        A. Tveito, A. M. Bruaset and O. Lysne
                                                                                                                                                                                                                                        Springer, 2009
                                                                                                                                                                                                                                      2. Conversations About Challenges in Computing
                                                                                                                                                                                                                                        A. M. Bruaset and A. Tveito
                                                                                                                                                                                                                                        Springer, 2013

                                                                                                                                                                                                                                      Chapters in Books

                                                                                                                                                                                                                                      1. Can ECG Recordings and Mathematics Tell the Condition of Your Heart?
                                                                                                                                                                                                                                        B. F. Nielsen, O. M. Lysaker, P. Grøttum, K.-A. Mardal, A. Tveito, C. Tarrou, K. Haugaa, A. Abildgaard and J. G. Fjeld
                                                                                                                                                                                                                                        in Simula Research Laboratory - by thinking constantly about it, Edited by A. Tveito, A. M. Bruaset and O. Lysne, Springer, pp. 287—319, 2009
                                                                                                                                                                                                                                      2. Scientific Computing
                                                                                                                                                                                                                                        H. P. Langtangen, U. Rüde and A. Tveito
                                                                                                                                                                                                                                        in Encyclopedia of Applied and Computational Mathematics, Edited by B. Engquist, Springer-Verlag, pp. 1302—1310, 2015
                                                                                                                                                                                                                                      3. Computational Partial Differential Equations
                                                                                                                                                                                                                                        A. Tveito, H. P. Langtangen and R. Winther
                                                                                                                                                                                                                                        in Encyclopedia of Applied and Computational Mathematics, Edited by B. Engquist, Springer-Verlag, pp. 271—278, 2015

                                                                                                                                                                                                                                      Talks

                                                                                                                                                                                                                                      1. On the Use of Computer Simulations for Identifying Ischemic Heart Disease; Theoretical and Practical Aspects
                                                                                                                                                                                                                                        B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. Haugaa
                                                                                                                                                                                                                                        Presented at the workshop Mathematics in Medicine/Biology, Centre of Mathematics for Applications, Department of Mathematics, University of Oslo, 2008
                                                                                                                                                                                                                                      2. Theoretical and Practical Aspects of the Inverse Problem of Electrocardiography
                                                                                                                                                                                                                                        B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. Haugaa
                                                                                                                                                                                                                                        Presented at Institut für Mathematik und Wissenschaftliches Rechnen, Karl Franzes Universität in Graz, Austria. Also presented at Institut für Numerische und Angewandte Mathematik, Westfälische Wilhelms-Universität Münster, Germany, 2008
                                                                                                                                                                                                                                      3. The Inverse Problem of Identifying Ischemic Heart Disease
                                                                                                                                                                                                                                        B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, A. Abildgaard, J. G. Fjeld and K. Haugaa
                                                                                                                                                                                                                                        Presented at the annual meeting of European Cardiac Simulation Group, Bologna, Italy, 2008
                                                                                                                                                                                                                                      4. Antiarrhythmic Drug Identifaction
                                                                                                                                                                                                                                        G. T. Lines, A. Tveito and P. Li
                                                                                                                                                                                                                                        Presented at the Bidomain Workshop, Graz, Austria, 2009
                                                                                                                                                                                                                                      5. Modelling, Mathematical Properties and Validation of the Inverse Ischemia Problem
                                                                                                                                                                                                                                        B. F. Nielsen, O. M. Lysaker, P. Grøttum, A. Tveito, K. Haugaa, A. Abildgaard, J. G. Fjeld and M. Burger
                                                                                                                                                                                                                                        Presented at the Bidomain Workshop, Graz, Austria, 2009

                                                                                                                                                                                                                                      Posters

                                                                                                                                                                                                                                      1. Mechano-electric feedback as a source of ectopic activity
                                                                                                                                                                                                                                        J. Sundnes, S. Wall, V. Timmermann and A. Tveito
                                                                                                                                                                                                                                        Gordon Research Conference on Arrhythmia Mechanisms, Lucca, Italy, 2015

                                                                                                                                                                                                                                      Kristin Tøndel

                                                                                                                                                                                                                                        Articles in International Journals

                                                                                                                                                                                                                                        1. A computational pipeline for quantification of mouse myocardial stiffness parameters
                                                                                                                                                                                                                                          O. Nordbø, P. Lamata, S. Land, S. A. Niederer, J. M. Aronsen, W. E. Louch, I. Sjaastad, H. Martens, A. B. Gjuvsland, K. Tøndel, H. Torp, M. Lohezic, J. E. Schneider, E. W. Remme, N. P. Smith and S. W. Omholt
                                                                                                                                                                                                                                          Computers in Biology and Medicine, vol. 53, pp. 65–75, 2014, [DOI]
                                                                                                                                                                                                                                        2. Quantifying inter-species differences in contractile function through biophysical modelling
                                                                                                                                                                                                                                          K. Tøndel, S. A. Niederer, S. Land and N. P. Smith
                                                                                                                                                                                                                                          Journal of Physiology, vol. 593, pp. 1083—1111, 2014, [DOI]
                                                                                                                                                                                                                                        3. Global structure of sloppiness in a nonlinear model
                                                                                                                                                                                                                                          V. Tafintseva, K. Tøndel, A. Ponosov and H. Martens
                                                                                                                                                                                                                                          Journal of Chemometrics, vol. 28, pp. 645—655, 2014, [DOI]
                                                                                                                                                                                                                                        4. Analyzing complex mathematical model behavior by Partial Least Squares Regression-based Multivariate Metamodeling
                                                                                                                                                                                                                                          K. Tøndel and H. Martens
                                                                                                                                                                                                                                          Wiley Interdisciplinary Reviews: Computational Statistics, vol. 6, pp. 440–475, 2014, [DOI]
                                                                                                                                                                                                                                        5. Insight into Model Mechanisms through Automatic Parameter Fitting: A new Methodological Framework for Model Development
                                                                                                                                                                                                                                          K. Tøndel, S. A. Niederer, S. Land and N. P. Smith
                                                                                                                                                                                                                                          BMC Systems Biology, vol. 8, pp. 59, 2014

                                                                                                                                                                                                                                        Didem Unat

                                                                                                                                                                                                                                          Articles in International Journals

                                                                                                                                                                                                                                          1. Accelerating a 3D Finite-Difference Earthquake Simulation With a C-to-CUDA Translator
                                                                                                                                                                                                                                            D. Unat, J. Zhou, Y. Cui, S. Baden and X. Cai
                                                                                                                                                                                                                                            Computing in Science & Engineering, vol. 14, pp. 48—59, 2012, [DOI]
                                                                                                                                                                                                                                          2. Modeling and Predicting Performance of High Performance Computing Applications on Hardware Accelerators
                                                                                                                                                                                                                                            M. R. Meswani, L. Carrington, D. Unat, A. Snavely, S. Baden and S. Poole
                                                                                                                                                                                                                                            International Journal of High Performance Computing Applications, vol. 27, pp. 89—108, 2013, [DOI]

                                                                                                                                                                                                                                          Refereed Proceedings